RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 AGBL3Q8NEM8 1001 aa14.81□□□□□ -0.04
VPS4A-204ENST00000566354 OR8K1Q8NGG5 319 aa14.81□□□□□ -0.04
VPS4A-204ENST00000566354 RHOXF2Q9BQY4 288 aa14.81□□□□□ -0.04
VPS4A-204ENST00000566354 CWC15Q9P013 229 aaKnown RBP14.81□□□□□ -0.04
VPS4A-204ENST00000566354 SBF1O95248 1867 aa14.8□□□□□ -0.04
VPS4A-204ENST00000566354 FZD9O00144 591 aa14.8□□□□□ -0.04
VPS4A-204ENST00000566354 CALML3P27482 149 aa14.8□□□□□ -0.04
VPS4A-204ENST00000566354 LMAN1P49257 510 aa14.8□□□□□ -0.04
VPS4A-204ENST00000566354 VSNL1P62760 191 aa14.8□□□□□ -0.04
VPS4A-204ENST00000566354 WWC2Q6AWC2 1192 aa14.8□□□□□ -0.04
VPS4A-204ENST00000566354 WDR93Q6P2C0 686 aa14.8□□□□□ -0.04
VPS4A-204ENST00000566354 AMOTL1Q8IY63 956 aa14.8□□□□□ -0.04
VPS4A-204ENST00000566354 HAUS4Q9H6D7 363 aa14.8□□□□□ -0.04
VPS4A-204ENST00000566354 A0A1W2PQC6 194 aa14.8□□□□□ -0.04
VPS4A-204ENST00000566354 TCP10Q12799 353 aa14.8□□□□□ -0.04
VPS4A-204ENST00000566354 SEMA3FQ13275 785 aa14.8□□□□□ -0.04
VPS4A-204ENST00000566354 TNIP1Q15025 636 aa14.8□□□□□ -0.04
VPS4A-204ENST00000566354 CCDC148Q8NFR7 591 aa14.8□□□□□ -0.04
VPS4A-204ENST00000566354 HDAC9Q9UKV0 1011 aa14.8□□□□□ -0.04
VPS4A-204ENST00000566354 GJA3Q9Y6H8 435 aa14.8□□□□□ -0.04
VPS4A-204ENST00000566354 ROBO3Q96MS0 1386 aa14.79□□□□□ -0.04
VPS4A-204ENST00000566354 ZNF541Q9H0D2 1346 aa14.79□□□□□ -0.04
VPS4A-204ENST00000566354 SPDYE2BA6NHP3 402 aa14.79□□□□□ -0.04
VPS4A-204ENST00000566354 PARP1P09874 1014 aaKnown RBP14.79□□□□□ -0.04
VPS4A-204ENST00000566354 SPDYE6P0CI01 402 aa14.79□□□□□ -0.04
VPS4A-204ENST00000566354 EEF1GP26641 437 aaKnown RBP14.79□□□□□ -0.04
VPS4A-204ENST00000566354 STAT6P42226 847 aa14.79□□□□□ -0.04
VPS4A-204ENST00000566354 RAD51AP2Q09MP3 1159 aa14.79□□□□□ -0.04
VPS4A-204ENST00000566354 CASP8Q14790 479 aa14.79□□□□□ -0.04
VPS4A-204ENST00000566354 TSR1Q2NL82 804 aaKnown RBP14.79□□□□□ -0.04
VPS4A-204ENST00000566354 FAM47AQ5JRC9 791 aa14.79□□□□□ -0.04
VPS4A-204ENST00000566354 IRF2BP1Q8IU81 584 aa14.79□□□□□ -0.04
VPS4A-204ENST00000566354 ADSSL1Q8N142 457 aa14.79□□□□□ -0.04
VPS4A-204ENST00000566354 C4orf32Q8N8J7 132 aa14.79□□□□□ -0.04
VPS4A-204ENST00000566354 DNAJC7Q99615 494 aa14.79□□□□□ -0.04
VPS4A-204ENST00000566354 CHP1Q99653 195 aa14.79□□□□□ -0.04
VPS4A-204ENST00000566354 ACBD3Q9H3P7 528 aa14.79□□□□□ -0.04
VPS4A-204ENST00000566354 VPS18Q9P253 973 aa14.79□□□□□ -0.04
VPS4A-204ENST00000566354 FAM198AQ9UFP1 575 aa14.79□□□□□ -0.04
VPS4A-204ENST00000566354 LUC7L2Q9Y383 392 aaKnown RBP14.79□□□□□ -0.04
VPS4A-204ENST00000566354 TTC26A0AVF1 554 aa14.78□□□□□ -0.04
VPS4A-204ENST00000566354 KIF5BP33176 963 aa14.78□□□□□ -0.04
VPS4A-204ENST00000566354 ACTN2P35609 894 aa14.78□□□□□ -0.04
VPS4A-204ENST00000566354 EIF6P56537 245 aaKnown RBP14.78□□□□□ -0.04
VPS4A-204ENST00000566354 MB21D1Q8N884 522 aa14.78□□□□□ -0.04
VPS4A-204ENST00000566354 GDAQ9Y2T3 454 aa14.78□□□□□ -0.04
VPS4A-204ENST00000566354 DICER1Q9UPY3 1922 aaKnown RBP14.78□□□□□ -0.04
VPS4A-204ENST00000566354 LGALS16A8MUM7 142 aa14.78□□□□□ -0.04
VPS4A-204ENST00000566354 TFRCP02786 760 aaKnown RBP14.78□□□□□ -0.04
VPS4A-204ENST00000566354 MYL1P05976 194 aa14.78□□□□□ -0.04
VPS4A-204ENST00000566354 SLURP2P0DP57 97 aa14.78□□□□□ -0.04
VPS4A-204ENST00000566354 LMNB1P20700 586 aa14.78□□□□□ -0.04
VPS4A-204ENST00000566354 KCNB1Q14721 858 aa14.78□□□□□ -0.04
VPS4A-204ENST00000566354 DLGAP5Q15398 846 aa14.78□□□□□ -0.04
VPS4A-204ENST00000566354 HSP90B2PQ58FF3 399 aa14.78□□□□□ -0.04
VPS4A-204ENST00000566354 TRAPPC11Q7Z392 1133 aa14.78□□□□□ -0.04
VPS4A-204ENST00000566354 THAP9Q9H5L6 903 aa14.78□□□□□ -0.04
VPS4A-204ENST00000566354 SH3GLB2Q9NR46 395 aa14.78□□□□□ -0.04
VPS4A-204ENST00000566354 CAPN11Q9UMQ6 739 aa14.78□□□□□ -0.04
VPS4A-204ENST00000566354 GUCA1BQ9UMX6 200 aa14.78□□□□□ -0.04
VPS4A-204ENST00000566354 MAPK8IP1Q9UQF2 711 aa14.78□□□□□ -0.04
VPS4A-204ENST00000566354 REXO2Q9Y3B8 237 aaKnown RBP14.78□□□□□ -0.04
VPS4A-204ENST00000566354 CLRN2A0PK11 232 aa14.77□□□□□ -0.04
VPS4A-204ENST00000566354 NMT2O60551 498 aa14.77□□□□□ -0.04
VPS4A-204ENST00000566354 MCM3P25205 808 aa14.77□□□□□ -0.04
VPS4A-204ENST00000566354 STIM1Q13586 685 aa14.77□□□□□ -0.04
VPS4A-204ENST00000566354 ZNF662Q6ZS27 426 aa14.77□□□□□ -0.04
VPS4A-204ENST00000566354 BLIDQ8IZY5 108 aa14.77□□□□□ -0.04
VPS4A-204ENST00000566354 NOA1Q8NC60 698 aaKnown RBP14.77□□□□□ -0.04
VPS4A-204ENST00000566354 FAM71BQ8TC56 605 aa14.77□□□□□ -0.04
VPS4A-204ENST00000566354 ZNF507Q8TCN5 953 aa14.77□□□□□ -0.04
VPS4A-204ENST00000566354 IDI2Q9BXS1 227 aa14.77□□□□□ -0.04
VPS4A-204ENST00000566354 SUGCTQ9HAC7 445 aa14.77□□□□□ -0.04
VPS4A-204ENST00000566354 DISC1Q9NRI5 854 aa14.77□□□□□ -0.04
VPS4A-204ENST00000566354 EGFRP00533 1210 aa14.77□□□□□ -0.05
VPS4A-204ENST00000566354 CAPN2P17655 700 aa14.77□□□□□ -0.05
VPS4A-204ENST00000566354 GMPSP49915 693 aaPredicted RBP14.77□□□□□ -0.05
VPS4A-204ENST00000566354 KRT83P78385 493 aa14.77□□□□□ -0.05
VPS4A-204ENST00000566354 NCAPH2Q6IBW4 605 aa14.77□□□□□ -0.05
VPS4A-204ENST00000566354 EHBP1Q8NDI1 1231 aa14.77□□□□□ -0.05
VPS4A-204ENST00000566354 MKNK2Q9HBH9 465 aa14.77□□□□□ -0.05
VPS4A-204ENST00000566354 MED4Q9NPJ6 270 aa14.77□□□□□ -0.05
VPS4A-204ENST00000566354 MYCNP04198 464 aaPredicted RBP14.76□□□□□ -0.05
VPS4A-204ENST00000566354 CDK8P49336 464 aa14.76□□□□□ -0.05
VPS4A-204ENST00000566354 DTHD1Q6ZMT9 781 aa14.76□□□□□ -0.05
VPS4A-204ENST00000566354 LEKR1Q6ZMV7 388 aa14.76□□□□□ -0.05
VPS4A-204ENST00000566354 C16orf86Q6ZW13 317 aa14.76□□□□□ -0.05
VPS4A-204ENST00000566354 NOC3LQ8WTT2 800 aaKnown RBP14.76□□□□□ -0.05
VPS4A-204ENST00000566354 VIPAS39Q9H9C1 493 aa14.76□□□□□ -0.05
VPS4A-204ENST00000566354 DDTLA6NHG4 134 aaPredicted RBP14.76□□□□□ -0.05
VPS4A-204ENST00000566354 TSPY2A6NKD2 308 aa14.76□□□□□ -0.05
VPS4A-204ENST00000566354 PSMA7O14818 248 aa14.76□□□□□ -0.05
VPS4A-204ENST00000566354 VEGFAP15692 232 aaPredicted RBP14.76□□□□□ -0.05
VPS4A-204ENST00000566354 DNM2P50570 870 aa14.76□□□□□ -0.05
VPS4A-204ENST00000566354 TFAP4Q01664 338 aa14.76□□□□□ -0.05
VPS4A-204ENST00000566354 NBPF9Q3BBW0 867 aa14.76□□□□□ -0.05
VPS4A-204ENST00000566354 SH3BP5LQ7L8J4 393 aa14.76□□□□□ -0.05
VPS4A-204ENST00000566354 RPGRIP1Q96KN7 1286 aa14.76□□□□□ -0.05
VPS4A-204ENST00000566354 MYOZ2Q9NPC6 264 aa14.76□□□□□ -0.05
VPS4A-204ENST00000566354 MAGEC2Q9UBF1 373 aaPredicted RBP14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms