RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 SCN10AQ9Y5Y9 1956 aa20.65■□□□□ 0.9
HDDC3-205ENST00000559898 MYH7BA7E2Y1 1941 aa20.65■□□□□ 0.9
HDDC3-205ENST00000559898 CFBP00751 764 aa20.65■□□□□ 0.9
HDDC3-205ENST00000559898 EIF2AK2P19525 551 aaKnown RBP20.65■□□□□ 0.9
HDDC3-205ENST00000559898 HOXA13P31271 388 aaPredicted RBP20.65■□□□□ 0.9
HDDC3-205ENST00000559898 PURAQ00577 322 aaKnown RBP20.65■□□□□ 0.9
HDDC3-205ENST00000559898 WTAPQ15007 396 aa20.65■□□□□ 0.9
HDDC3-205ENST00000559898 LY6KQ17RY6 165 aa20.65■□□□□ 0.9
HDDC3-205ENST00000559898 TMEM67Q5HYA8 995 aa20.65■□□□□ 0.9
HDDC3-205ENST00000559898 MFSD5Q6N075 450 aa20.65■□□□□ 0.9
HDDC3-205ENST00000559898 SEPT14Q6ZU15 432 aa20.65■□□□□ 0.9
HDDC3-205ENST00000559898 RALYLQ86SE5 291 aaKnown RBP20.65■□□□□ 0.9
HDDC3-205ENST00000559898 VWCEQ96DN2 955 aa20.65■□□□□ 0.9
HDDC3-205ENST00000559898 LY9Q9HBG7 655 aa20.65■□□□□ 0.9
HDDC3-205ENST00000559898 PNMA2Q9UL42 364 aa20.65■□□□□ 0.9
HDDC3-205ENST00000559898 MRPL11Q9Y3B7 192 aaKnown RBP20.65■□□□□ 0.9
HDDC3-205ENST00000559898 SCN5AQ14524 2016 aa20.65■□□□□ 0.9
HDDC3-205ENST00000559898 MROH7Q68CQ1 1323 aa20.64■□□□□ 0.89
HDDC3-205ENST00000559898 LOC102724159A0A0B4J2E5 919 aa20.64■□□□□ 0.89
HDDC3-205ENST00000559898 SLC27A2O14975 620 aa20.64■□□□□ 0.89
HDDC3-205ENST00000559898 ZBTB5O15062 677 aa20.64■□□□□ 0.89
HDDC3-205ENST00000559898 TXNP10599 105 aaKnown RBP20.64■□□□□ 0.89
HDDC3-205ENST00000559898 PPP2R5BQ15173 497 aa20.64■□□□□ 0.89
HDDC3-205ENST00000559898 PWP2Q15269 919 aaKnown RBP20.64■□□□□ 0.89
HDDC3-205ENST00000559898 CCDC62Q6P9F0 684 aa20.64■□□□□ 0.89
HDDC3-205ENST00000559898 RAB11FIP4Q86YS3 637 aa20.64■□□□□ 0.89
HDDC3-205ENST00000559898 IL31RAQ8NI17 732 aa20.64■□□□□ 0.89
HDDC3-205ENST00000559898 RNPC3Q96LT9 517 aaKnown RBP20.64■□□□□ 0.89
HDDC3-205ENST00000559898 RMDN3Q96TC7 470 aa20.64■□□□□ 0.89
HDDC3-205ENST00000559898 AMNQ9BXJ7 453 aa20.64■□□□□ 0.89
HDDC3-205ENST00000559898 LRRC2Q9BYS8 371 aa20.64■□□□□ 0.89
HDDC3-205ENST00000559898 TTYH1Q9H313 450 aaPredicted RBP20.64■□□□□ 0.89
HDDC3-205ENST00000559898 RIOX1Q9H6W3 641 aa20.64■□□□□ 0.89
HDDC3-205ENST00000559898 TRMT13Q9NUP7 481 aaKnown RBP20.64■□□□□ 0.89
HDDC3-205ENST00000559898 HSD17B4P51659 736 aa20.63■□□□□ 0.89
HDDC3-205ENST00000559898 CCL23P55773 120 aa20.63■□□□□ 0.89
HDDC3-205ENST00000559898 TMEM240Q5SV17 173 aa20.63■□□□□ 0.89
HDDC3-205ENST00000559898 SCFD2Q8WU76 684 aa20.63■□□□□ 0.89
HDDC3-205ENST00000559898 WNT8AQ9H1J5 351 aa20.63■□□□□ 0.89
HDDC3-205ENST00000559898 PXMP2Q9NR77 195 aa20.63■□□□□ 0.89
HDDC3-205ENST00000559898 PCDHA1Q9Y5I3 950 aa20.63■□□□□ 0.89
HDDC3-205ENST00000559898 GRXCR1A8MXD5 290 aa20.62■□□□□ 0.89
HDDC3-205ENST00000559898 TLR3O15455 904 aaKnown RBP20.62■□□□□ 0.89
HDDC3-205ENST00000559898 SORBS3O60504 671 aa20.62■□□□□ 0.89
HDDC3-205ENST00000559898 CABYRO75952 493 aa20.62■□□□□ 0.89
HDDC3-205ENST00000559898 RGS20O76081 388 aa20.62■□□□□ 0.89
HDDC3-205ENST00000559898 CYP2C9P11712 490 aa20.62■□□□□ 0.89
HDDC3-205ENST00000559898 RXRAP19793 462 aa20.62■□□□□ 0.89
HDDC3-205ENST00000559898 ARHGAP1Q07960 439 aa20.62■□□□□ 0.89
HDDC3-205ENST00000559898 CMTR1Q8N1G2 835 aaKnown RBP20.62■□□□□ 0.89
HDDC3-205ENST00000559898 GPKOWQ92917 476 aaPredicted RBP eCLIP20.62■□□□□ 0.89
HDDC3-205ENST00000559898 NOC4LQ9BVI4 516 aaKnown RBP20.62■□□□□ 0.89
HDDC3-205ENST00000559898 ALDH8A1Q9H2A2 487 aaPredicted RBP20.62■□□□□ 0.89
HDDC3-205ENST00000559898 GBF1Q92538 1859 aa20.62■□□□□ 0.89
HDDC3-205ENST00000559898 EYSQ5T1H1 3165 aa20.61■□□□□ 0.89
HDDC3-205ENST00000559898 DOCK5Q9H7D0 1870 aa20.61■□□□□ 0.89
HDDC3-205ENST00000559898 PRC1O43663 620 aa20.61■□□□□ 0.89
HDDC3-205ENST00000559898 ZEB2O60315 1214 aa20.61■□□□□ 0.89
HDDC3-205ENST00000559898 NECTIN1Q15223 517 aa20.61■□□□□ 0.89
HDDC3-205ENST00000559898 NBPF20Q3BBV1 942 aa20.61■□□□□ 0.89
HDDC3-205ENST00000559898 ARHGEF16Q5VV41 709 aa20.61■□□□□ 0.89
HDDC3-205ENST00000559898 CREB3L3Q68CJ9 461 aa20.61■□□□□ 0.89
HDDC3-205ENST00000559898 MCF2L2Q86YR7 1114 aa20.61■□□□□ 0.89
HDDC3-205ENST00000559898 NSUN6Q8TEA1 469 aaKnown RBP20.61■□□□□ 0.89
HDDC3-205ENST00000559898 AFG1LQ8WV93 481 aa20.61■□□□□ 0.89
HDDC3-205ENST00000559898 SCLYQ96I15 445 aa20.61■□□□□ 0.89
HDDC3-205ENST00000559898 CDH23Q9H251 3354 aa20.6■□□□□ 0.89
HDDC3-205ENST00000559898 ERICH2A1L162 156 aa20.6■□□□□ 0.89
HDDC3-205ENST00000559898 A6NJR5 290 aa20.6■□□□□ 0.89
HDDC3-205ENST00000559898 SH2B2O14492 632 aaPredicted RBP20.6■□□□□ 0.89
HDDC3-205ENST00000559898 PLEKHA8P1O95397 391 aa20.6■□□□□ 0.89
HDDC3-205ENST00000559898 NR3C2P08235 984 aa20.6■□□□□ 0.89
HDDC3-205ENST00000559898 GHRHRQ02643 423 aa20.6■□□□□ 0.89
HDDC3-205ENST00000559898 ZNF365Q70YC5 407 aa20.6■□□□□ 0.89
HDDC3-205ENST00000559898 ZNF654Q8IZM8 581 aa20.6■□□□□ 0.89
HDDC3-205ENST00000559898 MTG1Q9BT17 334 aaPredicted RBP20.6■□□□□ 0.89
HDDC3-205ENST00000559898 SEMA6BQ9H3T3 888 aa20.6■□□□□ 0.89
HDDC3-205ENST00000559898 HIPK3Q9H422 1215 aa20.6■□□□□ 0.89
HDDC3-205ENST00000559898 BCAS3Q9H6U6 928 aa20.6■□□□□ 0.89
HDDC3-205ENST00000559898 ANO2Q9NQ90 1003 aa20.6■□□□□ 0.89
HDDC3-205ENST00000559898 CXXC1Q9P0U4 656 aaPredicted RBP20.6■□□□□ 0.89
HDDC3-205ENST00000559898 MYCLP12524 364 aaPredicted RBP20.59■□□□□ 0.89
HDDC3-205ENST00000559898 PBX2P40425 430 aa20.59■□□□□ 0.89
HDDC3-205ENST00000559898 CPT1AP50416 773 aa20.59■□□□□ 0.89
HDDC3-205ENST00000559898 CHMP4BP1P59074 171 aa20.59■□□□□ 0.89
HDDC3-205ENST00000559898 TTLL4Q14679 1199 aa20.59■□□□□ 0.89
HDDC3-205ENST00000559898 STXBP2Q15833 593 aa20.59■□□□□ 0.89
HDDC3-205ENST00000559898 CENPQQ7L2Z9 268 aaPredicted RBP20.59■□□□□ 0.89
HDDC3-205ENST00000559898 PDCD2LQ9BRP1 358 aa20.59■□□□□ 0.89
HDDC3-205ENST00000559898 POLR3EQ9NVU0 708 aa20.59■□□□□ 0.89
HDDC3-205ENST00000559898 DDX41Q9UJV9 622 aaKnown RBP20.59■□□□□ 0.89
HDDC3-205ENST00000559898 hCG_1642624A0A1W2PR95 340 aa20.58■□□□□ 0.89
HDDC3-205ENST00000559898 NKRFO15226 690 aaKnown RBP eCLIP20.58■□□□□ 0.89
HDDC3-205ENST00000559898 MMP3P08254 477 aa20.58■□□□□ 0.89
HDDC3-205ENST00000559898 SMAD3P84022 425 aaKnown RBP20.58■□□□□ 0.89
HDDC3-205ENST00000559898 ZNF697Q5TEC3 545 aa20.58■□□□□ 0.89
HDDC3-205ENST00000559898 RASIP1Q5U651 963 aa20.58■□□□□ 0.89
HDDC3-205ENST00000559898 CATIPQ7Z7H3 387 aa20.58■□□□□ 0.89
HDDC3-205ENST00000559898 FCHSD1Q86WN1 690 aa20.58■□□□□ 0.89
HDDC3-205ENST00000559898 KAT2BQ92831 832 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms