RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 FAM47CQ5HY64 1035 aa13.92□□□□□ -0.18
SRP54-203ENST00000553544 NFRKBQ6P4R8 1299 aa13.92□□□□□ -0.18
SRP54-203ENST00000553544 ZNF589Q86UQ0 364 aaPredicted RBP13.92□□□□□ -0.18
SRP54-203ENST00000553544 RILPL2Q969X0 211 aa13.92□□□□□ -0.18
SRP54-203ENST00000553544 LMCD1Q9NZU5 365 aa13.92□□□□□ -0.18
SRP54-203ENST00000553544 CCPG1Q9ULG6 757 aa13.92□□□□□ -0.18
SRP54-203ENST00000553544 PRR12Q9ULL5 1215 aa13.92□□□□□ -0.18
SRP54-203ENST00000553544 PIEZO1Q92508 2521 aa13.92□□□□□ -0.18
SRP54-203ENST00000553544 LOC102724159A0A0B4J2E5 919 aa13.91□□□□□ -0.18
SRP54-203ENST00000553544 HSPD1P10809 573 aaKnown RBP13.91□□□□□ -0.18
SRP54-203ENST00000553544 IRX6P78412 446 aaPredicted RBP13.91□□□□□ -0.18
SRP54-203ENST00000553544 CTDSPL2Q05D32 466 aa13.91□□□□□ -0.18
SRP54-203ENST00000553544 GRB10Q13322 594 aa13.91□□□□□ -0.18
SRP54-203ENST00000553544 BAATQ14032 418 aaPredicted RBP13.91□□□□□ -0.18
SRP54-203ENST00000553544 PWP2Q15269 919 aaKnown RBP13.91□□□□□ -0.18
SRP54-203ENST00000553544 KCTD1Q719H9 257 aa13.91□□□□□ -0.18
SRP54-203ENST00000553544 OR6J1Q8NGC5 347 aa13.91□□□□□ -0.18
SRP54-203ENST00000553544 PURBQ96QR8 312 aaKnown RBP13.91□□□□□ -0.18
SRP54-203ENST00000553544 INCENPQ9NQS7 918 aa13.91□□□□□ -0.18
SRP54-203ENST00000553544 STX8Q9UNK0 236 aa13.91□□□□□ -0.18
SRP54-203ENST00000553544 ZMYM6O95789 1325 aa13.9□□□□□ -0.18
SRP54-203ENST00000553544 RBM47A0AV96 593 aaKnown RBP13.9□□□□□ -0.18
SRP54-203ENST00000553544 PI4K2BG5E9Z4 385 aa13.9□□□□□ -0.18
SRP54-203ENST00000553544 BAIAP3O94812 1187 aa13.9□□□□□ -0.18
SRP54-203ENST00000553544 ICAM1P05362 532 aa13.9□□□□□ -0.18
SRP54-203ENST00000553544 PDE4AP27815 886 aa13.9□□□□□ -0.18
SRP54-203ENST00000553544 KCNJ6P48051 423 aa13.9□□□□□ -0.18
SRP54-203ENST00000553544 NOVP48745 357 aa13.9□□□□□ -0.18
SRP54-203ENST00000553544 PTPN11Q06124 597 aaPredicted RBP13.9□□□□□ -0.18
SRP54-203ENST00000553544 MPHOSPH6Q99547 160 aaKnown RBP13.9□□□□□ -0.18
SRP54-203ENST00000553544 ZBED2Q9BTP6 218 aa13.9□□□□□ -0.18
SRP54-203ENST00000553544 IL17RBQ9NRM6 502 aa13.9□□□□□ -0.18
SRP54-203ENST00000553544 NOD1Q9Y239 953 aa13.9□□□□□ -0.18
SRP54-203ENST00000553544 CCDC171Q6TFL3 1326 aa13.9□□□□□ -0.19
SRP54-203ENST00000553544 RAD50Q92878 1312 aa13.9□□□□□ -0.19
SRP54-203ENST00000553544 NKRFO15226 690 aaKnown RBP eCLIP13.89□□□□□ -0.19
SRP54-203ENST00000553544 ORC4O43929 436 aa13.89□□□□□ -0.19
SRP54-203ENST00000553544 ALDH5A1P51649 535 aaPredicted RBP13.89□□□□□ -0.19
SRP54-203ENST00000553544 A6NJR5 290 aa13.88□□□□□ -0.19
SRP54-203ENST00000553544 LPXNO60711 386 aa13.88□□□□□ -0.19
SRP54-203ENST00000553544 ARHGEF15O94989 841 aa13.88□□□□□ -0.19
SRP54-203ENST00000553544 KHSRPQ92945 711 aaKnown RBP eCLIP13.88□□□□□ -0.192e-7■□□□□ 9.6
SRP54-203ENST00000553544 C11orf16Q9NQ32 467 aa13.88□□□□□ -0.19
SRP54-203ENST00000553544 GBF1Q92538 1859 aa13.88□□□□□ -0.19
SRP54-203ENST00000553544 PTPDC1A2A3K4 754 aa13.87□□□□□ -0.19
SRP54-203ENST00000553544 FAM86C2PA6NEL3 165 aa13.87□□□□□ -0.19
SRP54-203ENST00000553544 TSPY2A6NKD2 308 aa13.87□□□□□ -0.19
SRP54-203ENST00000553544 B4DLN1 442 aa13.87□□□□□ -0.19
SRP54-203ENST00000553544 HIP1O00291 1037 aa13.87□□□□□ -0.19
SRP54-203ENST00000553544 MRPL12P52815 198 aaKnown RBP13.87□□□□□ -0.19
SRP54-203ENST00000553544 MFAP1P55081 439 aaKnown RBP13.87□□□□□ -0.19
SRP54-203ENST00000553544 CHMP4BP1P59074 171 aa13.87□□□□□ -0.19
SRP54-203ENST00000553544 PDE4DQ08499 809 aa13.87□□□□□ -0.19
SRP54-203ENST00000553544 PPP2R5BQ15173 497 aa13.87□□□□□ -0.19
SRP54-203ENST00000553544 PTGISQ16647 500 aa13.87□□□□□ -0.19
SRP54-203ENST00000553544 CWC27Q6UX04 472 aaKnown RBP13.87□□□□□ -0.19
SRP54-203ENST00000553544 CCDC155Q8N6L0 562 aa13.87□□□□□ -0.19
SRP54-203ENST00000553544 SCFD2Q8WU76 684 aa13.87□□□□□ -0.19
SRP54-203ENST00000553544 RAD9AQ99638 391 aa13.87□□□□□ -0.19
SRP54-203ENST00000553544 RANBP17Q9H2T7 1088 aaKnown RBP13.87□□□□□ -0.19
SRP54-203ENST00000553544 PNMA2Q9UL42 364 aa13.87□□□□□ -0.19
SRP54-203ENST00000553544 MTMR7Q9Y216 660 aa13.87□□□□□ -0.19
SRP54-203ENST00000553544 MUC6Q6W4X9 2439 aa13.86□□□□□ -0.19
SRP54-203ENST00000553544 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.86□□□□□ -0.19
SRP54-203ENST00000553544 RANBP6O60518 1105 aaKnown RBP13.86□□□□□ -0.19
SRP54-203ENST00000553544 NMT2O60551 498 aa13.86□□□□□ -0.19
SRP54-203ENST00000553544 PARNO95453 639 aaKnown RBP13.86□□□□□ -0.19
SRP54-203ENST00000553544 PCP11498 1178 aaKnown RBP13.86□□□□□ -0.19
SRP54-203ENST00000553544 GSPT1P15170 499 aaKnown RBP13.86□□□□□ -0.19
SRP54-203ENST00000553544 CALML3P27482 149 aa13.86□□□□□ -0.19
SRP54-203ENST00000553544 CCDC96Q2M329 555 aa13.86□□□□□ -0.19
SRP54-203ENST00000553544 BTNL9Q6UXG8 535 aa13.86□□□□□ -0.19
SRP54-203ENST00000553544 RNF207Q6ZRF8 634 aa13.86□□□□□ -0.19
SRP54-203ENST00000553544 GJD3Q8N144 294 aa13.86□□□□□ -0.19
SRP54-203ENST00000553544 CAGE1Q8TC20 777 aa13.86□□□□□ -0.19
SRP54-203ENST00000553544 AFAP1L1Q8TED9 768 aa13.86□□□□□ -0.19
SRP54-203ENST00000553544 PPP1R13LQ8WUF5 828 aa13.86□□□□□ -0.19
SRP54-203ENST00000553544 DCAF4Q8WV16 495 aa13.86□□□□□ -0.19
SRP54-203ENST00000553544 CD320Q9NPF0 282 aa13.86□□□□□ -0.19
SRP54-203ENST00000553544 TCP11L1Q9NUJ3 509 aa13.86□□□□□ -0.19
SRP54-203ENST00000553544 LCHNA4D1U4 455 aa13.85□□□□□ -0.19
SRP54-203ENST00000553544 PRR33A8MZF0 331 aa13.85□□□□□ -0.19
SRP54-203ENST00000553544 NFIBO00712 420 aa13.85□□□□□ -0.19
SRP54-203ENST00000553544 TXNP10599 105 aaKnown RBP13.85□□□□□ -0.19
SRP54-203ENST00000553544 ALADP13716 330 aa13.85□□□□□ -0.19
SRP54-203ENST00000553544 SLC16A2P36021 539 aa13.85□□□□□ -0.19
SRP54-203ENST00000553544 WDR5P61964 334 aaKnown RBP13.85□□□□□ -0.19
SRP54-203ENST00000553544 TTC22Q5TAA0 569 aa13.85□□□□□ -0.19
SRP54-203ENST00000553544 SYDE2Q5VT97 1194 aa13.85□□□□□ -0.19
SRP54-203ENST00000553544 TTBK2Q6IQ55 1244 aa13.85□□□□□ -0.19
SRP54-203ENST00000553544 ALYREFQ86V81 257 aaKnown RBP13.85□□□□□ -0.19
SRP54-203ENST00000553544 TGS1Q96RS0 853 aaKnown RBP13.85□□□□□ -0.19
SRP54-203ENST00000553544 SUGCTQ9HAC7 445 aa13.85□□□□□ -0.19
SRP54-203ENST00000553544 DIAPH3Q9NSV4 1193 aa13.85□□□□□ -0.19
SRP54-203ENST00000553544 ABHD14A-ACY1A0A1B0GW23 586 aa13.84□□□□□ -0.19
SRP54-203ENST00000553544 SELPP16109 830 aa13.84□□□□□ -0.19
SRP54-203ENST00000553544 HAND2P61296 217 aa13.84□□□□□ -0.19
SRP54-203ENST00000553544 ERVK-21P61565 698 aa13.84□□□□□ -0.19
SRP54-203ENST00000553544 LEXMQ3ZCV2 418 aa13.84□□□□□ -0.19
SRP54-203ENST00000553544 CNKSR3Q6P9H4 555 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms