RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 TRIM43BA6NCK2 446 aa18.15■□□□□ 0.5
VPS39-203ENST00000561797 DCDC2CA8MYV0 355 aa18.15■□□□□ 0.5
VPS39-203ENST00000561797 ZEB2O60315 1214 aa18.15■□□□□ 0.5
VPS39-203ENST00000561797 HOXA13P31271 388 aaPredicted RBP18.15■□□□□ 0.5
VPS39-203ENST00000561797 HSD17B4P51659 736 aa18.15■□□□□ 0.5
VPS39-203ENST00000561797 TRAF1Q13077 416 aa18.15■□□□□ 0.5
VPS39-203ENST00000561797 ADCK5Q3MIX3 580 aa18.15■□□□□ 0.5
VPS39-203ENST00000561797 OR6J1Q8NGC5 347 aa18.15■□□□□ 0.5
VPS39-203ENST00000561797 SCFD2Q8WU76 684 aa18.15■□□□□ 0.5
VPS39-203ENST00000561797 TRIM43Q96BQ3 446 aaPredicted RBP18.15■□□□□ 0.5
VPS39-203ENST00000561797 PPP4R2Q9NY27 417 aa18.15■□□□□ 0.5
VPS39-203ENST00000561797 SLC12A7Q9Y666 1083 aa18.15■□□□□ 0.5
VPS39-203ENST00000561797 DOCK5Q9H7D0 1870 aa18.14■□□□□ 0.49
VPS39-203ENST00000561797 A0A0U1RQG5 324 aaPredicted RBP18.14■□□□□ 0.49
VPS39-203ENST00000561797 PLEKHA8P1O95397 391 aa18.14■□□□□ 0.49
VPS39-203ENST00000561797 CALM1P0DP23 149 aa18.14■□□□□ 0.49
VPS39-203ENST00000561797 CALM2P0DP24 149 aa18.14■□□□□ 0.49
VPS39-203ENST00000561797 CALM3P0DP25 149 aa18.14■□□□□ 0.49
VPS39-203ENST00000561797 TXNP10599 105 aaKnown RBP18.14■□□□□ 0.49
VPS39-203ENST00000561797 PPP2R5BQ15173 497 aa18.14■□□□□ 0.49
VPS39-203ENST00000561797 SEPT14Q6ZU15 432 aa18.14■□□□□ 0.49
VPS39-203ENST00000561797 TDHQ8IZJ6 230 aa18.14■□□□□ 0.49
VPS39-203ENST00000561797 CMTR1Q8N1G2 835 aaKnown RBP18.14■□□□□ 0.49
VPS39-203ENST00000561797 COPS5Q92905 334 aa18.14■□□□□ 0.49
VPS39-203ENST00000561797 BADQ92934 168 aa18.14■□□□□ 0.49
VPS39-203ENST00000561797 RRP36Q96EU6 259 aaKnown RBP18.14■□□□□ 0.49
VPS39-203ENST00000561797 IWS1Q96ST2 819 aa18.14■□□□□ 0.49
VPS39-203ENST00000561797 PXMP2Q9NR77 195 aa18.14■□□□□ 0.49
VPS39-203ENST00000561797 TMEM39AQ9NV64 488 aa18.14■□□□□ 0.49
VPS39-203ENST00000561797 ARVCFO00192 962 aa18.13■□□□□ 0.49
VPS39-203ENST00000561797 GNAQP50148 359 aa18.13■□□□□ 0.49
VPS39-203ENST00000561797 CDK7P50613 346 aa18.13■□□□□ 0.49
VPS39-203ENST00000561797 FAAP100Q0VG06 881 aa18.13■□□□□ 0.49
VPS39-203ENST00000561797 STXBP2Q15833 593 aa18.13■□□□□ 0.49
VPS39-203ENST00000561797 TSGA10IPQ3SY00 556 aa18.13■□□□□ 0.49
VPS39-203ENST00000561797 DHX32Q7L7V1 743 aaKnown RBP18.13■□□□□ 0.49
VPS39-203ENST00000561797 ANKRD33Q7Z3H0 272 aa18.13■□□□□ 0.49
VPS39-203ENST00000561797 FCHSD1Q86WN1 690 aa18.13■□□□□ 0.49
VPS39-203ENST00000561797 SRBD1Q8N5C6 995 aaKnown RBP18.13■□□□□ 0.49
VPS39-203ENST00000561797 TOX2Q96NM4 488 aa18.13■□□□□ 0.49
VPS39-203ENST00000561797 SPZ1Q9BXG8 430 aa18.13■□□□□ 0.49
VPS39-203ENST00000561797 GCOM1H8Y6P7 765 aaPredicted RBP18.12■□□□□ 0.49
VPS39-203ENST00000561797 SOX1O00570 391 aaPredicted RBP18.12■□□□□ 0.49
VPS39-203ENST00000561797 NKRFO15226 690 aaKnown RBP eCLIP18.12■□□□□ 0.49
VPS39-203ENST00000561797 CABYRO75952 493 aa18.12■□□□□ 0.49
VPS39-203ENST00000561797 ARIH2O95376 493 aa18.12■□□□□ 0.49
VPS39-203ENST00000561797 CENPBP07199 599 aaPredicted RBP18.12■□□□□ 0.49
VPS39-203ENST00000561797 NR3C2P08235 984 aa18.12■□□□□ 0.49
VPS39-203ENST00000561797 MYL3P08590 195 aa18.12■□□□□ 0.49
VPS39-203ENST00000561797 POLR2MP0CAP2 368 aa18.12■□□□□ 0.49
VPS39-203ENST00000561797 MYCLP12524 364 aaPredicted RBP18.12■□□□□ 0.49
VPS39-203ENST00000561797 RAG1P15918 1043 aa18.12■□□□□ 0.49
VPS39-203ENST00000561797 ITGB8P26012 769 aa18.12■□□□□ 0.49
VPS39-203ENST00000561797 PSMC6P62333 389 aa18.12■□□□□ 0.49
VPS39-203ENST00000561797 EXOSC10Q01780 885 aaKnown RBP18.12■□□□□ 0.49
VPS39-203ENST00000561797 GHRHRQ02643 423 aa18.12■□□□□ 0.49
VPS39-203ENST00000561797 KRT32Q14532 448 aa18.12■□□□□ 0.49
VPS39-203ENST00000561797 TTLL4Q14679 1199 aa18.12■□□□□ 0.49
VPS39-203ENST00000561797 SYNE3Q6ZMZ3 975 aa18.12■□□□□ 0.49
VPS39-203ENST00000561797 MICU3Q86XE3 530 aa18.12■□□□□ 0.49
VPS39-203ENST00000561797 CCDC82Q8N4S0 544 aa18.12■□□□□ 0.49
VPS39-203ENST00000561797 SAMD3Q8N6K7 520 aa18.12■□□□□ 0.49
VPS39-203ENST00000561797 FANCBQ8NB91 859 aa18.12■□□□□ 0.49
VPS39-203ENST00000561797 LZTS2Q9BRK4 669 aa18.12■□□□□ 0.49
VPS39-203ENST00000561797 MAP3K20Q9NYL2 800 aaKnown RBP18.12■□□□□ 0.49
VPS39-203ENST00000561797 SEC63Q9UGP8 760 aaKnown RBP18.12■□□□□ 0.49
VPS39-203ENST00000561797 MROH7Q68CQ1 1323 aa18.12■□□□□ 0.49
VPS39-203ENST00000561797 KIAA0355O15063 1070 aa18.11■□□□□ 0.49
VPS39-203ENST00000561797 CPA1P15085 419 aa18.11■□□□□ 0.49
VPS39-203ENST00000561797 SMARCA1P28370 1054 aa18.11■□□□□ 0.49
VPS39-203ENST00000561797 CPT1AP50416 773 aa18.11■□□□□ 0.49
VPS39-203ENST00000561797 ITGA7Q13683 1181 aa18.11■□□□□ 0.49
VPS39-203ENST00000561797 LY6KQ17RY6 165 aa18.11■□□□□ 0.49
VPS39-203ENST00000561797 SGMS1Q86VZ5 419 aa18.11■□□□□ 0.49
VPS39-203ENST00000561797 LRCH3Q96II8 777 aa18.11■□□□□ 0.49
VPS39-203ENST00000561797 PDCD2LQ9BRP1 358 aa18.11■□□□□ 0.49
VPS39-203ENST00000561797 SCN10AQ9Y5Y9 1956 aa18.1■□□□□ 0.49
VPS39-203ENST00000561797 hCG_1642624A0A1W2PR95 340 aa18.1■□□□□ 0.49
VPS39-203ENST00000561797 TLR3O15455 904 aaKnown RBP18.1■□□□□ 0.49
VPS39-203ENST00000561797 EIF3JO75822 258 aaKnown RBP18.1■□□□□ 0.49
VPS39-203ENST00000561797 HSPA4P34932 840 aa18.1■□□□□ 0.49
VPS39-203ENST00000561797 BRDTQ58F21 947 aaPredicted RBP18.1■□□□□ 0.49
VPS39-203ENST00000561797 CCDC62Q6P9F0 684 aa18.1■□□□□ 0.49
VPS39-203ENST00000561797 FAM126BQ8IXS8 530 aa18.1■□□□□ 0.49
VPS39-203ENST00000561797 ZFP91Q96JP5 570 aaPredicted RBP18.1■□□□□ 0.49
VPS39-203ENST00000561797 POLR3EQ9NVU0 708 aa18.1■□□□□ 0.49
VPS39-203ENST00000561797 SNX14Q9Y5W7 946 aa18.1■□□□□ 0.49
VPS39-203ENST00000561797 GRIN2DO15399 1336 aa18.09■□□□□ 0.49
VPS39-203ENST00000561797 REC8O95072 547 aa18.09■□□□□ 0.49
VPS39-203ENST00000561797 FGD1P98174 961 aa18.09■□□□□ 0.49
VPS39-203ENST00000561797 PGM5Q15124 567 aa18.09■□□□□ 0.49
VPS39-203ENST00000561797 ERICH6BQ5W0A0 696 aa18.09■□□□□ 0.49
VPS39-203ENST00000561797 APOA5Q6Q788 366 aa18.09■□□□□ 0.49
VPS39-203ENST00000561797 TMTC3Q6ZXV5 915 aa18.09■□□□□ 0.49
VPS39-203ENST00000561797 IL31RAQ8NI17 732 aa18.09■□□□□ 0.49
VPS39-203ENST00000561797 JAKMIP1Q96N16 626 aaKnown RBP18.09■□□□□ 0.49
VPS39-203ENST00000561797 BRPF3Q9ULD4 1205 aa18.09■□□□□ 0.49
VPS39-203ENST00000561797 NAP1L2Q9ULW6 460 aaPredicted RBP18.09■□□□□ 0.49
VPS39-203ENST00000561797 ZBTB43O43298 467 aa18.08■□□□□ 0.48
VPS39-203ENST00000561797 GH1P01241 217 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms