RNA–Protein interactions for RNA: ENST00000556461.1

VTI1B-206, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 576 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-206ENST00000556461 DUSP28Q4G0W2 176 aa9.4□□□□□ -0.9
VTI1B-206ENST00000556461 TMTC3Q6ZXV5 915 aa9.4□□□□□ -0.9
VTI1B-206ENST00000556461 SGMS1Q86VZ5 419 aa9.4□□□□□ -0.9
VTI1B-206ENST00000556461 MICU3Q86XE3 530 aa9.4□□□□□ -0.9
VTI1B-206ENST00000556461 CCDC82Q8N4S0 544 aa9.4□□□□□ -0.9
VTI1B-206ENST00000556461 IL31RAQ8NI17 732 aa9.4□□□□□ -0.9
VTI1B-206ENST00000556461 CTCFLQ8NI51 663 aaPredicted RBP9.4□□□□□ -0.9
VTI1B-206ENST00000556461 NSUN6Q8TEA1 469 aaKnown RBP9.4□□□□□ -0.9
VTI1B-206ENST00000556461 ZFP91Q96JP5 570 aaPredicted RBP9.4□□□□□ -0.9
VTI1B-206ENST00000556461 JAKMIP1Q96N16 626 aaKnown RBP9.4□□□□□ -0.9
VTI1B-206ENST00000556461 SPZ1Q9BXG8 430 aa9.4□□□□□ -0.9
VTI1B-206ENST00000556461 AP5M1Q9H0R1 490 aa9.4□□□□□ -0.9
VTI1B-206ENST00000556461 SPC25Q9HBM1 224 aa9.4□□□□□ -0.9
VTI1B-206ENST00000556461 PRDM5Q9NQX1 630 aaPredicted RBP9.4□□□□□ -0.9
VTI1B-206ENST00000556461 PXMP2Q9NR77 195 aa9.4□□□□□ -0.9
VTI1B-206ENST00000556461 SLC12A7Q9Y666 1083 aa9.4□□□□□ -0.9
VTI1B-206ENST00000556461 SOX1O00570 391 aaPredicted RBP9.39□□□□□ -0.91
VTI1B-206ENST00000556461 SLC34A2O95436 690 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 KIF5BP33176 963 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 BMP8BP34820 402 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 CDK7P50613 346 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 PSMC6P62333 389 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 FAAP100Q0VG06 881 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 LY6KQ17RY6 165 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 ARHGEF16Q5VV41 709 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 ERICH6BQ5W0A0 696 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 CCDC62Q6P9F0 684 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 APOA5Q6Q788 366 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 SEPT14Q6ZU15 432 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 FCHSD1Q86WN1 690 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 TMTC2Q8N394 836 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 FANCBQ8NB91 859 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 PCSK9Q8NBP7 692 aaKnown RBP9.39□□□□□ -0.91
VTI1B-206ENST00000556461 OR6J1Q8NGC5 347 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 PPP1R13LQ8WUF5 828 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 VTI1AQ96AJ9 217 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 GLT1D1Q96MS3 346 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 PDCD2LQ9BRP1 358 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 MAF1Q9H063 256 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 FAM217BQ9NTX9 383 aaPredicted RBP9.39□□□□□ -0.91
VTI1B-206ENST00000556461 Q9Y3F1 56 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 MYH6P13533 1939 aa9.39□□□□□ -0.91
VTI1B-206ENST00000556461 ELP1O95163 1332 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 CNTNAP5Q8WYK1 1306 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 KLF18A0A0U1RQI7 1052 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 GCOM1H8Y6P7 765 aaPredicted RBP9.38□□□□□ -0.91
VTI1B-206ENST00000556461 ARVCFO00192 962 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 RGS20O76081 388 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 NR3C2P08235 984 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 CLTBP09497 229 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 POLR2MP0CAP2 368 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 CALM1P0DP23 149 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 CALM2P0DP24 149 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 CALM3P0DP25 149 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 TXNP10599 105 aaKnown RBP9.38□□□□□ -0.91
VTI1B-206ENST00000556461 MYCLP12524 364 aaPredicted RBP9.38□□□□□ -0.91
VTI1B-206ENST00000556461 SMARCA1P28370 1054 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 CDC27P30260 824 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 GNAQP50148 359 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 APOBRQ0VD83 1088 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 FUT2Q10981 343 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 KRT32Q14532 448 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 PPP2R5BQ15173 497 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 STXBP2Q15833 593 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 USP17L6PQ6QN14 398 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 Q6ZUG5 572 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 ANKRD33Q7Z3H0 272 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 SCFD2Q8WU76 684 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 GPKOWQ92917 476 aaPredicted RBP eCLIP9.38□□□□□ -0.91
VTI1B-206ENST00000556461 BADQ92934 168 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 RRP36Q96EU6 259 aaKnown RBP9.38□□□□□ -0.91
VTI1B-206ENST00000556461 IWS1Q96ST2 819 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 LZTS2Q9BRK4 669 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 USP26Q9BXU7 913 aa9.38□□□□□ -0.91
VTI1B-206ENST00000556461 UBE2OQ9C0C9 1292 aaKnown RBP9.38□□□□□ -0.91
VTI1B-206ENST00000556461 A0A0U1RQG5 324 aaPredicted RBP9.37□□□□□ -0.91
VTI1B-206ENST00000556461 RBAK-RBAKDNI3L0D1 243 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 MEIS2O14770 477 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 KIAA0355O15063 1070 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 ZBTB43O43298 467 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 SORBS3O60504 671 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 EIF3JO75822 258 aaKnown RBP9.37□□□□□ -0.91
VTI1B-206ENST00000556461 REC8O95072 547 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 MYL3P08590 195 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 RPS6KB1P23443 525 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 EPHB4P54760 987 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 ARHGAP1Q07960 439 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 TTLL4Q14679 1199 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 PGM5Q15124 567 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 RTN1Q16799 776 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 TYW1BQ6NUM6 668 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 VSIG10LQ86VR7 867 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 FAM126BQ8IXS8 530 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 SLC43A3Q8NBI5 491 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 AFG1LQ8WV93 481 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 BRF1Q92994 677 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 LRCH3Q96II8 777 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 TOX2Q96NM4 488 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 MPHOSPH6Q99547 160 aaKnown RBP9.37□□□□□ -0.91
VTI1B-206ENST00000556461 LBHD1Q9BQE6 289 aaPredicted RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms