RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 TRBV23OR9-2A0A075B6M9 112 aa6.51□□□□□ -1.37
VPS35-205ENST00000563984 STXBP3O00186 592 aa6.51□□□□□ -1.37
VPS35-205ENST00000563984 NOP56O00567 594 aaKnown RBP6.51□□□□□ -1.37
VPS35-205ENST00000563984 RRP9O43818 475 aaKnown RBP6.51□□□□□ -1.37
VPS35-205ENST00000563984 DNAJA1P31689 397 aaKnown RBP6.51□□□□□ -1.37
VPS35-205ENST00000563984 SRSF3P84103 164 aaKnown RBP6.51□□□□□ -1.37
VPS35-205ENST00000563984 SSPNQ14714 243 aa6.51□□□□□ -1.37
VPS35-205ENST00000563984 CBX2Q14781 532 aaPredicted RBP6.51□□□□□ -1.37
VPS35-205ENST00000563984 NR1I3Q14994 352 aa6.51□□□□□ -1.37
VPS35-205ENST00000563984 FXNQ16595 210 aa6.51□□□□□ -1.37
VPS35-205ENST00000563984 LARP1BQ659C4 914 aaKnown RBP6.51□□□□□ -1.37
VPS35-205ENST00000563984 C6orf15Q6UXA7 325 aaPredicted RBP6.51□□□□□ -1.37
VPS35-205ENST00000563984 MCF2L2Q86YR7 1114 aa6.51□□□□□ -1.37
VPS35-205ENST00000563984 ZNF408Q9H9D4 720 aa6.51□□□□□ -1.37
VPS35-205ENST00000563984 PDLIM7Q9NR12 457 aa6.51□□□□□ -1.37
VPS35-205ENST00000563984 SIRT5Q9NXA8 310 aa6.51□□□□□ -1.37
VPS35-205ENST00000563984 KLHL14Q9P2G3 628 aa6.51□□□□□ -1.37
VPS35-205ENST00000563984 APEX2Q9UBZ4 518 aa6.51□□□□□ -1.37
VPS35-205ENST00000563984 A0A1W2PQJ5 194 aa6.5□□□□□ -1.37
VPS35-205ENST00000563984 TPD52L2O43399 206 aaKnown RBP6.5□□□□□ -1.37
VPS35-205ENST00000563984 CELA3BP08861 270 aa6.5□□□□□ -1.37
VPS35-205ENST00000563984 CALRP27797 417 aaKnown RBP6.5□□□□□ -1.37
VPS35-205ENST00000563984 VIPR1P32241 457 aa6.5□□□□□ -1.37
VPS35-205ENST00000563984 RAB3GAP1Q15042 981 aa6.5□□□□□ -1.37
VPS35-205ENST00000563984 FAM178BQ8IXR5 827 aa6.5□□□□□ -1.37
VPS35-205ENST00000563984 PANK1Q8TE04 598 aa6.5□□□□□ -1.37
VPS35-205ENST00000563984 R3HCC1Q9Y3T6 440 aaKnown RBP6.5□□□□□ -1.37
VPS35-205ENST00000563984 KCTD3Q9Y597 815 aa6.5□□□□□ -1.37
VPS35-205ENST00000563984 SMARCA5O60264 1052 aaPredicted RBP6.49□□□□□ -1.37
VPS35-205ENST00000563984 DDAH1O94760 285 aa6.49□□□□□ -1.37
VPS35-205ENST00000563984 KCNH1O95259 989 aa6.49□□□□□ -1.37
VPS35-205ENST00000563984 MSL3P1P0C860 447 aa6.49□□□□□ -1.37
VPS35-205ENST00000563984 PAMP19021 973 aa6.49□□□□□ -1.37
VPS35-205ENST00000563984 PI3P19957 117 aa6.49□□□□□ -1.37
VPS35-205ENST00000563984 EPHB3P54753 998 aa6.49□□□□□ -1.37
VPS35-205ENST00000563984 ZXDCQ2QGD7 858 aaPredicted RBP6.49□□□□□ -1.37
VPS35-205ENST00000563984 TCERG1LQ5VWI1 586 aa6.49□□□□□ -1.37
VPS35-205ENST00000563984 TSHZ1Q6ZSZ6 1077 aa6.49□□□□□ -1.37
VPS35-205ENST00000563984 TRIM59Q8IWR1 403 aa6.49□□□□□ -1.37
VPS35-205ENST00000563984 SGSM3Q96HU1 749 aa6.49□□□□□ -1.37
VPS35-205ENST00000563984 TERF2IPQ9NYB0 399 aa6.49□□□□□ -1.37
VPS35-205ENST00000563984 MBD1Q9UIS9 605 aaPredicted RBP6.49□□□□□ -1.37
VPS35-205ENST00000563984 NPHP3-ACAD11A0A0J9YXS1 232 aa6.48□□□□□ -1.37
VPS35-205ENST00000563984 SRGAP3O43295 1099 aa6.48□□□□□ -1.37
VPS35-205ENST00000563984 MARCH6O60337 910 aa6.48□□□□□ -1.37
VPS35-205ENST00000563984 APPP05067 770 aa6.48□□□□□ -1.37
VPS35-205ENST00000563984 CALD1Q05682 793 aaKnown RBP6.48□□□□□ -1.37
VPS35-205ENST00000563984 PAQR3Q6TCH7 311 aa6.48□□□□□ -1.37
VPS35-205ENST00000563984 RINLQ6ZS11 566 aa6.48□□□□□ -1.37
VPS35-205ENST00000563984 COPS5Q92905 334 aa6.48□□□□□ -1.37
VPS35-205ENST00000563984 MRGPRX3Q96LB0 322 aa6.48□□□□□ -1.37
VPS35-205ENST00000563984 CYP26B1Q9NR63 512 aa6.48□□□□□ -1.37
VPS35-205ENST00000563984 OTOL1A6NHN0 477 aaPredicted RBP6.47□□□□□ -1.37
VPS35-205ENST00000563984 NUDT19A8MXV4 375 aa6.47□□□□□ -1.37
VPS35-205ENST00000563984 CYBBP04839 570 aa6.47□□□□□ -1.37
VPS35-205ENST00000563984 MAPKAPK2P49137 400 aa6.47□□□□□ -1.37
VPS35-205ENST00000563984 GTF2IRD2BQ6EKJ0 949 aa6.47□□□□□ -1.37
VPS35-205ENST00000563984 RPTNQ6XPR3 784 aa6.47□□□□□ -1.37
VPS35-205ENST00000563984 GTF2IRD2Q86UP8 949 aa6.47□□□□□ -1.37
VPS35-205ENST00000563984 PPP1R14AQ96A00 147 aa6.47□□□□□ -1.37
VPS35-205ENST00000563984 EPN3Q9H201 632 aa6.47□□□□□ -1.37
VPS35-205ENST00000563984 NKX2-4Q9H2Z4 354 aa6.47□□□□□ -1.37
VPS35-205ENST00000563984 CNTD2Q9H8S5 307 aa6.47□□□□□ -1.37
VPS35-205ENST00000563984 HDAC5Q9UQL6 1122 aa6.47□□□□□ -1.37
VPS35-205ENST00000563984 B2RBV5 119 aa6.46□□□□□ -1.38
VPS35-205ENST00000563984 N4BP3O15049 544 aa6.46□□□□□ -1.38
VPS35-205ENST00000563984 ANP32CO43423 234 aa6.46□□□□□ -1.38
VPS35-205ENST00000563984 SUSD5O60279 629 aa6.46□□□□□ -1.38
VPS35-205ENST00000563984 DBHP09172 617 aa6.46□□□□□ -1.38
VPS35-205ENST00000563984 ZC3H6P61129 1189 aaKnown RBP6.46□□□□□ -1.38
VPS35-205ENST00000563984 IRX3P78415 501 aaPredicted RBP6.46□□□□□ -1.38
VPS35-205ENST00000563984 SCRN1Q12765 414 aa6.46□□□□□ -1.38
VPS35-205ENST00000563984 RALBP1Q15311 655 aa6.46□□□□□ -1.38
VPS35-205ENST00000563984 VMACQ2NL98 169 aa6.46□□□□□ -1.38
VPS35-205ENST00000563984 SV2CQ496J9 727 aa6.46□□□□□ -1.38
VPS35-205ENST00000563984 BICRALQ6AI39 1079 aa6.46□□□□□ -1.38
VPS35-205ENST00000563984 ZC3H14Q6PJT7 736 aaKnown RBP6.46□□□□□ -1.38
VPS35-205ENST00000563984 TMC6Q7Z403 805 aa6.46□□□□□ -1.38
VPS35-205ENST00000563984 SIGLEC10Q96LC7 697 aa6.46□□□□□ -1.38
VPS35-205ENST00000563984 MMP19Q99542 508 aa6.46□□□□□ -1.38
VPS35-205ENST00000563984 RFXAPO00287 272 aa6.45□□□□□ -1.38
VPS35-205ENST00000563984 HOXC12P31275 282 aa6.45□□□□□ -1.38
VPS35-205ENST00000563984 ANP32AP39687 249 aaKnown RBP6.45□□□□□ -1.38
VPS35-205ENST00000563984 ZNF385BQ569K4 471 aa6.45□□□□□ -1.38
VPS35-205ENST00000563984 ANKS3Q6ZW76 656 aa6.45□□□□□ -1.38
VPS35-205ENST00000563984 EEPD1Q7L9B9 569 aa6.45□□□□□ -1.38
VPS35-205ENST00000563984 CABP7Q86V35 215 aa6.45□□□□□ -1.38
VPS35-205ENST00000563984 LDHDQ86WU2 507 aa6.45□□□□□ -1.38
VPS35-205ENST00000563984 CPNE8Q86YQ8 564 aa6.45□□□□□ -1.38
VPS35-205ENST00000563984 LZTR1Q8N653 840 aa6.45□□□□□ -1.38
VPS35-205ENST00000563984 MICAL1Q8TDZ2 1067 aa6.45□□□□□ -1.38
VPS35-205ENST00000563984 LRP2BPQ9P2M1 347 aa6.45□□□□□ -1.38
VPS35-205ENST00000563984 IRAK3Q9Y616 596 aa6.45□□□□□ -1.38
VPS35-205ENST00000563984 C7orf72A4D263 438 aa6.44□□□□□ -1.38
VPS35-205ENST00000563984 SUV39H1O43463 412 aa6.44□□□□□ -1.38
VPS35-205ENST00000563984 KLF4O43474 513 aa6.44□□□□□ -1.38
VPS35-205ENST00000563984 NPHS1O60500 1241 aa6.44□□□□□ -1.38
VPS35-205ENST00000563984 GJB6O95452 261 aa6.44□□□□□ -1.38
VPS35-205ENST00000563984 ITGAVP06756 1048 aa6.44□□□□□ -1.38
VPS35-205ENST00000563984 THBDP07204 575 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms