RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 NFXL1Q6ZNB6 911 aa21.33■■□□□ 1.01
CLN3-221ENST00000566057 TDHQ8IZJ6 230 aa21.33■■□□□ 1.01
CLN3-221ENST00000566057 NSUN6Q8TEA1 469 aaKnown RBP21.33■■□□□ 1.01
CLN3-221ENST00000566057 BADQ92934 168 aa21.33■■□□□ 1.01
CLN3-221ENST00000566057 TOX2Q96NM4 488 aa21.33■■□□□ 1.01
CLN3-221ENST00000566057 CCDC69A6NI79 296 aa21.32■■□□□ 1
CLN3-221ENST00000566057 B4DLN1 442 aa21.32■■□□□ 1
CLN3-221ENST00000566057 MRPL12P52815 198 aaKnown RBP21.32■■□□□ 1
CLN3-221ENST00000566057 GHRHRQ02643 423 aa21.32■■□□□ 1
CLN3-221ENST00000566057 ADCK5Q3MIX3 580 aa21.32■■□□□ 1
CLN3-221ENST00000566057 TSGA10IPQ3SY00 556 aa21.32■■□□□ 1
CLN3-221ENST00000566057 RAB11FIP4Q86YS3 637 aa21.32■■□□□ 1
CLN3-221ENST00000566057 CTCFLQ8NI51 663 aaPredicted RBP21.32■■□□□ 1
CLN3-221ENST00000566057 COPS5Q92905 334 aa21.32■■□□□ 1
CLN3-221ENST00000566057 GRIN2DO15399 1336 aa21.31■■□□□ 1
CLN3-221ENST00000566057 A0A0U1RQG5 324 aaPredicted RBP21.31■■□□□ 1
CLN3-221ENST00000566057 DCDC2CA8MYV0 355 aa21.31■■□□□ 1
CLN3-221ENST00000566057 ARVCFO00192 962 aa21.31■■□□□ 1
CLN3-221ENST00000566057 KIAA0355O15063 1070 aa21.31■■□□□ 1
CLN3-221ENST00000566057 ARIH2O95376 493 aa21.31■■□□□ 1
CLN3-221ENST00000566057 PLEKHA8P1O95397 391 aa21.31■■□□□ 1
CLN3-221ENST00000566057 EIF2AK2P19525 551 aaKnown RBP21.31■■□□□ 1
CLN3-221ENST00000566057 HOXA13P31271 388 aaPredicted RBP21.31■■□□□ 1
CLN3-221ENST00000566057 ARHGEF16Q5VV41 709 aa21.31■■□□□ 1
CLN3-221ENST00000566057 CMTR1Q8N1G2 835 aaKnown RBP21.31■■□□□ 1
CLN3-221ENST00000566057 SCFD2Q8WU76 684 aa21.31■■□□□ 1
CLN3-221ENST00000566057 LRCH3Q96II8 777 aa21.31■■□□□ 1
CLN3-221ENST00000566057 NEK1Q96PY6 1258 aa21.31■■□□□ 1
CLN3-221ENST00000566057 IWS1Q96ST2 819 aa21.31■■□□□ 1
CLN3-221ENST00000566057 SPZ1Q9BXG8 430 aa21.31■■□□□ 1
CLN3-221ENST00000566057 PXMP2Q9NR77 195 aa21.31■■□□□ 1
CLN3-221ENST00000566057 KIF5BP33176 963 aa21.3■■□□□ 1
CLN3-221ENST00000566057 EXOSC10Q01780 885 aaKnown RBP21.3■■□□□ 1
CLN3-221ENST00000566057 PPP2R5BQ15173 497 aa21.3■■□□□ 1
CLN3-221ENST00000566057 CCDC62Q6P9F0 684 aa21.3■■□□□ 1
CLN3-221ENST00000566057 SRBD1Q8N5C6 995 aaKnown RBP21.3■■□□□ 1
CLN3-221ENST00000566057 OR6J1Q8NGC5 347 aa21.3■■□□□ 1
CLN3-221ENST00000566057 TCEANC2Q96MN5 208 aa21.3■■□□□ 1
CLN3-221ENST00000566057 TMEM39AQ9NV64 488 aa21.3■■□□□ 1
CLN3-221ENST00000566057 ZEB2O60315 1214 aa21.29■■□□□ 1
CLN3-221ENST00000566057 CABYRO75952 493 aa21.29■■□□□ 1
CLN3-221ENST00000566057 NR3C2P08235 984 aa21.29■■□□□ 1
CLN3-221ENST00000566057 TXNP10599 105 aaKnown RBP21.29■■□□□ 1
CLN3-221ENST00000566057 SMARCA1P28370 1054 aa21.29■■□□□ 1
CLN3-221ENST00000566057 PSMC6P62333 389 aa21.29■■□□□ 1
CLN3-221ENST00000566057 STXBP2Q15833 593 aa21.29■■□□□ 1
CLN3-221ENST00000566057 SEPT14Q6ZU15 432 aa21.29■■□□□ 1
CLN3-221ENST00000566057 SGMS1Q86VZ5 419 aa21.29■■□□□ 1
CLN3-221ENST00000566057 SLC43A3Q8NBI5 491 aa21.29■■□□□ 1
CLN3-221ENST00000566057 MAP3K20Q9NYL2 800 aaKnown RBP21.29■■□□□ 1
CLN3-221ENST00000566057 SLC12A7Q9Y666 1083 aa21.29■■□□□ 1
CLN3-221ENST00000566057 SCN10AQ9Y5Y9 1956 aa21.28■■□□□ 1
CLN3-221ENST00000566057 NKRFO15226 690 aaKnown RBP eCLIP21.28■■□□□ 1
CLN3-221ENST00000566057 TRAF1Q13077 416 aa21.28■■□□□ 1
CLN3-221ENST00000566057 ITGA7Q13683 1181 aa21.28■■□□□ 1
CLN3-221ENST00000566057 TTLL4Q14679 1199 aa21.28■■□□□ 1
CLN3-221ENST00000566057 LRIT3Q3SXY7 679 aa21.28■■□□□ 1
CLN3-221ENST00000566057 DHX32Q7L7V1 743 aaKnown RBP21.28■■□□□ 1
CLN3-221ENST00000566057 FAM126BQ8IXS8 530 aa21.28■■□□□ 1
CLN3-221ENST00000566057 KCNB2Q92953 911 aa21.28■■□□□ 1
CLN3-221ENST00000566057 LZTS2Q9BRK4 669 aa21.28■■□□□ 1
CLN3-221ENST00000566057 MROH7Q68CQ1 1323 aa21.28■■□□□ 1
CLN3-221ENST00000566057 GCOM1H8Y6P7 765 aaPredicted RBP21.27■■□□□ 1
CLN3-221ENST00000566057 EIF3JO75822 258 aaKnown RBP21.27■■□□□ 1
CLN3-221ENST00000566057 POLR2MP0CAP2 368 aa21.27■■□□□ 1
CLN3-221ENST00000566057 CALM1P0DP23 149 aa21.27■■□□□ 1
CLN3-221ENST00000566057 CALM2P0DP24 149 aa21.27■■□□□ 1
CLN3-221ENST00000566057 CALM3P0DP25 149 aa21.27■■□□□ 1
CLN3-221ENST00000566057 RAG1P15918 1043 aa21.27■■□□□ 1
CLN3-221ENST00000566057 GNAQP50148 359 aa21.27■■□□□ 1
CLN3-221ENST00000566057 LY6KQ17RY6 165 aa21.27■■□□□ 1
CLN3-221ENST00000566057 SAMD3Q8N6K7 520 aa21.27■■□□□ 1
CLN3-221ENST00000566057 FANCBQ8NB91 859 aa21.27■■□□□ 1
CLN3-221ENST00000566057 RRP36Q96EU6 259 aaKnown RBP21.27■■□□□ 1
CLN3-221ENST00000566057 PDCD2LQ9BRP1 358 aa21.27■■□□□ 1
CLN3-221ENST00000566057 TBX21Q9UL17 535 aa21.27■■□□□ 1
CLN3-221ENST00000566057 CD4P01730 458 aa21.26■□□□□ 0.99
CLN3-221ENST00000566057 MYL3P08590 195 aa21.26■□□□□ 0.99
CLN3-221ENST00000566057 CPT1AP50416 773 aa21.26■□□□□ 0.99
CLN3-221ENST00000566057 PURAQ00577 322 aaKnown RBP21.26■□□□□ 0.99
CLN3-221ENST00000566057 C9orf50Q5SZB4 431 aa21.26■□□□□ 0.99
CLN3-221ENST00000566057 FCHSD1Q86WN1 690 aa21.26■□□□□ 0.99
CLN3-221ENST00000566057 IL31RAQ8NI17 732 aa21.26■□□□□ 0.99
CLN3-221ENST00000566057 POLR3EQ9NVU0 708 aa21.26■□□□□ 0.99
CLN3-221ENST00000566057 PPP4R2Q9NY27 417 aa21.26■□□□□ 0.99
CLN3-221ENST00000566057 BRPF3Q9ULD4 1205 aa21.26■□□□□ 0.99
CLN3-221ENST00000566057 hCG_1642624A0A1W2PR95 340 aa21.25■□□□□ 0.99
CLN3-221ENST00000566057 A6NJR5 290 aa21.25■□□□□ 0.99
CLN3-221ENST00000566057 RGS20O76081 388 aa21.25■□□□□ 0.99
CLN3-221ENST00000566057 MYCLP12524 364 aaPredicted RBP21.25■□□□□ 0.99
CLN3-221ENST00000566057 CPA1P15085 419 aa21.25■□□□□ 0.99
CLN3-221ENST00000566057 HSPA4P34932 840 aa21.25■□□□□ 0.99
CLN3-221ENST00000566057 EPHB4P54760 987 aa21.25■□□□□ 0.99
CLN3-221ENST00000566057 KRT32Q14532 448 aa21.25■□□□□ 0.99
CLN3-221ENST00000566057 PGM5Q15124 567 aa21.25■□□□□ 0.99
CLN3-221ENST00000566057 SHHQ15465 462 aa21.25■□□□□ 0.99
CLN3-221ENST00000566057 APOA5Q6Q788 366 aa21.25■□□□□ 0.99
CLN3-221ENST00000566057 VSIG10LQ86VR7 867 aa21.25■□□□□ 0.99
CLN3-221ENST00000566057 MICU3Q86XE3 530 aa21.25■□□□□ 0.99
CLN3-221ENST00000566057 CCDC82Q8N4S0 544 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms