RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 AK8Q96MA6 479 aa24.04■■□□□ 1.44
CLN3-209ENST00000561689 RIPK3Q9Y572 518 aa24.04■■□□□ 1.44
CLN3-209ENST00000561689 FAM86B1E9PN63 330 aa24.03■■□□□ 1.44
CLN3-209ENST00000561689 FAM86B2P0C5J1 330 aa24.03■■□□□ 1.44
CLN3-209ENST00000561689 PRR29P0C7W0 189 aa24.03■■□□□ 1.44
CLN3-209ENST00000561689 HSD17B4P51659 736 aa24.03■■□□□ 1.44
CLN3-209ENST00000561689 UBXN2AP68543 259 aa24.03■■□□□ 1.44
CLN3-209ENST00000561689 POSTNQ15063 836 aa24.03■■□□□ 1.44
CLN3-209ENST00000561689 E2F4Q16254 413 aa24.03■■□□□ 1.44
CLN3-209ENST00000561689 ELOA2Q8IYF1 753 aaPredicted RBP24.03■■□□□ 1.44
CLN3-209ENST00000561689 CEP57L1Q8IYX8 460 aa24.03■■□□□ 1.44
CLN3-209ENST00000561689 IQUBQ8NA54 791 aa24.03■■□□□ 1.44
CLN3-209ENST00000561689 RASSF8Q8NHQ8 419 aa24.03■■□□□ 1.44
CLN3-209ENST00000561689 MBOAT7Q96N66 472 aa24.03■■□□□ 1.44
CLN3-209ENST00000561689 TRERF1Q96PN7 1200 aa24.03■■□□□ 1.44
CLN3-209ENST00000561689 TTC12Q9H892 705 aaPredicted RBP24.03■■□□□ 1.44
CLN3-209ENST00000561689 HOXC10Q9NYD6 342 aa24.03■■□□□ 1.44
CLN3-209ENST00000561689 HOOK1Q9UJC3 728 aaKnown RBP24.03■■□□□ 1.44
CLN3-209ENST00000561689 MYH7BA7E2Y1 1941 aa24.03■■□□□ 1.44
CLN3-209ENST00000561689 A0A0G2JLL6 359 aaPredicted RBP24.03■■□□□ 1.44
CLN3-209ENST00000561689 SPDYE16A6NNV3 312 aaPredicted RBP24.03■■□□□ 1.44
CLN3-209ENST00000561689 FXR2P51116 673 aaKnown RBP eCLIP24.03■■□□□ 1.44
CLN3-209ENST00000561689 TMEM132BQ14DG7 1078 aa24.03■■□□□ 1.44
CLN3-209ENST00000561689 LDLRAD1Q5T700 205 aa24.03■■□□□ 1.44
CLN3-209ENST00000561689 MOXD1Q6UVY6 613 aa24.03■■□□□ 1.44
CLN3-209ENST00000561689 PRRT2Q7Z6L0 340 aaPredicted RBP24.03■■□□□ 1.44
CLN3-209ENST00000561689 MCF2L2Q86YR7 1114 aa24.03■■□□□ 1.44
CLN3-209ENST00000561689 IGSF22Q8N9C0 903 aa24.03■■□□□ 1.44
CLN3-209ENST00000561689 ZNF526Q8TF50 670 aaPredicted RBP24.03■■□□□ 1.44
CLN3-209ENST00000561689 PLIN2Q99541 437 aa24.03■■□□□ 1.44
CLN3-209ENST00000561689 AFMP43652 599 aa24.02■■□□□ 1.44
CLN3-209ENST00000561689 TMEM266Q2M3C6 531 aa24.02■■□□□ 1.44
CLN3-209ENST00000561689 ISM2Q6H9L7 571 aa24.02■■□□□ 1.44
CLN3-209ENST00000561689 SNRNP48Q6IEG0 339 aaKnown RBP24.02■■□□□ 1.44
CLN3-209ENST00000561689 KANK3Q6NY19 840 aa24.02■■□□□ 1.44
CLN3-209ENST00000561689 CYP2W1Q8TAV3 490 aa24.02■■□□□ 1.44
CLN3-209ENST00000561689 PAGE5Q96GU1 130 aa24.02■■□□□ 1.44
CLN3-209ENST00000561689 CCSER1Q9C0I3 900 aa24.02■■□□□ 1.44
CLN3-209ENST00000561689 COL20A1Q9P218 1284 aa24.02■■□□□ 1.44
CLN3-209ENST00000561689 ZNF214Q9UL59 606 aaPredicted RBP24.02■■□□□ 1.44
CLN3-209ENST00000561689 PCDHA5Q9Y5H7 936 aa24.02■■□□□ 1.44
CLN3-209ENST00000561689 CXCL11O14625 94 aa24.02■■□□□ 1.43
CLN3-209ENST00000561689 CYP3A4P08684 503 aa24.02■■□□□ 1.43
CLN3-209ENST00000561689 ZNF76P36508 570 aa24.02■■□□□ 1.43
CLN3-209ENST00000561689 PPIL2Q13356 520 aa24.02■■□□□ 1.43
CLN3-209ENST00000561689 C11orf57Q6ZUT1 292 aaPredicted RBP24.02■■□□□ 1.43
CLN3-209ENST00000561689 CABP7Q86V35 215 aa24.02■■□□□ 1.43
CLN3-209ENST00000561689 NMRK2Q9NPI5 230 aa24.02■■□□□ 1.43
CLN3-209ENST00000561689 DISC1Q9NRI5 854 aa24.02■■□□□ 1.43
CLN3-209ENST00000561689 ANO10Q9NW15 660 aa24.02■■□□□ 1.43
CLN3-209ENST00000561689 LRWD1Q9UFC0 647 aa24.02■■□□□ 1.43
CLN3-209ENST00000561689 TUBE1Q9UJT0 475 aa24.02■■□□□ 1.43
CLN3-209ENST00000561689 PNMA2Q9UL42 364 aa24.02■■□□□ 1.43
CLN3-209ENST00000561689 POTEMA6NI47 508 aa24.01■■□□□ 1.43
CLN3-209ENST00000561689 CIITAP33076 1130 aa24.01■■□□□ 1.43
CLN3-209ENST00000561689 FAM200AQ8TCP9 573 aa24.01■■□□□ 1.43
CLN3-209ENST00000561689 LENG9Q96B70 501 aa24.01■■□□□ 1.43
CLN3-209ENST00000561689 PYM1Q9BRP8 204 aaKnown RBP24.01■■□□□ 1.43
CLN3-209ENST00000561689 KCNMB3Q9NPA1 279 aa24.01■■□□□ 1.43
CLN3-209ENST00000561689 RNF146Q9NTX7 359 aa24.01■■□□□ 1.43
CLN3-209ENST00000561689 USP25Q9UHP3 1055 aa24.01■■□□□ 1.43
CLN3-209ENST00000561689 STAT6P42226 847 aa24■■□□□ 1.43
CLN3-209ENST00000561689 OAZ1P54368 228 aa24■■□□□ 1.43
CLN3-209ENST00000561689 Q4G0T1 1027 aa24■■□□□ 1.43
CLN3-209ENST00000561689 PDXDC2PQ6P474 469 aa24■■□□□ 1.43
CLN3-209ENST00000561689 STAMQ92783 540 aa24■■□□□ 1.43
CLN3-209ENST00000561689 CBX8Q9HC52 389 aa24■■□□□ 1.43
CLN3-209ENST00000561689 PCDHA12Q9UN75 941 aa24■■□□□ 1.43
CLN3-209ENST00000561689 KCNH4Q9UQ05 1017 aa24■■□□□ 1.43
CLN3-209ENST00000561689 ZNF165P49910 485 aa24■■□□□ 1.43
CLN3-209ENST00000561689 PLS1Q14651 629 aa24■■□□□ 1.43
CLN3-209ENST00000561689 DPCR1Q3MIW9 517 aa24■■□□□ 1.43
CLN3-209ENST00000561689 RRAGBQ5VZM2 374 aa24■■□□□ 1.43
CLN3-209ENST00000561689 PROCA1Q8NCQ7 364 aaPredicted RBP24■■□□□ 1.43
CLN3-209ENST00000561689 SLC10A4Q96EP9 437 aa24■■□□□ 1.43
CLN3-209ENST00000561689 CCDC34Q96HJ3 373 aa24■■□□□ 1.43
CLN3-209ENST00000561689 ZFP91Q96JP5 570 aaPredicted RBP24■■□□□ 1.43
CLN3-209ENST00000561689 MMTAG2Q9BU76 263 aaKnown RBP24■■□□□ 1.43
CLN3-209ENST00000561689 RAB34Q9BZG1 259 aa24■■□□□ 1.43
CLN3-209ENST00000561689 EHMT1Q9H9B1 1298 aa24■■□□□ 1.43
CLN3-209ENST00000561689 MYPNQ86TC9 1320 aa23.99■■□□□ 1.43
CLN3-209ENST00000561689 CASP1P29466 404 aa23.99■■□□□ 1.43
CLN3-209ENST00000561689 RPS6P62753 249 aaKnown RBP23.99■■□□□ 1.43
CLN3-209ENST00000561689 PDIA5Q14554 519 aa23.99■■□□□ 1.43
CLN3-209ENST00000561689 NSMFQ6X4W1 530 aa23.99■■□□□ 1.43
CLN3-209ENST00000561689 SH3RF1Q7Z6J0 888 aa23.99■■□□□ 1.43
CLN3-209ENST00000561689 LUZP1Q86V48 1076 aa23.99■■□□□ 1.43
CLN3-209ENST00000561689 ETNPPLQ8TBG4 499 aa23.99■■□□□ 1.43
CLN3-209ENST00000561689 SYTL5Q8TDW5 730 aaPredicted RBP23.99■■□□□ 1.43
CLN3-209ENST00000561689 CCDC39Q9UFE4 941 aa23.99■■□□□ 1.43
CLN3-209ENST00000561689 RLFQ13129 1914 aa23.99■■□□□ 1.43
CLN3-209ENST00000561689 PEX10O60683 326 aa23.98■■□□□ 1.43
CLN3-209ENST00000561689 GJA5P36382 358 aa23.98■■□□□ 1.43
CLN3-209ENST00000561689 GHRHRQ02643 423 aa23.98■■□□□ 1.43
CLN3-209ENST00000561689 NAALADL2Q58DX5 795 aa23.98■■□□□ 1.43
CLN3-209ENST00000561689 POTEEQ6S8J3 1075 aa23.98■■□□□ 1.43
CLN3-209ENST00000561689 SLC30A10Q6XR72 485 aa23.98■■□□□ 1.43
CLN3-209ENST00000561689 TEX13BQ9BXU2 312 aa23.98■■□□□ 1.43
CLN3-209ENST00000561689 NLRP12P59046 1061 aa23.98■■□□□ 1.43
CLN3-209ENST00000561689 LRRC15Q8TF66 581 aa23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms