RNA–Protein interactions for RNA: ENST00000556310.1

SLIRP-205, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-205ENST00000556310 EDNRBP24530 442 aa13.37□□□□□ -0.27
SLIRP-205ENST00000556310 APOA5Q6Q788 366 aa13.37□□□□□ -0.27
SLIRP-205ENST00000556310 MICU3Q86XE3 530 aa13.37□□□□□ -0.27
SLIRP-205ENST00000556310 FBXO16Q8IX29 292 aaPredicted RBP13.37□□□□□ -0.27
SLIRP-205ENST00000556310 PDCD7Q8N8D1 485 aaKnown RBP13.37□□□□□ -0.27
SLIRP-205ENST00000556310 TCEANC2Q96MN5 208 aa13.37□□□□□ -0.27
SLIRP-205ENST00000556310 JAKMIP1Q96N16 626 aaKnown RBP13.37□□□□□ -0.27
SLIRP-205ENST00000556310 UPF3AQ9H1J1 476 aaKnown RBP13.37□□□□□ -0.27
SLIRP-205ENST00000556310 PCDHA1Q9Y5I3 950 aa13.37□□□□□ -0.27
SLIRP-205ENST00000556310 DDX49Q9Y6V7 483 aaKnown RBP13.37□□□□□ -0.27
SLIRP-205ENST00000556310 B4DLN1 442 aa13.36□□□□□ -0.27
SLIRP-205ENST00000556310 H0YGN5 161 aa13.36□□□□□ -0.27
SLIRP-205ENST00000556310 PLEKHA8P1O95397 391 aa13.36□□□□□ -0.27
SLIRP-205ENST00000556310 RXRAP19793 462 aa13.36□□□□□ -0.27
SLIRP-205ENST00000556310 CST5P28325 142 aaPredicted RBP13.36□□□□□ -0.27
SLIRP-205ENST00000556310 HSD17B4P51659 736 aa13.36□□□□□ -0.27
SLIRP-205ENST00000556310 MRPL12P52815 198 aaKnown RBP13.36□□□□□ -0.27
SLIRP-205ENST00000556310 LRRC26Q2I0M4 334 aa13.36□□□□□ -0.27
SLIRP-205ENST00000556310 TAPT1Q6NXT6 567 aa13.36□□□□□ -0.27
SLIRP-205ENST00000556310 SYNE3Q6ZMZ3 975 aa13.36□□□□□ -0.27
SLIRP-205ENST00000556310 C7orf61Q8IZ16 206 aa13.36□□□□□ -0.27
SLIRP-205ENST00000556310 SAMD3Q8N6K7 520 aa13.36□□□□□ -0.27
SLIRP-205ENST00000556310 SYTL5Q8TDW5 730 aaPredicted RBP13.36□□□□□ -0.27
SLIRP-205ENST00000556310 SLC39A7Q92504 469 aa13.36□□□□□ -0.27
SLIRP-205ENST00000556310 RRP36Q96EU6 259 aaKnown RBP13.36□□□□□ -0.27
SLIRP-205ENST00000556310 SENP6Q9GZR1 1112 aaPredicted RBP13.36□□□□□ -0.27
SLIRP-205ENST00000556310 SPC25Q9HBM1 224 aa13.36□□□□□ -0.27
SLIRP-205ENST00000556310 PHF24Q9UPV7 400 aa13.36□□□□□ -0.27
SLIRP-205ENST00000556310 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.35□□□□□ -0.27
SLIRP-205ENST00000556310 CFBP00751 764 aa13.35□□□□□ -0.27
SLIRP-205ENST00000556310 ADCYAP1R1P41586 468 aa13.35□□□□□ -0.27
SLIRP-205ENST00000556310 RCAN1P53805 252 aa13.35□□□□□ -0.27
SLIRP-205ENST00000556310 GJA9P57773 515 aa13.35□□□□□ -0.27
SLIRP-205ENST00000556310 TNFAIP2Q03169 654 aa13.35□□□□□ -0.27
SLIRP-205ENST00000556310 PDE4DQ08499 809 aa13.35□□□□□ -0.27
SLIRP-205ENST00000556310 BLOC1S2Q6QNY1 142 aa13.35□□□□□ -0.27
SLIRP-205ENST00000556310 TMTC3Q6ZXV5 915 aa13.35□□□□□ -0.27
SLIRP-205ENST00000556310 EEPD1Q7L9B9 569 aa13.35□□□□□ -0.27
SLIRP-205ENST00000556310 RAB11FIP4Q86YS3 637 aa13.35□□□□□ -0.27
SLIRP-205ENST00000556310 SRBD1Q8N5C6 995 aaKnown RBP13.35□□□□□ -0.27
SLIRP-205ENST00000556310 FANCBQ8NB91 859 aa13.35□□□□□ -0.27
SLIRP-205ENST00000556310 KLHDC9Q8NEP7 349 aa13.35□□□□□ -0.27
SLIRP-205ENST00000556310 TBC1D5Q92609 795 aa13.35□□□□□ -0.27
SLIRP-205ENST00000556310 TSEN34Q9BSV6 310 aaKnown RBP13.35□□□□□ -0.27
SLIRP-205ENST00000556310 MAP3K20Q9NYL2 800 aaKnown RBP13.35□□□□□ -0.27
SLIRP-205ENST00000556310 COL20A1Q9P218 1284 aa13.35□□□□□ -0.27
SLIRP-205ENST00000556310 SEC63Q9UGP8 760 aaKnown RBP13.35□□□□□ -0.27
SLIRP-205ENST00000556310 RBM47A0AV96 593 aaKnown RBP13.34□□□□□ -0.27
SLIRP-205ENST00000556310 MYADML2A6NDP7 307 aa13.34□□□□□ -0.27
SLIRP-205ENST00000556310 MOXD2PA6NHM9 499 aa13.34□□□□□ -0.27
SLIRP-205ENST00000556310 ZBTB43O43298 467 aa13.34□□□□□ -0.27
SLIRP-205ENST00000556310 C6orf222P0C671 652 aaPredicted RBP13.34□□□□□ -0.27
SLIRP-205ENST00000556310 CPA1P15085 419 aa13.34□□□□□ -0.27
SLIRP-205ENST00000556310 RPS6KB1P23443 525 aa13.34□□□□□ -0.27
SLIRP-205ENST00000556310 PSMA5P28066 241 aa13.34□□□□□ -0.27
SLIRP-205ENST00000556310 NKX3-2P78367 333 aa13.34□□□□□ -0.27
SLIRP-205ENST00000556310 FGD1P98174 961 aa13.34□□□□□ -0.27
SLIRP-205ENST00000556310 SNX17Q15036 470 aa13.34□□□□□ -0.27
SLIRP-205ENST00000556310 IQSEC1Q6DN90 963 aa13.34□□□□□ -0.27
SLIRP-205ENST00000556310 TLK2Q86UE8 772 aa13.34□□□□□ -0.27
SLIRP-205ENST00000556310 NSUN6Q8TEA1 469 aaKnown RBP13.34□□□□□ -0.27
SLIRP-205ENST00000556310 TAAR1Q96RJ0 339 aa13.34□□□□□ -0.27
SLIRP-205ENST00000556310 RMDN3Q96TC7 470 aa13.34□□□□□ -0.27
SLIRP-205ENST00000556310 USP26Q9BXU7 913 aa13.34□□□□□ -0.27
SLIRP-205ENST00000556310 PDGFCQ9NRA1 345 aa13.34□□□□□ -0.27
SLIRP-205ENST00000556310 RBM28Q9NW13 759 aaKnown RBP13.34□□□□□ -0.27
SLIRP-205ENST00000556310 BRPF3Q9ULD4 1205 aa13.34□□□□□ -0.27
SLIRP-205ENST00000556310 GNEQ9Y223 722 aaKnown RBP13.34□□□□□ -0.27
SLIRP-205ENST00000556310 LTBP2Q14767 1821 aa13.34□□□□□ -0.27
SLIRP-205ENST00000556310 NID2Q14112 1375 aa13.33□□□□□ -0.27
SLIRP-205ENST00000556310 RANBP2P49792 3224 aaKnown RBP13.33□□□□□ -0.28
SLIRP-205ENST00000556310 KLF18A0A0U1RQI7 1052 aa13.33□□□□□ -0.28
SLIRP-205ENST00000556310 A0A1W2PQ45 241 aaPredicted RBP13.33□□□□□ -0.28
SLIRP-205ENST00000556310 A0A1W2PQY0 241 aa13.33□□□□□ -0.28
SLIRP-205ENST00000556310 SMPD1P17405 629 aa13.33□□□□□ -0.28
SLIRP-205ENST00000556310 CASTP20810 708 aaKnown RBP13.33□□□□□ -0.28
SLIRP-205ENST00000556310 ACLYP53396 1101 aa13.33□□□□□ -0.28
SLIRP-205ENST00000556310 RTN1Q16799 776 aa13.33□□□□□ -0.28
SLIRP-205ENST00000556310 DUSP28Q4G0W2 176 aa13.33□□□□□ -0.28
SLIRP-205ENST00000556310 C1orf53Q5VUE5 145 aa13.33□□□□□ -0.28
SLIRP-205ENST00000556310 CCSAPQ6IQ19 270 aaPredicted RBP13.33□□□□□ -0.28
SLIRP-205ENST00000556310 SLC39A5Q6ZMH5 540 aa13.33□□□□□ -0.28
SLIRP-205ENST00000556310 NOL8Q76FK4 1167 aaKnown RBP13.33□□□□□ -0.28
SLIRP-205ENST00000556310 FBXL16Q8N461 479 aa13.33□□□□□ -0.28
SLIRP-205ENST00000556310 PCSK9Q8NBP7 692 aaKnown RBP13.33□□□□□ -0.28
SLIRP-205ENST00000556310 PIBF1Q8WXW3 757 aa13.33□□□□□ -0.28
SLIRP-205ENST00000556310 IWS1Q96ST2 819 aa13.33□□□□□ -0.28
SLIRP-205ENST00000556310 AGXT2Q9BYV1 514 aa13.33□□□□□ -0.28
SLIRP-205ENST00000556310 PXMP2Q9NR77 195 aa13.33□□□□□ -0.28
SLIRP-205ENST00000556310 Q9Y3F1 56 aa13.33□□□□□ -0.28
SLIRP-205ENST00000556310 CNTNAP5Q8WYK1 1306 aa13.33□□□□□ -0.28
SLIRP-205ENST00000556310 TRIOBPQ9H2D6 2365 aa13.32□□□□□ -0.28
SLIRP-205ENST00000556310 GOLGA8AA7E2F4 631 aa13.32□□□□□ -0.28
SLIRP-205ENST00000556310 GOLGA8BA8MQT2 603 aa13.32□□□□□ -0.28
SLIRP-205ENST00000556310 GCOM1H8Y6P7 765 aaPredicted RBP13.32□□□□□ -0.28
SLIRP-205ENST00000556310 CTAGE5O15320 804 aa13.32□□□□□ -0.28
SLIRP-205ENST00000556310 POLR2MP0CAP2 368 aa13.32□□□□□ -0.28
SLIRP-205ENST00000556310 EIF2AK2P19525 551 aaKnown RBP13.32□□□□□ -0.28
SLIRP-205ENST00000556310 RTP1P59025 263 aa13.32□□□□□ -0.28
SLIRP-205ENST00000556310 PPP2R5BQ15173 497 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms