RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 PTPDC1A2A3K4 754 aa13.15□□□□□ -0.3
VPS53-207ENST00000570510 PRDM1O75626 825 aa13.15□□□□□ -0.3
VPS53-207ENST00000570510 APPP05067 770 aa13.15□□□□□ -0.3
VPS53-207ENST00000570510 PDE4BQ07343 736 aa13.15□□□□□ -0.3
VPS53-207ENST00000570510 MUM1L1Q5H9M0 696 aa13.15□□□□□ -0.3
VPS53-207ENST00000570510 PABPC5Q96DU9 382 aaKnown RBP13.15□□□□□ -0.3
VPS53-207ENST00000570510 C17orf80Q9BSJ5 609 aa13.15□□□□□ -0.3
VPS53-207ENST00000570510 BAZ2AQ9UIF9 1905 aaKnown RBP13.15□□□□□ -0.3
VPS53-207ENST00000570510 COL4A4P53420 1690 aaPredicted RBP13.15□□□□□ -0.31
VPS53-207ENST00000570510 B4DLN1 442 aa13.14□□□□□ -0.31
VPS53-207ENST00000570510 NCK2O43639 380 aa13.14□□□□□ -0.31
VPS53-207ENST00000570510 GFRA3O60609 400 aa13.14□□□□□ -0.31
VPS53-207ENST00000570510 AMHP03971 560 aa13.14□□□□□ -0.31
VPS53-207ENST00000570510 MCCP23508 829 aa13.14□□□□□ -0.31
VPS53-207ENST00000570510 IRS1P35568 1242 aa13.14□□□□□ -0.31
VPS53-207ENST00000570510 TDO2P48775 406 aa13.14□□□□□ -0.31
VPS53-207ENST00000570510 ALDH5A1P51649 535 aaPredicted RBP13.14□□□□□ -0.31
VPS53-207ENST00000570510 MRPL12P52815 198 aaKnown RBP13.14□□□□□ -0.31
VPS53-207ENST00000570510 SNAP25P60880 206 aa13.14□□□□□ -0.31
VPS53-207ENST00000570510 PKN1Q16512 942 aa13.14□□□□□ -0.31
VPS53-207ENST00000570510 SBK1Q52WX2 424 aa13.14□□□□□ -0.31
VPS53-207ENST00000570510 SCFD2Q8WU76 684 aa13.14□□□□□ -0.31
VPS53-207ENST00000570510 ANKS1AQ92625 1134 aa13.14□□□□□ -0.31
VPS53-207ENST00000570510 PBXIP1Q96AQ6 731 aa13.14□□□□□ -0.31
VPS53-207ENST00000570510 KIF1BPQ96EK5 621 aa13.14□□□□□ -0.31
VPS53-207ENST00000570510 SAMD11Q96NU1 681 aa13.14□□□□□ -0.31
VPS53-207ENST00000570510 MUTYHQ9UIF7 546 aa13.14□□□□□ -0.31
VPS53-207ENST00000570510 TXNP10599 105 aaKnown RBP13.13□□□□□ -0.31
VPS53-207ENST00000570510 GPM6BQ13491 265 aa13.13□□□□□ -0.31
VPS53-207ENST00000570510 BAATQ14032 418 aaPredicted RBP13.13□□□□□ -0.31
VPS53-207ENST00000570510 TCEAL5Q5H9L2 206 aa13.13□□□□□ -0.31
VPS53-207ENST00000570510 PPP4R3BQ5MIZ7 849 aa13.13□□□□□ -0.31
VPS53-207ENST00000570510 KCTD1Q719H9 257 aa13.13□□□□□ -0.31
VPS53-207ENST00000570510 MYOCDQ8IZQ8 938 aa13.13□□□□□ -0.31
VPS53-207ENST00000570510 PURBQ96QR8 312 aaKnown RBP13.13□□□□□ -0.31
VPS53-207ENST00000570510 PUS7LQ9H0K6 701 aaKnown RBP13.13□□□□□ -0.31
VPS53-207ENST00000570510 NSUN3Q9H649 340 aaKnown RBP13.13□□□□□ -0.31
VPS53-207ENST00000570510 MTMR7Q9Y216 660 aa13.13□□□□□ -0.31
VPS53-207ENST00000570510 LOC102724159A0A0B4J2E5 919 aa13.12□□□□□ -0.31
VPS53-207ENST00000570510 IGKV6D-41A0A0C4DH26 115 aa13.12□□□□□ -0.31
VPS53-207ENST00000570510 C19orf67A6NJJ6 358 aa13.12□□□□□ -0.31
VPS53-207ENST00000570510 A6NJR5 290 aa13.12□□□□□ -0.31
VPS53-207ENST00000570510 SLC3A2P08195 630 aaKnown RBP13.12□□□□□ -0.31
VPS53-207ENST00000570510 CALML3P27482 149 aa13.12□□□□□ -0.31
VPS53-207ENST00000570510 PWP2Q15269 919 aaKnown RBP13.12□□□□□ -0.31
VPS53-207ENST00000570510 CLUL1Q15846 466 aa13.12□□□□□ -0.31
VPS53-207ENST00000570510 EPC2Q52LR7 807 aa13.12□□□□□ -0.31
VPS53-207ENST00000570510 CEP85Q6P2H3 762 aa13.12□□□□□ -0.31
VPS53-207ENST00000570510 GIMAP6Q6P9H5 292 aa13.12□□□□□ -0.31
VPS53-207ENST00000570510 C7orf31Q8N865 590 aa13.12□□□□□ -0.31
VPS53-207ENST00000570510 MORC4Q8TE76 937 aa13.12□□□□□ -0.31
VPS53-207ENST00000570510 GMCL1Q96IK5 515 aa13.12□□□□□ -0.31
VPS53-207ENST00000570510 YME1L1Q96TA2 773 aa13.12□□□□□ -0.31
VPS53-207ENST00000570510 IRF2BPLQ9H1B7 796 aa13.12□□□□□ -0.31
VPS53-207ENST00000570510 STX8Q9UNK0 236 aa13.12□□□□□ -0.31
VPS53-207ENST00000570510 RBM47A0AV96 593 aaKnown RBP13.11□□□□□ -0.31
VPS53-207ENST00000570510 NBNO60934 754 aa13.11□□□□□ -0.31
VPS53-207ENST00000570510 CXCL10P02778 98 aa13.11□□□□□ -0.31
VPS53-207ENST00000570510 ICAM1P05362 532 aa13.11□□□□□ -0.31
VPS53-207ENST00000570510 CKBP12277 381 aa13.11□□□□□ -0.31
VPS53-207ENST00000570510 CASTP20810 708 aaKnown RBP13.11□□□□□ -0.31
VPS53-207ENST00000570510 CCDC96Q2M329 555 aa13.11□□□□□ -0.31
VPS53-207ENST00000570510 HERC4Q5GLZ8 1057 aaPredicted RBP13.11□□□□□ -0.31
VPS53-207ENST00000570510 RCSD1Q6JBY9 416 aa13.11□□□□□ -0.31
VPS53-207ENST00000570510 GDF6Q6KF10 455 aaPredicted RBP13.11□□□□□ -0.31
VPS53-207ENST00000570510 RNF135Q8IUD6 432 aa13.11□□□□□ -0.31
VPS53-207ENST00000570510 PRSS33Q8NF86 280 aa13.11□□□□□ -0.31
VPS53-207ENST00000570510 EDAQ92838 391 aa13.11□□□□□ -0.31
VPS53-207ENST00000570510 COPS5Q92905 334 aa13.11□□□□□ -0.31
VPS53-207ENST00000570510 STRBPQ96SI9 672 aaKnown RBP13.11□□□□□ -0.31
VPS53-207ENST00000570510 HAUS7Q99871 368 aa13.11□□□□□ -0.31
VPS53-207ENST00000570510 PRR12Q9ULL5 1215 aa13.11□□□□□ -0.31
VPS53-207ENST00000570510 TMEM221A6NGB7 291 aa13.1□□□□□ -0.31
VPS53-207ENST00000570510 GSG1L2A8MUP6 293 aa13.1□□□□□ -0.31
VPS53-207ENST00000570510 H3BNC9 293 aa13.1□□□□□ -0.31
VPS53-207ENST00000570510 M0R296 226 aa13.1□□□□□ -0.31
VPS53-207ENST00000570510 STXBP3O00186 592 aa13.1□□□□□ -0.31
VPS53-207ENST00000570510 CHGBP05060 677 aa13.1□□□□□ -0.31
VPS53-207ENST00000570510 ATP5JP18859 108 aa13.1□□□□□ -0.31
VPS53-207ENST00000570510 TFAP4Q01664 338 aa13.1□□□□□ -0.31
VPS53-207ENST00000570510 SMAD2Q15796 467 aaKnown RBP13.1□□□□□ -0.31
VPS53-207ENST00000570510 IER5LQ5T953 404 aa13.1□□□□□ -0.31
VPS53-207ENST00000570510 CHST3Q7LGC8 479 aa13.1□□□□□ -0.31
VPS53-207ENST00000570510 ATOH1Q92858 354 aaPredicted RBP13.1□□□□□ -0.31
VPS53-207ENST00000570510 NACAP1Q9BZK3 213 aa13.1□□□□□ -0.31
VPS53-207ENST00000570510 PLA2G6O60733 806 aa13.09□□□□□ -0.31
VPS53-207ENST00000570510 HMMRO75330 724 aa13.09□□□□□ -0.31
VPS53-207ENST00000570510 LGR5O75473 907 aa13.09□□□□□ -0.31
VPS53-207ENST00000570510 UPP2O95045 317 aa13.09□□□□□ -0.31
VPS53-207ENST00000570510 MS4A1P11836 297 aa13.09□□□□□ -0.31
VPS53-207ENST00000570510 GNAT2P19087 354 aa13.09□□□□□ -0.31
VPS53-207ENST00000570510 RNF207Q6ZRF8 634 aa13.09□□□□□ -0.31
VPS53-207ENST00000570510 BMP8AQ7Z5Y6 402 aa13.09□□□□□ -0.31
VPS53-207ENST00000570510 RPAINQ86UA6 219 aa13.09□□□□□ -0.31
VPS53-207ENST00000570510 DHX37Q8IY37 1157 aaKnown RBP13.09□□□□□ -0.31
VPS53-207ENST00000570510 TMEM192Q8IY95 271 aa13.09□□□□□ -0.31
VPS53-207ENST00000570510 NEDD1Q8NHV4 660 aa13.09□□□□□ -0.31
VPS53-207ENST00000570510 AFG1LQ8WV93 481 aa13.09□□□□□ -0.31
VPS53-207ENST00000570510 FAM86C1Q9NVL1 165 aa13.09□□□□□ -0.31
VPS53-207ENST00000570510 EMSYQ7Z589 1322 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms