RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 MFSD6Q6ZSS7 791 aa19.3■□□□□ 0.68
CLN3-208ENST00000561505 TBC1D10CQ8IV04 446 aa19.3■□□□□ 0.68
CLN3-208ENST00000561505 CTAGE1Q96RT6 745 aa19.3■□□□□ 0.68
CLN3-208ENST00000561505 SLC9A7Q96T83 725 aa19.3■□□□□ 0.68
CLN3-208ENST00000561505 MPHOSPH6Q99547 160 aaKnown RBP19.3■□□□□ 0.68
CLN3-208ENST00000561505 RAD50Q92878 1312 aa19.29■□□□□ 0.68
CLN3-208ENST00000561505 B4DLN1 442 aa19.29■□□□□ 0.68
CLN3-208ENST00000561505 ARIH2O95376 493 aa19.29■□□□□ 0.68
CLN3-208ENST00000561505 BMP1P13497 986 aa19.29■□□□□ 0.68
CLN3-208ENST00000561505 MRPL12P52815 198 aaKnown RBP19.29■□□□□ 0.68
CLN3-208ENST00000561505 GPNMBQ14956 572 aa19.29■□□□□ 0.68
CLN3-208ENST00000561505 RRP12Q5JTH9 1297 aaKnown RBP19.29■□□□□ 0.68
CLN3-208ENST00000561505 PPM1EQ8WY54 764 aa19.29■□□□□ 0.68
CLN3-208ENST00000561505 COPS5Q92905 334 aa19.29■□□□□ 0.68
CLN3-208ENST00000561505 RNF41Q9H4P4 317 aaPredicted RBP19.29■□□□□ 0.68
CLN3-208ENST00000561505 GPHNQ9NQX3 736 aaPredicted RBP19.29■□□□□ 0.68
CLN3-208ENST00000561505 TOMM22Q9NS69 142 aa19.29■□□□□ 0.68
CLN3-208ENST00000561505 TXNP10599 105 aaKnown RBP19.28■□□□□ 0.68
CLN3-208ENST00000561505 IGFBP4P22692 258 aa19.28■□□□□ 0.68
CLN3-208ENST00000561505 TMEM67Q5HYA8 995 aa19.28■□□□□ 0.68
CLN3-208ENST00000561505 SMC5Q8IY18 1101 aa19.28■□□□□ 0.68
CLN3-208ENST00000561505 ADAMTS19Q8TE59 1207 aa19.28■□□□□ 0.68
CLN3-208ENST00000561505 ESR2Q92731 530 aa19.28■□□□□ 0.68
CLN3-208ENST00000561505 OSBPL3Q9H4L5 887 aa19.28■□□□□ 0.68
CLN3-208ENST00000561505 SCN5AQ14524 2016 aa19.27■□□□□ 0.68
CLN3-208ENST00000561505 ACTN1P12814 892 aa19.27■□□□□ 0.68
CLN3-208ENST00000561505 HAND2P61296 217 aa19.27■□□□□ 0.68
CLN3-208ENST00000561505 GHRHRQ02643 423 aa19.27■□□□□ 0.68
CLN3-208ENST00000561505 CCDC85BQ15834 202 aaPredicted RBP19.27■□□□□ 0.68
CLN3-208ENST00000561505 CCDC178Q5BJE1 867 aa19.27■□□□□ 0.68
CLN3-208ENST00000561505 SYTL5Q8TDW5 730 aaPredicted RBP19.27■□□□□ 0.68
CLN3-208ENST00000561505 TBC1D5Q92609 795 aa19.27■□□□□ 0.68
CLN3-208ENST00000561505 MTCH2Q9Y6C9 303 aa19.27■□□□□ 0.68
CLN3-208ENST00000561505 NEDD4P46934 1319 aa19.26■□□□□ 0.67
CLN3-208ENST00000561505 TANC1Q9C0D5 1861 aa19.26■□□□□ 0.67
CLN3-208ENST00000561505 ZBBXA8MT70 800 aa19.26■□□□□ 0.67
CLN3-208ENST00000561505 BAIAP3O94812 1187 aa19.26■□□□□ 0.67
CLN3-208ENST00000561505 CA3P07451 260 aa19.26■□□□□ 0.67
CLN3-208ENST00000561505 SDSP20132 328 aa19.26■□□□□ 0.67
CLN3-208ENST00000561505 ARHGAP1Q07960 439 aa19.26■□□□□ 0.67
CLN3-208ENST00000561505 BFSP2Q13515 415 aa19.26■□□□□ 0.67
CLN3-208ENST00000561505 AAMPQ13685 434 aa19.26■□□□□ 0.67
CLN3-208ENST00000561505 DEFB128Q7Z7B8 93 aa19.26■□□□□ 0.67
CLN3-208ENST00000561505 CAGE1Q8TC20 777 aa19.26■□□□□ 0.67
CLN3-208ENST00000561505 KAT2BQ92831 832 aa19.26■□□□□ 0.67
CLN3-208ENST00000561505 EMID1Q96A84 441 aaPredicted RBP19.26■□□□□ 0.67
CLN3-208ENST00000561505 IWS1Q96ST2 819 aa19.26■□□□□ 0.67
CLN3-208ENST00000561505 COL20A1Q9P218 1284 aa19.26■□□□□ 0.67
CLN3-208ENST00000561505 ZBTB47Q9UFB7 747 aaPredicted RBP19.26■□□□□ 0.67
CLN3-208ENST00000561505 ABCB11O95342 1321 aa19.25■□□□□ 0.67
CLN3-208ENST00000561505 MFAP1P55081 439 aaKnown RBP19.25■□□□□ 0.67
CLN3-208ENST00000561505 TAP1Q03518 808 aa19.25■□□□□ 0.67
CLN3-208ENST00000561505 HERC6Q8IVU3 1022 aa19.25■□□□□ 0.67
CLN3-208ENST00000561505 RETREG2Q8NC44 543 aa19.25■□□□□ 0.67
CLN3-208ENST00000561505 PNMA1Q8ND90 353 aa19.25■□□□□ 0.67
CLN3-208ENST00000561505 AFAP1L1Q8TED9 768 aa19.25■□□□□ 0.67
CLN3-208ENST00000561505 CRBNQ96SW2 442 aa19.25■□□□□ 0.67
CLN3-208ENST00000561505 UHRF1Q96T88 793 aaPredicted RBP19.25■□□□□ 0.67
CLN3-208ENST00000561505 UBA5Q9GZZ9 404 aa19.25■□□□□ 0.67
CLN3-208ENST00000561505 TSPYL2Q9H2G4 693 aaPredicted RBP19.25■□□□□ 0.67
CLN3-208ENST00000561505 TET1Q8NFU7 2136 aa19.25■□□□□ 0.67
CLN3-208ENST00000561505 ARHGEF15O94989 841 aa19.24■□□□□ 0.67
CLN3-208ENST00000561505 CXCL10P02778 98 aa19.24■□□□□ 0.67
CLN3-208ENST00000561505 MMP3P08254 477 aa19.24■□□□□ 0.67
CLN3-208ENST00000561505 GOLGA8HP0CJ92 632 aa19.24■□□□□ 0.67
CLN3-208ENST00000561505 HOXD8P13378 290 aaPredicted RBP19.24■□□□□ 0.67
CLN3-208ENST00000561505 ADGRF4Q8IZF3 695 aa19.24■□□□□ 0.67
CLN3-208ENST00000561505 NSUN6Q8TEA1 469 aaKnown RBP19.24■□□□□ 0.67
CLN3-208ENST00000561505 AFG1LQ8WV93 481 aa19.24■□□□□ 0.67
CLN3-208ENST00000561505 TAAR1Q96RJ0 339 aa19.24■□□□□ 0.67
CLN3-208ENST00000561505 CPVLQ9H3G5 476 aa19.24■□□□□ 0.67
CLN3-208ENST00000561505 PRRC2BQ5JSZ5 2229 aaKnown RBP19.23■□□□□ 0.67
CLN3-208ENST00000561505 EPOPA6NHQ4 379 aa19.23■□□□□ 0.67
CLN3-208ENST00000561505 HAS3O00219 553 aa19.23■□□□□ 0.67
CLN3-208ENST00000561505 ZNF213O14771 459 aa19.23■□□□□ 0.67
CLN3-208ENST00000561505 PARNO95453 639 aaKnown RBP19.23■□□□□ 0.67
CLN3-208ENST00000561505 GH1P01241 217 aa19.23■□□□□ 0.67
CLN3-208ENST00000561505 CDC37Q16543 378 aaPredicted RBP19.23■□□□□ 0.67
CLN3-208ENST00000561505 ASPRV1Q53RT3 343 aa19.23■□□□□ 0.67
CLN3-208ENST00000561505 FAM47CQ5HY64 1035 aa19.23■□□□□ 0.67
CLN3-208ENST00000561505 PLEKHM2Q8IWE5 1019 aa19.23■□□□□ 0.67
CLN3-208ENST00000561505 DHX38Q92620 1227 aaKnown RBP19.23■□□□□ 0.67
CLN3-208ENST00000561505 DDX41Q9UJV9 622 aaKnown RBP19.23■□□□□ 0.67
CLN3-208ENST00000561505 XIRP2A4UGR9 3374 aa19.22■□□□□ 0.67
CLN3-208ENST00000561505 LPXNO60711 386 aa19.22■□□□□ 0.67
CLN3-208ENST00000561505 COL9A1P20849 921 aa19.22■□□□□ 0.67
CLN3-208ENST00000561505 STXBP2Q15833 593 aa19.22■□□□□ 0.67
CLN3-208ENST00000561505 PTGISQ16647 500 aa19.22■□□□□ 0.67
CLN3-208ENST00000561505 LY6KQ17RY6 165 aa19.22■□□□□ 0.67
CLN3-208ENST00000561505 AAK1Q2M2I8 961 aa19.22■□□□□ 0.67
CLN3-208ENST00000561505 USH1GQ495M9 461 aa19.22■□□□□ 0.67
CLN3-208ENST00000561505 GDF6Q6KF10 455 aaPredicted RBP19.22■□□□□ 0.67
CLN3-208ENST00000561505 IQCA1Q86XH1 822 aa19.22■□□□□ 0.67
CLN3-208ENST00000561505 MCF2L2Q86YR7 1114 aa19.22■□□□□ 0.67
CLN3-208ENST00000561505 PPP1R13LQ8WUF5 828 aa19.22■□□□□ 0.67
CLN3-208ENST00000561505 MTMR8Q96EF0 704 aa19.22■□□□□ 0.67
CLN3-208ENST00000561505 ZSCAN10Q96SZ4 725 aaPredicted RBP19.22■□□□□ 0.67
CLN3-208ENST00000561505 ZKSCAN3Q9BRR0 538 aa19.22■□□□□ 0.67
CLN3-208ENST00000561505 DSCC1Q9BVC3 393 aa19.22■□□□□ 0.67
CLN3-208ENST00000561505 JMJD4Q9H9V9 463 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms