RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 SBK1Q52WX2 424 aa14.7□□□□□ -0.06
SHMT2-230ENST00000557427 GIMAP6Q6P9H5 292 aa14.7□□□□□ -0.06
SHMT2-230ENST00000557427 EEPD1Q7L9B9 569 aa14.7□□□□□ -0.06
SHMT2-230ENST00000557427 CHST13Q8NET6 341 aa14.7□□□□□ -0.06
SHMT2-230ENST00000557427 RILPL2Q969X0 211 aa14.7□□□□□ -0.06
SHMT2-230ENST00000557427 MFSD14AQ96MC6 490 aa14.7□□□□□ -0.06
SHMT2-230ENST00000557427 NACAP1Q9BZK3 213 aa14.7□□□□□ -0.06
SHMT2-230ENST00000557427 EPB41L4AQ9HCS5 686 aaPredicted RBP14.7□□□□□ -0.06
SHMT2-230ENST00000557427 BAZ2AQ9UIF9 1905 aaKnown RBP14.7□□□□□ -0.06
SHMT2-230ENST00000557427 TANC1Q9C0D5 1861 aa14.69□□□□□ -0.06
SHMT2-230ENST00000557427 LINC01553A4QN01 128 aa14.69□□□□□ -0.06
SHMT2-230ENST00000557427 ZBED4O75132 1171 aa14.69□□□□□ -0.06
SHMT2-230ENST00000557427 PRDM1O75626 825 aa14.69□□□□□ -0.06
SHMT2-230ENST00000557427 BAIAP3O94812 1187 aa14.69□□□□□ -0.06
SHMT2-230ENST00000557427 IRS1P35568 1242 aa14.69□□□□□ -0.06
SHMT2-230ENST00000557427 TCF15Q12870 199 aa14.69□□□□□ -0.06
SHMT2-230ENST00000557427 IQSEC1Q6DN90 963 aa14.69□□□□□ -0.06
SHMT2-230ENST00000557427 FBXO16Q8IX29 292 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-230ENST00000557427 KIFC2Q96AC6 838 aa14.69□□□□□ -0.06
SHMT2-230ENST00000557427 TGS1Q96RS0 853 aaKnown RBP14.69□□□□□ -0.06
SHMT2-230ENST00000557427 ALG13Q9NP73 1137 aaKnown RBP14.69□□□□□ -0.06
SHMT2-230ENST00000557427 A1CFQ9NQ94 594 aaKnown RBP14.69□□□□□ -0.06
SHMT2-230ENST00000557427 HOMER2Q9NSB8 354 aa14.69□□□□□ -0.06
SHMT2-230ENST00000557427 FBXO40Q9UH90 709 aa14.69□□□□□ -0.06
SHMT2-230ENST00000557427 PITPNM1O00562 1244 aa14.68□□□□□ -0.06
SHMT2-230ENST00000557427 FOXK2Q01167 660 aa14.68□□□□□ -0.06
SHMT2-230ENST00000557427 NBPF20Q3BBV1 942 aa14.68□□□□□ -0.06
SHMT2-230ENST00000557427 PUS10Q3MIT2 529 aaKnown RBP14.68□□□□□ -0.06
SHMT2-230ENST00000557427 ZNF444Q8N0Y2 327 aaPredicted RBP14.68□□□□□ -0.06
SHMT2-230ENST00000557427 SNX21Q969T3 373 aa14.68□□□□□ -0.06
SHMT2-230ENST00000557427 SIP14410 1827 aa14.68□□□□□ -0.06
SHMT2-230ENST00000557427 GREB1LQ9C091 1923 aaPredicted RBP14.68□□□□□ -0.06
SHMT2-230ENST00000557427 ZFHX2Q9C0A1 2572 aaPredicted RBP14.67□□□□□ -0.06
SHMT2-230ENST00000557427 SPTBN4Q9H254 2564 aa14.67□□□□□ -0.06
SHMT2-230ENST00000557427 ASB14A6NK59 587 aa14.67□□□□□ -0.06
SHMT2-230ENST00000557427 GJB5O95377 273 aa14.67□□□□□ -0.06
SHMT2-230ENST00000557427 RASA1P20936 1047 aa14.67□□□□□ -0.06
SHMT2-230ENST00000557427 KCNJ6P48051 423 aa14.67□□□□□ -0.06
SHMT2-230ENST00000557427 RETREG2Q8NC44 543 aa14.67□□□□□ -0.06
SHMT2-230ENST00000557427 FAM227BQ96M60 508 aa14.67□□□□□ -0.06
SHMT2-230ENST00000557427 PURBQ96QR8 312 aaKnown RBP14.67□□□□□ -0.06
SHMT2-230ENST00000557427 CTAGE1Q96RT6 745 aa14.67□□□□□ -0.06
SHMT2-230ENST00000557427 C17orf80Q9BSJ5 609 aa14.67□□□□□ -0.06
SHMT2-230ENST00000557427 ZBED2Q9BTP6 218 aa14.67□□□□□ -0.06
SHMT2-230ENST00000557427 NAPBQ9H115 298 aa14.67□□□□□ -0.06
SHMT2-230ENST00000557427 PRKAG3Q9UGI9 489 aa14.67□□□□□ -0.06
SHMT2-230ENST00000557427 MUTYHQ9UIF7 546 aa14.67□□□□□ -0.06
SHMT2-230ENST00000557427 TRIP12Q14669 1992 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-230ENST00000557427 SCN10AQ9Y5Y9 1956 aa14.66□□□□□ -0.06
SHMT2-230ENST00000557427 OAZ1P54368 228 aa14.66□□□□□ -0.06
SHMT2-230ENST00000557427 PTPN5P54829 565 aa14.66□□□□□ -0.06
SHMT2-230ENST00000557427 COL19A1Q14993 1142 aa14.66□□□□□ -0.06
SHMT2-230ENST00000557427 ADHFE1Q8IWW8 467 aa14.66□□□□□ -0.06
SHMT2-230ENST00000557427 RAD9AQ99638 391 aa14.66□□□□□ -0.06
SHMT2-230ENST00000557427 HELLSQ9NRZ9 838 aa14.66□□□□□ -0.06
SHMT2-230ENST00000557427 MYO15AQ9UKN7 3530 aa14.66□□□□□ -0.06
SHMT2-230ENST00000557427 GFRA3O60609 400 aa14.65□□□□□ -0.06
SHMT2-230ENST00000557427 REC8O95072 547 aa14.65□□□□□ -0.06
SHMT2-230ENST00000557427 MYL3P08590 195 aa14.65□□□□□ -0.06
SHMT2-230ENST00000557427 CTDSPL2Q05D32 466 aa14.65□□□□□ -0.06
SHMT2-230ENST00000557427 NMIQ13287 307 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-230ENST00000557427 DUSP28Q4G0W2 176 aa14.65□□□□□ -0.06
SHMT2-230ENST00000557427 MCMDC2Q4G0Z9 681 aa14.65□□□□□ -0.06
SHMT2-230ENST00000557427 HERC4Q5GLZ8 1057 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-230ENST00000557427 FAM47CQ5HY64 1035 aa14.65□□□□□ -0.06
SHMT2-230ENST00000557427 VPS53Q5VIR6 699 aa14.65□□□□□ -0.06
SHMT2-230ENST00000557427 KIAA1211Q6ZU35 1233 aa14.65□□□□□ -0.06
SHMT2-230ENST00000557427 BMP8AQ7Z5Y6 402 aa14.65□□□□□ -0.06
SHMT2-230ENST00000557427 ACAD9Q9H845 621 aa14.65□□□□□ -0.06
SHMT2-230ENST00000557427 INCENPQ9NQS7 918 aa14.65□□□□□ -0.06
SHMT2-230ENST00000557427 FAM86C1Q9NVL1 165 aa14.65□□□□□ -0.06
SHMT2-230ENST00000557427 POLR3EQ9NVU0 708 aa14.65□□□□□ -0.06
SHMT2-230ENST00000557427 NYAP2Q9P242 653 aa14.65□□□□□ -0.06
SHMT2-230ENST00000557427 LCTP09848 1927 aa14.64□□□□□ -0.07
SHMT2-230ENST00000557427 DCHS1Q96JQ0 3298 aa14.64□□□□□ -0.07
SHMT2-230ENST00000557427 A0A0D9SFI3 127 aa14.64□□□□□ -0.07
SHMT2-230ENST00000557427 SLC3A2P08195 630 aaKnown RBP14.64□□□□□ -0.07
SHMT2-230ENST00000557427 PDE4BQ07343 736 aa14.64□□□□□ -0.07
SHMT2-230ENST00000557427 PPARAQ07869 468 aa14.64□□□□□ -0.07
SHMT2-230ENST00000557427 MORC4Q8TE76 937 aa14.64□□□□□ -0.07
SHMT2-230ENST00000557427 PABPC5Q96DU9 382 aaKnown RBP14.64□□□□□ -0.07
SHMT2-230ENST00000557427 MRPL38Q96DV4 380 aaKnown RBP14.64□□□□□ -0.07
SHMT2-230ENST00000557427 KIF2CQ99661 725 aa14.64□□□□□ -0.07
SHMT2-230ENST00000557427 MTG1Q9BT17 334 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-230ENST00000557427 USP26Q9BXU7 913 aa14.64□□□□□ -0.07
SHMT2-230ENST00000557427 ZNF287Q9HBT7 754 aa14.64□□□□□ -0.07
SHMT2-230ENST00000557427 RNF146Q9NTX7 359 aa14.64□□□□□ -0.07
SHMT2-230ENST00000557427 CLIP2Q9UDT6 1046 aa14.64□□□□□ -0.07
SHMT2-230ENST00000557427 CTDP1Q9Y5B0 961 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-230ENST00000557427 MYH7P12883 1935 aa14.63□□□□□ -0.07
SHMT2-230ENST00000557427 FOXP2O15409 715 aa14.63□□□□□ -0.07
SHMT2-230ENST00000557427 EPB41L2O43491 1005 aaKnown RBP14.63□□□□□ -0.07
SHMT2-230ENST00000557427 NBNO60934 754 aa14.63□□□□□ -0.07
SHMT2-230ENST00000557427 LTBRP36941 435 aa14.63□□□□□ -0.07
SHMT2-230ENST00000557427 BFSP2Q13515 415 aa14.63□□□□□ -0.07
SHMT2-230ENST00000557427 TCEAL5Q5H9L2 206 aa14.63□□□□□ -0.07
SHMT2-230ENST00000557427 FAM117BQ6P1L5 589 aa14.63□□□□□ -0.07
SHMT2-230ENST00000557427 NFRKBQ6P4R8 1299 aa14.63□□□□□ -0.07
SHMT2-230ENST00000557427 RNF135Q8IUD6 432 aa14.63□□□□□ -0.07
SHMT2-230ENST00000557427 HSCBQ8IWL3 235 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms