RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 CCPG1Q9ULG6 757 aa13.37□□□□□ -0.27
VPS33B-204ENST00000554660 PATL2C9JE40 543 aaKnown RBP13.36□□□□□ -0.27
VPS33B-204ENST00000554660 MYL3P08590 195 aa13.36□□□□□ -0.27
VPS33B-204ENST00000554660 PDE1AP54750 535 aa13.36□□□□□ -0.27
VPS33B-204ENST00000554660 PURAQ00577 322 aaKnown RBP13.36□□□□□ -0.27
VPS33B-204ENST00000554660 KLHL40Q2TBA0 621 aa13.36□□□□□ -0.27
VPS33B-204ENST00000554660 FAM47CQ5HY64 1035 aa13.36□□□□□ -0.27
VPS33B-204ENST00000554660 TMEM67Q5HYA8 995 aa13.36□□□□□ -0.27
VPS33B-204ENST00000554660 GPATCH3Q96I76 525 aa13.36□□□□□ -0.27
VPS33B-204ENST00000554660 SEZ6LQ9BYH1 1024 aa13.36□□□□□ -0.27
VPS33B-204ENST00000554660 NACAP1Q9BZK3 213 aa13.36□□□□□ -0.27
VPS33B-204ENST00000554660 Q9Y3F1 56 aa13.36□□□□□ -0.27
VPS33B-204ENST00000554660 MTCH2Q9Y6C9 303 aa13.36□□□□□ -0.27
VPS33B-204ENST00000554660 TSPY2A6NKD2 308 aa13.35□□□□□ -0.27
VPS33B-204ENST00000554660 NFIBO00712 420 aa13.35□□□□□ -0.27
VPS33B-204ENST00000554660 PFKMP08237 780 aa13.35□□□□□ -0.27
VPS33B-204ENST00000554660 ALDH5A1P51649 535 aaPredicted RBP13.35□□□□□ -0.27
VPS33B-204ENST00000554660 AAK1Q2M2I8 961 aa13.35□□□□□ -0.27
VPS33B-204ENST00000554660 CCDC96Q2M329 555 aa13.35□□□□□ -0.27
VPS33B-204ENST00000554660 DUSP28Q4G0W2 176 aa13.35□□□□□ -0.27
VPS33B-204ENST00000554660 SLC30A10Q6XR72 485 aa13.35□□□□□ -0.27
VPS33B-204ENST00000554660 SPRED2Q7Z698 418 aa13.35□□□□□ -0.27
VPS33B-204ENST00000554660 MORC4Q8TE76 937 aa13.35□□□□□ -0.27
VPS33B-204ENST00000554660 ARNTL2Q8WYA1 636 aa13.35□□□□□ -0.27
VPS33B-204ENST00000554660 INCENPQ9NQS7 918 aa13.35□□□□□ -0.27
VPS33B-204ENST00000554660 IL17RBQ9NRM6 502 aa13.35□□□□□ -0.27
VPS33B-204ENST00000554660 FOXP2O15409 715 aa13.34□□□□□ -0.27
VPS33B-204ENST00000554660 GTPBP6O43824 516 aaPredicted RBP13.34□□□□□ -0.27
VPS33B-204ENST00000554660 ICAM1P05362 532 aa13.34□□□□□ -0.27
VPS33B-204ENST00000554660 SLC3A2P08195 630 aaKnown RBP13.34□□□□□ -0.27
VPS33B-204ENST00000554660 SUPT20HL2P0C7V6 817 aa13.34□□□□□ -0.27
VPS33B-204ENST00000554660 SLC16A2P36021 539 aa13.34□□□□□ -0.27
VPS33B-204ENST00000554660 CTDSPL2Q05D32 466 aa13.34□□□□□ -0.27
VPS33B-204ENST00000554660 BAATQ14032 418 aaPredicted RBP13.34□□□□□ -0.27
VPS33B-204ENST00000554660 RCSD1Q6JBY9 416 aa13.34□□□□□ -0.27
VPS33B-204ENST00000554660 OR6J1Q8NGC5 347 aa13.34□□□□□ -0.27
VPS33B-204ENST00000554660 C1QTNF1Q9BXJ1 281 aa13.34□□□□□ -0.27
VPS33B-204ENST00000554660 WDR11Q9BZH6 1224 aa13.34□□□□□ -0.27
VPS33B-204ENST00000554660 GRPEL1Q9HAV7 217 aa13.34□□□□□ -0.27
VPS33B-204ENST00000554660 POLR3EQ9NVU0 708 aa13.34□□□□□ -0.27
VPS33B-204ENST00000554660 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.34□□□□□ -0.27
VPS33B-204ENST00000554660 RBAK-RBAKDNI3L0D1 243 aa13.33□□□□□ -0.28
VPS33B-204ENST00000554660 PLA2G6O60733 806 aa13.33□□□□□ -0.28
VPS33B-204ENST00000554660 CD2BP2O95400 341 aaKnown RBP13.33□□□□□ -0.28
VPS33B-204ENST00000554660 CPT1AP50416 773 aa13.33□□□□□ -0.28
VPS33B-204ENST00000554660 TTBK2Q6IQ55 1244 aa13.33□□□□□ -0.28
VPS33B-204ENST00000554660 SPRYD3Q8NCJ5 442 aa13.33□□□□□ -0.28
VPS33B-204ENST00000554660 SLC9A7Q96T83 725 aa13.33□□□□□ -0.28
VPS33B-204ENST00000554660 MTG1Q9BT17 334 aaPredicted RBP13.33□□□□□ -0.28
VPS33B-204ENST00000554660 FSD1Q9BTV5 496 aa13.33□□□□□ -0.28
VPS33B-204ENST00000554660 RANBP17Q9H2T7 1088 aaKnown RBP13.33□□□□□ -0.28
VPS33B-204ENST00000554660 PRRC2BQ5JSZ5 2229 aaKnown RBP13.33□□□□□ -0.28
VPS33B-204ENST00000554660 FRMPD2Q68DX3 1309 aaPredicted RBP13.33□□□□□ -0.28
VPS33B-204ENST00000554660 NCOR1O75376 2440 aa13.32□□□□□ -0.28
VPS33B-204ENST00000554660 PTPDC1A2A3K4 754 aa13.32□□□□□ -0.28
VPS33B-204ENST00000554660 ACTN1P12814 892 aa13.32□□□□□ -0.28
VPS33B-204ENST00000554660 TAP1Q03518 808 aa13.32□□□□□ -0.28
VPS33B-204ENST00000554660 PPP2R5BQ15173 497 aa13.32□□□□□ -0.28
VPS33B-204ENST00000554660 NBPF20Q3BBV1 942 aa13.32□□□□□ -0.28
VPS33B-204ENST00000554660 HERC6Q8IVU3 1022 aa13.32□□□□□ -0.28
VPS33B-204ENST00000554660 OTUD7AQ8TE49 926 aaPredicted RBP13.32□□□□□ -0.28
VPS33B-204ENST00000554660 COPS5Q92905 334 aa13.32□□□□□ -0.28
VPS33B-204ENST00000554660 INTS4Q96HW7 963 aaKnown RBP13.32□□□□□ -0.28
VPS33B-204ENST00000554660 FTOQ9C0B1 505 aaKnown RBP eCLIP13.32□□□□□ -0.28
VPS33B-204ENST00000554660 EPHX3Q9H6B9 360 aa13.32□□□□□ -0.28
VPS33B-204ENST00000554660 GPHNQ9NQX3 736 aaPredicted RBP13.32□□□□□ -0.28
VPS33B-204ENST00000554660 ADD3Q9UEY8 706 aaKnown RBP13.32□□□□□ -0.28
VPS33B-204ENST00000554660 PTPRSQ13332 1948 aa13.32□□□□□ -0.28
VPS33B-204ENST00000554660 SCN10AQ9Y5Y9 1956 aa13.32□□□□□ -0.28
VPS33B-204ENST00000554660 RANBP6O60518 1105 aaKnown RBP13.31□□□□□ -0.28
VPS33B-204ENST00000554660 BAG4O95429 457 aaKnown RBP13.31□□□□□ -0.28
VPS33B-204ENST00000554660 IQCF3P0C7M6 154 aa13.31□□□□□ -0.28
VPS33B-204ENST00000554660 POU3F3P20264 500 aaPredicted RBP13.31□□□□□ -0.28
VPS33B-204ENST00000554660 CALML3P27482 149 aa13.31□□□□□ -0.28
VPS33B-204ENST00000554660 RFC2P35250 354 aa13.31□□□□□ -0.28
VPS33B-204ENST00000554660 CHMP4BP1P59074 171 aa13.31□□□□□ -0.28
VPS33B-204ENST00000554660 ZNF445P59923 1031 aa13.31□□□□□ -0.28
VPS33B-204ENST00000554660 GRB10Q13322 594 aa13.31□□□□□ -0.28
VPS33B-204ENST00000554660 LRRFIP1Q32MZ4 808 aaKnown RBP13.31□□□□□ -0.28
VPS33B-204ENST00000554660 PPP4R3BQ5MIZ7 849 aa13.31□□□□□ -0.28
VPS33B-204ENST00000554660 ZMYM1Q5SVZ6 1142 aa13.31□□□□□ -0.28
VPS33B-204ENST00000554660 SYDE2Q5VT97 1194 aa13.31□□□□□ -0.28
VPS33B-204ENST00000554660 TMCO2Q7Z6W1 182 aaPredicted RBP13.31□□□□□ -0.28
VPS33B-204ENST00000554660 PI4K2BQ8TCG2 481 aa13.31□□□□□ -0.28
VPS33B-204ENST00000554660 DCAF4Q8WV16 495 aa13.31□□□□□ -0.28
VPS33B-204ENST00000554660 KHSRPQ92945 711 aaKnown RBP eCLIP13.31□□□□□ -0.28
VPS33B-204ENST00000554660 RBM47A0AV96 593 aaKnown RBP13.3□□□□□ -0.28
VPS33B-204ENST00000554660 LCHNA4D1U4 455 aa13.3□□□□□ -0.28
VPS33B-204ENST00000554660 PITPNM1O00562 1244 aa13.3□□□□□ -0.28
VPS33B-204ENST00000554660 MX1P20591 662 aa13.3□□□□□ -0.28
VPS33B-204ENST00000554660 CLCN1P35523 988 aa13.3□□□□□ -0.28
VPS33B-204ENST00000554660 VPS53Q5VIR6 699 aa13.3□□□□□ -0.28
VPS33B-204ENST00000554660 RETREG2Q8NC44 543 aa13.3□□□□□ -0.28
VPS33B-204ENST00000554660 GDPD5Q8WTR4 605 aa13.3□□□□□ -0.28
VPS33B-204ENST00000554660 CLEC4DQ8WXI8 215 aa13.3□□□□□ -0.28
VPS33B-204ENST00000554660 ESYT1Q9BSJ8 1104 aa13.3□□□□□ -0.28
VPS33B-204ENST00000554660 LRFN3Q9BTN0 628 aa13.3□□□□□ -0.28
VPS33B-204ENST00000554660 GPCPD1Q9NPB8 672 aa13.3□□□□□ -0.28
VPS33B-204ENST00000554660 COG5Q9UP83 839 aa13.3□□□□□ -0.28
VPS33B-204ENST00000554660 NOD1Q9Y239 953 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms