RNA–Protein interactions for RNA: ENST00000556994.5

SRP54-213, Transcript of signal recognition particle 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SRP54, Length 2,327 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-213ENST00000556994 EFCC1Q9HA90 598 aa12.66□□□□□ -0.38
SRP54-213ENST00000556994 MYH14Q7Z406 1995 aaKnown RBP12.65□□□□□ -0.38
SRP54-213ENST00000556994 SHOX2O60902 331 aaPredicted RBP12.65□□□□□ -0.38
SRP54-213ENST00000556994 TXKP42681 527 aa12.65□□□□□ -0.38
SRP54-213ENST00000556994 NAPAP54920 295 aa12.65□□□□□ -0.38
SRP54-213ENST00000556994 NAP1L1P55209 391 aaKnown RBP12.65□□□□□ -0.38
SRP54-213ENST00000556994 GNGT1P63211 74 aa12.65□□□□□ -0.38
SRP54-213ENST00000556994 RASSF7Q02833 373 aa12.65□□□□□ -0.38
SRP54-213ENST00000556994 SBK1Q52WX2 424 aa12.65□□□□□ -0.38
SRP54-213ENST00000556994 C12orf60Q5U649 245 aa12.65□□□□□ -0.38
SRP54-213ENST00000556994 SLC51AQ86UW1 340 aa12.65□□□□□ -0.38
SRP54-213ENST00000556994 BCAS4Q8TDM0 211 aa12.65□□□□□ -0.38
SRP54-213ENST00000556994 SIK3Q9Y2K2 1263 aa12.65□□□□□ -0.38
SRP54-213ENST00000556994 PRPHP41219 470 aa12.65□□□□□ -0.39
SRP54-213ENST00000556994 MAGEA1P43355 309 aa12.65□□□□□ -0.39
SRP54-213ENST00000556994 CDK17Q00537 523 aa12.65□□□□□ -0.39
SRP54-213ENST00000556994 LRRC41Q15345 812 aa12.65□□□□□ -0.39
SRP54-213ENST00000556994 FIGNQ5HY92 759 aa12.65□□□□□ -0.39
SRP54-213ENST00000556994 HAUS3Q68CZ6 603 aa12.65□□□□□ -0.39
SRP54-213ENST00000556994 KCTD16Q68DU8 428 aa12.65□□□□□ -0.39
SRP54-213ENST00000556994 DZIP1Q86YF9 867 aaKnown RBP12.65□□□□□ -0.39
SRP54-213ENST00000556994 GLIS3Q8NEA6 775 aa12.65□□□□□ -0.39
SRP54-213ENST00000556994 SH3RF3Q8TEJ3 882 aaPredicted RBP12.65□□□□□ -0.39
SRP54-213ENST00000556994 TMEM47Q9BQJ4 181 aa12.65□□□□□ -0.39
SRP54-213ENST00000556994 RBM12Q9NTZ6 932 aaKnown RBP12.65□□□□□ -0.39
SRP54-213ENST00000556994 BIN2Q9UBW5 565 aaPredicted RBP12.65□□□□□ -0.39
SRP54-213ENST00000556994 SAMM50Q9Y512 469 aa12.65□□□□□ -0.39
SRP54-213ENST00000556994 SMCO2A6NFE2 343 aa12.64□□□□□ -0.39
SRP54-213ENST00000556994 ZSCAN5CA6NGD5 496 aaPredicted RBP12.64□□□□□ -0.39
SRP54-213ENST00000556994 KLRF2D3W0D1 207 aa12.64□□□□□ -0.39
SRP54-213ENST00000556994 LIG3P49916 1009 aa12.64□□□□□ -0.39
SRP54-213ENST00000556994 PPFIA1Q13136 1202 aa12.64□□□□□ -0.39
SRP54-213ENST00000556994 TTMPQ5BVD1 217 aa12.64□□□□□ -0.39
SRP54-213ENST00000556994 CNNM4Q6P4Q7 775 aa12.64□□□□□ -0.39
SRP54-213ENST00000556994 POTEDQ86YR6 584 aa12.64□□□□□ -0.39
SRP54-213ENST00000556994 SH2D3CQ8N5H7 860 aa12.64□□□□□ -0.39
SRP54-213ENST00000556994 MTMR8Q96EF0 704 aa12.64□□□□□ -0.39
SRP54-213ENST00000556994 CUEDC2Q9H467 287 aa12.64□□□□□ -0.39
SRP54-213ENST00000556994 SAP30BPQ9UHR5 308 aaKnown RBP12.64□□□□□ -0.39
SRP54-213ENST00000556994 HYOU1Q9Y4L1 999 aa12.64□□□□□ -0.39
SRP54-213ENST00000556994 ESYT3A0FGR9 886 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 MYMKA6NI61 221 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 LAD1O00515 517 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 RNASE9P60153 205 aaKnown RBP12.63□□□□□ -0.39
SRP54-213ENST00000556994 NONOQ15233 471 aaKnown RBP eCLIP12.63□□□□□ -0.39
SRP54-213ENST00000556994 SF3B3Q15393 1217 aaKnown RBP12.63□□□□□ -0.39
SRP54-213ENST00000556994 DIXDC1Q155Q3 683 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 CENPPQ6IPU0 288 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 ZNF444Q8N0Y2 327 aaPredicted RBP12.63□□□□□ -0.39
SRP54-213ENST00000556994 DAGLBQ8NCG7 672 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 TBCKQ8TEA7 893 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 IPO4Q8TEX9 1081 aaKnown RBP12.63□□□□□ -0.39
SRP54-213ENST00000556994 ALS2CR12Q96Q35 445 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 TANGO6Q9C0B7 1094 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 NLRC4Q9NPP4 1024 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 TMEM260Q9NX78 707 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 STIM2Q9P246 746 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 GRIN2DO15399 1336 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 STRCQ7RTU9 1775 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 MYH1P12882 1939 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 KRT14P02533 472 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 HNRNPH3P31942 346 aaKnown RBP12.63□□□□□ -0.39
SRP54-213ENST00000556994 SLC1A4P43007 532 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 GNAQP50148 359 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 ATP1A2P50993 1020 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 AMPD3Q01432 767 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 TMED8Q6PL24 325 aaPredicted RBP12.63□□□□□ -0.39
SRP54-213ENST00000556994 USP17L2Q6R6M4 530 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 SV2BQ7L1I2 683 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 EFCAB13Q8IY85 973 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 TGFBRAP1Q8WUH2 860 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 CALML4Q96GE6 196 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 AK8Q96MA6 479 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 TLR10Q9BXR5 811 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 FAM169AQ9Y6X4 670 aa12.63□□□□□ -0.39
SRP54-213ENST00000556994 PALM3A6NDB9 673 aaPredicted RBP12.62□□□□□ -0.39
SRP54-213ENST00000556994 EBAG9O00559 213 aa12.62□□□□□ -0.39
SRP54-213ENST00000556994 FAM153BP0C7A2 387 aa12.62□□□□□ -0.39
SRP54-213ENST00000556994 TCP1P17987 556 aaKnown RBP12.62□□□□□ -0.39
SRP54-213ENST00000556994 PAFAH1B1P43034 410 aa12.62□□□□□ -0.39
SRP54-213ENST00000556994 EPHB4P54760 987 aa12.62□□□□□ -0.39
SRP54-213ENST00000556994 RPS8P62241 208 aaKnown RBP12.62□□□□□ -0.39
SRP54-213ENST00000556994 APBA1Q02410 837 aa12.62□□□□□ -0.39
SRP54-213ENST00000556994 GRB10Q13322 594 aa12.62□□□□□ -0.39
SRP54-213ENST00000556994 FAM153CQ494X1 144 aa12.62□□□□□ -0.39
SRP54-213ENST00000556994 TDRD12Q587J7 1177 aaKnown RBP12.62□□□□□ -0.39
SRP54-213ENST00000556994 KLHDC7AQ5VTJ3 777 aa12.62□□□□□ -0.39
SRP54-213ENST00000556994 C8orf74Q6P047 294 aa12.62□□□□□ -0.39
SRP54-213ENST00000556994 CACNA2D4Q7Z3S7 1137 aa12.62□□□□□ -0.39
SRP54-213ENST00000556994 NEK8Q86SG6 692 aa12.62□□□□□ -0.39
SRP54-213ENST00000556994 TADA2BQ86TJ2 420 aa12.62□□□□□ -0.39
SRP54-213ENST00000556994 IFT81Q8WYA0 676 aa12.62□□□□□ -0.39
SRP54-213ENST00000556994 ZIM3Q96PE6 472 aa12.62□□□□□ -0.39
SRP54-213ENST00000556994 RUFY1Q96T51 708 aa12.62□□□□□ -0.39
SRP54-213ENST00000556994 ZMYND12Q9H0C1 365 aa12.62□□□□□ -0.39
SRP54-213ENST00000556994 BLOC1S4Q9NUP1 217 aa12.62□□□□□ -0.39
SRP54-213ENST00000556994 FAM153AQ9UHL3 310 aa12.62□□□□□ -0.39
SRP54-213ENST00000556994 ZNF652Q9Y2D9 606 aa12.62□□□□□ -0.39
SRP54-213ENST00000556994 GOLGA8KD6RF30 607 aa12.62□□□□□ -0.39
SRP54-213ENST00000556994 EIF3HO15372 352 aaKnown RBP eCLIP12.62□□□□□ -0.394e-6■■■■■ 29.2
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms