RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 CLEC4DQ8WXI8 215 aa22.27■■□□□ 1.16
VPS35-202ENST00000561713 PCDHA11Q9Y5I1 949 aa22.27■■□□□ 1.16
VPS35-202ENST00000561713 KIAA1217Q5T5P2 1943 aa22.26■■□□□ 1.15
VPS35-202ENST00000561713 ATP2A2P16615 1042 aaKnown RBP22.26■■□□□ 1.15
VPS35-202ENST00000561713 TTLL4Q14679 1199 aa22.26■■□□□ 1.15
VPS35-202ENST00000561713 MICALL1Q8N3F8 863 aa22.26■■□□□ 1.15
VPS35-202ENST00000561713 WDR11Q9BZH6 1224 aa22.26■■□□□ 1.15
VPS35-202ENST00000561713 UBA5Q9GZZ9 404 aa22.26■■□□□ 1.15
VPS35-202ENST00000561713 BAZ2BQ9UIF8 2168 aaKnown RBP22.25■■□□□ 1.15
VPS35-202ENST00000561713 PURAQ00577 322 aaKnown RBP22.25■■□□□ 1.15
VPS35-202ENST00000561713 DEFB128Q7Z7B8 93 aa22.25■■□□□ 1.15
VPS35-202ENST00000561713 PNMA1Q8ND90 353 aa22.25■■□□□ 1.15
VPS35-202ENST00000561713 IL27Q8NEV9 243 aa22.25■■□□□ 1.15
VPS35-202ENST00000561713 TNKSO95271 1327 aa22.25■■□□□ 1.15
VPS35-202ENST00000561713 HIP1O00291 1037 aa22.24■■□□□ 1.15
VPS35-202ENST00000561713 MYL3P08590 195 aa22.24■■□□□ 1.15
VPS35-202ENST00000561713 TTC22Q5TAA0 569 aa22.24■■□□□ 1.15
VPS35-202ENST00000561713 ENAHQ8N8S7 591 aaPredicted RBP22.24■■□□□ 1.15
VPS35-202ENST00000561713 PPP1R13LQ8WUF5 828 aa22.24■■□□□ 1.15
VPS35-202ENST00000561713 TTC14Q96N46 770 aa22.24■■□□□ 1.15
VPS35-202ENST00000561713 DSCC1Q9BVC3 393 aa22.24■■□□□ 1.15
VPS35-202ENST00000561713 POLR3EQ9NVU0 708 aa22.24■■□□□ 1.15
VPS35-202ENST00000561713 ADD3Q9UEY8 706 aaKnown RBP22.24■■□□□ 1.15
VPS35-202ENST00000561713 SCN5AQ14524 2016 aa22.23■■□□□ 1.15
VPS35-202ENST00000561713 SUPT20HL2P0C7V6 817 aa22.23■■□□□ 1.15
VPS35-202ENST00000561713 TFF2Q03403 129 aa22.23■■□□□ 1.15
VPS35-202ENST00000561713 CDC37Q16543 378 aaPredicted RBP22.23■■□□□ 1.15
VPS35-202ENST00000561713 RNF207Q6ZRF8 634 aa22.23■■□□□ 1.15
VPS35-202ENST00000561713 IQCA1Q86XH1 822 aa22.23■■□□□ 1.15
VPS35-202ENST00000561713 NECAB3Q96P71 396 aaPredicted RBP22.23■■□□□ 1.15
VPS35-202ENST00000561713 KAT14Q9H8E8 782 aa22.23■■□□□ 1.15
VPS35-202ENST00000561713 NCOR1O75376 2440 aa22.23■■□□□ 1.15
VPS35-202ENST00000561713 WDR19Q8NEZ3 1342 aa22.23■■□□□ 1.15
VPS35-202ENST00000561713 SCN10AQ9Y5Y9 1956 aa22.23■■□□□ 1.15
VPS35-202ENST00000561713 RBM47A0AV96 593 aaKnown RBP22.22■■□□□ 1.15
VPS35-202ENST00000561713 RFXAPO00287 272 aa22.22■■□□□ 1.15
VPS35-202ENST00000561713 CPT1AP50416 773 aa22.22■■□□□ 1.15
VPS35-202ENST00000561713 RPS6P62753 249 aaKnown RBP22.22■■□□□ 1.15
VPS35-202ENST00000561713 IMMTQ16891 758 aaKnown RBP22.22■■□□□ 1.15
VPS35-202ENST00000561713 ZSCAN10Q96SZ4 725 aaPredicted RBP22.22■■□□□ 1.15
VPS35-202ENST00000561713 TSPYL2Q9H2G4 693 aaPredicted RBP22.22■■□□□ 1.15
VPS35-202ENST00000561713 CA3P07451 260 aa22.21■■□□□ 1.15
VPS35-202ENST00000561713 PFKMP08237 780 aa22.21■■□□□ 1.15
VPS35-202ENST00000561713 BMP1P13497 986 aa22.21■■□□□ 1.15
VPS35-202ENST00000561713 NBPF20Q3BBV1 942 aa22.21■■□□□ 1.15
VPS35-202ENST00000561713 FAM47CQ5HY64 1035 aa22.21■■□□□ 1.15
VPS35-202ENST00000561713 TMEM67Q5HYA8 995 aa22.21■■□□□ 1.15
VPS35-202ENST00000561713 GPATCH4Q5T3I0 446 aaKnown RBP22.21■■□□□ 1.15
VPS35-202ENST00000561713 DGKHQ86XP1 1220 aa22.21■■□□□ 1.15
VPS35-202ENST00000561713 OR6J1Q8NGC5 347 aa22.21■■□□□ 1.15
VPS35-202ENST00000561713 MTG1Q9BT17 334 aaPredicted RBP22.21■■□□□ 1.15
VPS35-202ENST00000561713 CERS4Q9HA82 394 aa22.21■■□□□ 1.15
VPS35-202ENST00000561713 GPHNQ9NQX3 736 aaPredicted RBP22.21■■□□□ 1.15
VPS35-202ENST00000561713 ZSWIM5Q9P217 1185 aa22.21■■□□□ 1.15
VPS35-202ENST00000561713 TANC1Q9C0D5 1861 aa22.21■■□□□ 1.15
VPS35-202ENST00000561713 LOC102724159A0A0B4J2E5 919 aa22.19■■□□□ 1.14
VPS35-202ENST00000561713 DHX16O60231 1041 aaKnown RBP22.19■■□□□ 1.14
VPS35-202ENST00000561713 PWP2Q15269 919 aaKnown RBP22.19■■□□□ 1.14
VPS35-202ENST00000561713 SKIV2LQ15477 1246 aaKnown RBP22.19■■□□□ 1.14
VPS35-202ENST00000561713 ADGRF4Q8IZF3 695 aa22.19■■□□□ 1.14
VPS35-202ENST00000561713 MTCH2Q9Y6C9 303 aa22.19■■□□□ 1.14
VPS35-202ENST00000561713 MYH7BA7E2Y1 1941 aa22.19■■□□□ 1.14
VPS35-202ENST00000561713 TCF20Q9UGU0 1960 aaKnown RBP22.19■■□□□ 1.14
VPS35-202ENST00000561713 EPOPA6NHQ4 379 aa22.18■■□□□ 1.14
VPS35-202ENST00000561713 KCNQ1P51787 676 aa22.18■■□□□ 1.14
VPS35-202ENST00000561713 PDE4DQ08499 809 aa22.18■■□□□ 1.14
VPS35-202ENST00000561713 QRICH1Q2TAL8 776 aa22.18■■□□□ 1.14
VPS35-202ENST00000561713 CYB5R4Q7L1T6 521 aa22.18■■□□□ 1.14
VPS35-202ENST00000561713 TBC1D5Q92609 795 aa22.18■■□□□ 1.14
VPS35-202ENST00000561713 COPS5Q92905 334 aa22.18■■□□□ 1.14
VPS35-202ENST00000561713 UBAC1Q9BSL1 405 aa22.18■■□□□ 1.14
VPS35-202ENST00000561713 CTNNA3Q9UI47 895 aa22.18■■□□□ 1.14
VPS35-202ENST00000561713 TAF6LQ9Y6J9 622 aa22.18■■□□□ 1.14
VPS35-202ENST00000561713 RAD50Q92878 1312 aa22.17■■□□□ 1.14
VPS35-202ENST00000561713 ARHGEF15O94989 841 aa22.17■■□□□ 1.14
VPS35-202ENST00000561713 IQCF3P0C7M6 154 aa22.17■■□□□ 1.14
VPS35-202ENST00000561713 ACTN1P12814 892 aa22.17■■□□□ 1.14
VPS35-202ENST00000561713 PTH1RQ03431 593 aa22.17■■□□□ 1.14
VPS35-202ENST00000561713 PPP2R5BQ15173 497 aa22.17■■□□□ 1.14
VPS35-202ENST00000561713 ASPRV1Q53RT3 343 aa22.17■■□□□ 1.14
VPS35-202ENST00000561713 KRT40Q6A162 431 aa22.17■■□□□ 1.14
VPS35-202ENST00000561713 NFRKBQ6P4R8 1299 aa22.17■■□□□ 1.14
VPS35-202ENST00000561713 STAG2Q8N3U4 1231 aa22.17■■□□□ 1.14
VPS35-202ENST00000561713 KRT23Q9C075 422 aa22.17■■□□□ 1.14
VPS35-202ENST00000561713 VAT1LQ9HCJ6 419 aa22.17■■□□□ 1.14
VPS35-202ENST00000561713 COL20A1Q9P218 1284 aa22.17■■□□□ 1.14
VPS35-202ENST00000561713 A6NJR5 290 aa22.16■■□□□ 1.14
VPS35-202ENST00000561713 PARP1P09874 1014 aaKnown RBP22.16■■□□□ 1.14
VPS35-202ENST00000561713 POU3F3P20264 500 aaPredicted RBP22.16■■□□□ 1.14
VPS35-202ENST00000561713 EDNRBP24530 442 aa22.16■■□□□ 1.14
VPS35-202ENST00000561713 RFC2P35250 354 aa22.16■■□□□ 1.14
VPS35-202ENST00000561713 BRDTQ58F21 947 aaPredicted RBP22.16■■□□□ 1.14
VPS35-202ENST00000561713 ANKS1AQ92625 1134 aa22.16■■□□□ 1.14
VPS35-202ENST00000561713 SLC9A7Q96T83 725 aa22.16■■□□□ 1.14
VPS35-202ENST00000561713 FTOQ9C0B1 505 aaKnown RBP eCLIP22.16■■□□□ 1.14
VPS35-202ENST00000561713 PRRC2BQ5JSZ5 2229 aaKnown RBP22.16■■□□□ 1.14
VPS35-202ENST00000561713 PITPNM1O00562 1244 aa22.15■■□□□ 1.14
VPS35-202ENST00000561713 NKRFO15226 690 aaKnown RBP eCLIP22.15■■□□□ 1.14
VPS35-202ENST00000561713 GTPBP6O43824 516 aaPredicted RBP22.15■■□□□ 1.14
VPS35-202ENST00000561713 ARIH2O95376 493 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms