RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 ATG4CQ96DT6 458 aa7.33□□□□□ -1.24
SPG11-221ENST00000560299 OCEL1Q9H607 264 aa7.33□□□□□ -1.24
SPG11-221ENST00000560299 BIN2Q9UBW5 565 aaPredicted RBP7.33□□□□□ -1.24
SPG11-221ENST00000560299 RABGAP1Q9Y3P9 1069 aa7.33□□□□□ -1.24
SPG11-221ENST00000560299 MYH15Q9Y2K3 1946 aa7.33□□□□□ -1.24
SPG11-221ENST00000560299 SPDYE16A6NNV3 312 aaPredicted RBP7.32□□□□□ -1.24
SPG11-221ENST00000560299 M0R2N6 131 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 LAD1O00515 517 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 PPP6R2O75170 966 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 SLC25A27O95847 323 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 CFBP00751 764 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 ALAS1P13196 640 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 GCFC2P16383 781 aaKnown RBP7.32□□□□□ -1.24
SPG11-221ENST00000560299 STAT3P40763 770 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 ME1P48163 572 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 USP11P51784 963 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 EMP3P54852 163 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 SP3Q02447 781 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 CRHR2Q13324 411 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 PLS1Q14651 629 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 SLC39A14Q15043 492 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 TAF1CQ15572 869 aaPredicted RBP7.32□□□□□ -1.24
SPG11-221ENST00000560299 INF2Q27J81 1249 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 TTC38Q5R3I4 469 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 TREML2Q5T2D2 321 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 JAKMIP3Q5VZ66 844 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 CTU1Q7Z7A3 348 aaKnown RBP7.32□□□□□ -1.24
SPG11-221ENST00000560299 NEK8Q86SG6 692 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 LINC00301Q8NCQ3 95 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 LEO1Q8WVC0 666 aaPredicted RBP7.32□□□□□ -1.24
SPG11-221ENST00000560299 TNFRSF25Q93038 417 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 SYAP1Q96A49 352 aaPredicted RBP7.32□□□□□ -1.24
SPG11-221ENST00000560299 SHISA4Q96DD7 197 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 TRERF1Q96PN7 1200 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 USP28Q96RU2 1077 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 TEX13BQ9BXU2 312 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 ASCC2Q9H1I8 757 aaPredicted RBP7.32□□□□□ -1.24
SPG11-221ENST00000560299 GDPD2Q9HCC8 539 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 RAVER2Q9HCJ3 691 aaKnown RBP7.32□□□□□ -1.24
SPG11-221ENST00000560299 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.32□□□□□ -1.24
SPG11-221ENST00000560299 LMBRD1Q9NUN5 540 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 FBXO40Q9UH90 709 aa7.32□□□□□ -1.24
SPG11-221ENST00000560299 DDX49Q9Y6V7 483 aaKnown RBP7.32□□□□□ -1.24
SPG11-221ENST00000560299 MEIS2O14770 477 aa7.31□□□□□ -1.24
SPG11-221ENST00000560299 TRAK2O60296 914 aa7.31□□□□□ -1.24
SPG11-221ENST00000560299 MARCH6O60337 910 aa7.31□□□□□ -1.24
SPG11-221ENST00000560299 HOXD10P28358 340 aa7.31□□□□□ -1.24
SPG11-221ENST00000560299 CLK2P49760 499 aaKnown RBP7.31□□□□□ -1.24
SPG11-221ENST00000560299 LBX1P52954 281 aa7.31□□□□□ -1.24
SPG11-221ENST00000560299 HERVK_113P62684 666 aa7.31□□□□□ -1.24
SPG11-221ENST00000560299 CCNA1P78396 465 aa7.31□□□□□ -1.24
SPG11-221ENST00000560299 LACTBP83111 547 aaPredicted RBP7.31□□□□□ -1.24
SPG11-221ENST00000560299 IRF5Q13568 498 aa7.31□□□□□ -1.24
SPG11-221ENST00000560299 DGKZQ13574 1117 aa7.31□□□□□ -1.24
SPG11-221ENST00000560299 NBR1Q14596 966 aa7.31□□□□□ -1.24
SPG11-221ENST00000560299 UBE2SQ16763 222 aa7.31□□□□□ -1.24
SPG11-221ENST00000560299 ARL6IP4Q66PJ3 421 aaKnown RBP7.31□□□□□ -1.24
SPG11-221ENST00000560299 ADALQ6DHV7 355 aa7.31□□□□□ -1.24
SPG11-221ENST00000560299 SNRNP48Q6IEG0 339 aaKnown RBP7.31□□□□□ -1.24
SPG11-221ENST00000560299 CCAR1Q8IX12 1150 aaKnown RBP7.31□□□□□ -1.24
SPG11-221ENST00000560299 ABRAQ8N0Z2 381 aa7.31□□□□□ -1.24
SPG11-221ENST00000560299 KRI1Q8N9T8 703 aaKnown RBP7.31□□□□□ -1.24
SPG11-221ENST00000560299 SHCBP1Q8NEM2 672 aa7.31□□□□□ -1.24
SPG11-221ENST00000560299 CHST13Q8NET6 341 aa7.31□□□□□ -1.24
SPG11-221ENST00000560299 RASGRP4Q8TDF6 673 aa7.31□□□□□ -1.24
SPG11-221ENST00000560299 TBCKQ8TEA7 893 aa7.31□□□□□ -1.24
SPG11-221ENST00000560299 SMCR8Q8TEV9 937 aaPredicted RBP7.31□□□□□ -1.24
SPG11-221ENST00000560299 ZNF296Q8WUU4 475 aaPredicted RBP7.31□□□□□ -1.24
SPG11-221ENST00000560299 FERMT2Q96AC1 680 aa7.31□□□□□ -1.24
SPG11-221ENST00000560299 AGBL1Q96MI9 1066 aa7.31□□□□□ -1.24
SPG11-221ENST00000560299 P2RX7Q99572 595 aaKnown RBP7.31□□□□□ -1.24
SPG11-221ENST00000560299 ACAD9Q9H845 621 aa7.31□□□□□ -1.24
SPG11-221ENST00000560299 PCDHB6Q9Y5E3 794 aa7.31□□□□□ -1.24
SPG11-221ENST00000560299 CLIC4Q9Y696 253 aa7.31□□□□□ -1.24
SPG11-221ENST00000560299 MORC2Q9Y6X9 1032 aaPredicted RBP7.31□□□□□ -1.24
SPG11-221ENST00000560299 ZNF536O15090 1300 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 PARP14Q460N5 1801 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 A0A1W2PQ27 194 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 A0A1W2PQ64 194 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 A0A1W2PQD8 194 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 B4DLN1 442 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 STRNO43815 780 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 NEMFO60524 1076 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 CCNT1O60563 726 aaKnown RBP7.3□□□□□ -1.24
SPG11-221ENST00000560299 CUTAO60888 179 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 XRCC5P13010 732 aaKnown RBP7.3□□□□□ -1.24
SPG11-221ENST00000560299 MCM7P33993 719 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 ZNF76P36508 570 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 TOB1P50616 345 aaPredicted RBP7.3□□□□□ -1.24
SPG11-221ENST00000560299 HSD17B4P51659 736 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 MKRN3Q13064 507 aaKnown RBP7.3□□□□□ -1.24
SPG11-221ENST00000560299 GRM1Q13255 1194 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 KIF22Q14807 665 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 TMEM132BQ14DG7 1078 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 ZNF174Q15697 407 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 KLHL40Q2TBA0 621 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 LETM2Q2VYF4 491 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 EARS2Q5JPH6 523 aaKnown RBP7.3□□□□□ -1.24
SPG11-221ENST00000560299 PPP4R3AQ6IN85 833 aa7.3□□□□□ -1.24
SPG11-221ENST00000560299 USP17L6PQ6QN14 398 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms