RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 KLHL10Q6JEL2 608 aa29.6■■■□□ 2.33
CCDC88C-205ENST00000553403 SMYD4Q8IYR2 804 aaPredicted RBP29.6■■■□□ 2.33
CCDC88C-205ENST00000553403 KCNMB3Q9NPA1 279 aa29.6■■■□□ 2.33
CCDC88C-205ENST00000553403 SPDYE3A6NKU9 549 aa29.6■■■□□ 2.33
CCDC88C-205ENST00000553403 OPLAHO14841 1288 aa29.6■■■□□ 2.33
CCDC88C-205ENST00000553403 MARCH6O60337 910 aa29.6■■■□□ 2.33
CCDC88C-205ENST00000553403 SREBF1P36956 1147 aa29.6■■■□□ 2.33
CCDC88C-205ENST00000553403 KMT5BQ4FZB7 885 aa29.6■■■□□ 2.33
CCDC88C-205ENST00000553403 TBC1D10BQ4KMP7 808 aaPredicted RBP29.6■■■□□ 2.33
CCDC88C-205ENST00000553403 CCDC150Q8NCX0 1101 aa29.6■■■□□ 2.33
CCDC88C-205ENST00000553403 CCDC47Q96A33 483 aaKnown RBP29.6■■■□□ 2.33
CCDC88C-205ENST00000553403 PNMA5Q96PV4 448 aa29.6■■■□□ 2.33
CCDC88C-205ENST00000553403 FRMD4AQ9P2Q2 1039 aaPredicted RBP29.6■■■□□ 2.33
CCDC88C-205ENST00000553403 HACL1Q9UJ83 578 aa29.6■■■□□ 2.33
CCDC88C-205ENST00000553403 ATAD5Q96QE3 1844 aa29.59■■■□□ 2.33
CCDC88C-205ENST00000553403 CTNND1O60716 968 aaKnown RBP29.59■■■□□ 2.33
CCDC88C-205ENST00000553403 CDK5RAP3Q96JB5 506 aa29.59■■■□□ 2.33
CCDC88C-205ENST00000553403 NAP1L5Q96NT1 182 aaPredicted RBP29.59■■■□□ 2.33
CCDC88C-205ENST00000553403 SAMSN1Q9NSI8 373 aaKnown RBP29.59■■■□□ 2.33
CCDC88C-205ENST00000553403 CTNND2Q9UQB3 1225 aa29.59■■■□□ 2.33
CCDC88C-205ENST00000553403 TMEM119Q4V9L6 283 aa29.58■■■□□ 2.33
CCDC88C-205ENST00000553403 VSTM4Q8IW00 320 aa29.58■■■□□ 2.33
CCDC88C-205ENST00000553403 SLFN12Q8IYM2 578 aa29.58■■■□□ 2.33
CCDC88C-205ENST00000553403 P2RX7Q99572 595 aaKnown RBP29.58■■■□□ 2.33
CCDC88C-205ENST00000553403 GLIS2Q9BZE0 524 aaPredicted RBP29.58■■■□□ 2.33
CCDC88C-205ENST00000553403 TRIM9Q9C026 710 aa29.58■■■□□ 2.33
CCDC88C-205ENST00000553403 PCDHA12Q9UN75 941 aa29.58■■■□□ 2.33
CCDC88C-205ENST00000553403 ZNF541Q9H0D2 1346 aa29.58■■■□□ 2.33
CCDC88C-205ENST00000553403 TBX3O15119 743 aa29.57■■■□□ 2.32
CCDC88C-205ENST00000553403 PAK1Q13153 545 aa29.57■■■□□ 2.32
CCDC88C-205ENST00000553403 ZYXQ15942 572 aaKnown RBP29.57■■■□□ 2.32
CCDC88C-205ENST00000553403 Q4G0T1 1027 aa29.57■■■□□ 2.32
CCDC88C-205ENST00000553403 CDKAL1Q5VV42 579 aa29.57■■■□□ 2.32
CCDC88C-205ENST00000553403 SV2BQ7L1I2 683 aa29.57■■■□□ 2.32
CCDC88C-205ENST00000553403 SNX29Q8TEQ0 813 aa29.57■■■□□ 2.32
CCDC88C-205ENST00000553403 KIFC2Q96AC6 838 aa29.57■■■□□ 2.32
CCDC88C-205ENST00000553403 POTEMA6NI47 508 aa29.56■■■□□ 2.32
CCDC88C-205ENST00000553403 H7C1D1 291 aa29.56■■■□□ 2.32
CCDC88C-205ENST00000553403 CIITAP33076 1130 aa29.56■■■□□ 2.32
CCDC88C-205ENST00000553403 STX17P56962 302 aa29.56■■■□□ 2.32
CCDC88C-205ENST00000553403 LPAR1Q92633 364 aa29.56■■■□□ 2.32
CCDC88C-205ENST00000553403 FEZ1Q99689 392 aa29.56■■■□□ 2.32
CCDC88C-205ENST00000553403 ZNF341Q9BYN7 854 aa29.56■■■□□ 2.32
CCDC88C-205ENST00000553403 DEFB129Q9H1M3 183 aa29.56■■■□□ 2.32
CCDC88C-205ENST00000553403 BLOC1S4Q9NUP1 217 aa29.56■■■□□ 2.32
CCDC88C-205ENST00000553403 MRPL11Q9Y3B7 192 aaKnown RBP29.56■■■□□ 2.32
CCDC88C-205ENST00000553403 CYP3A4P08684 503 aa29.56■■■□□ 2.32
CCDC88C-205ENST00000553403 HYIQ5T013 277 aa29.56■■■□□ 2.32
CCDC88C-205ENST00000553403 ADSSL1Q8N142 457 aa29.56■■■□□ 2.32
CCDC88C-205ENST00000553403 LRRC27Q9C0I9 530 aa29.56■■■□□ 2.32
CCDC88C-205ENST00000553403 KIAA1683Q9H0B3 1180 aa29.56■■■□□ 2.32
CCDC88C-205ENST00000553403 SCAF8Q9UPN6 1271 aaKnown RBP29.56■■■□□ 2.32
CCDC88C-205ENST00000553403 ARID5BQ14865 1188 aa29.55■■■□□ 2.32
CCDC88C-205ENST00000553403 GIMAP8Q8ND71 665 aaPredicted RBP29.55■■■□□ 2.32
CCDC88C-205ENST00000553403 NELFBQ8WX92 580 aa29.55■■■□□ 2.32
CCDC88C-205ENST00000553403 HOOK2Q96ED9 719 aa29.55■■■□□ 2.32
CCDC88C-205ENST00000553403 INTS13Q9NVM9 706 aa29.55■■■□□ 2.32
CCDC88C-205ENST00000553403 GDAQ9Y2T3 454 aa29.55■■■□□ 2.32
CCDC88C-205ENST00000553403 ASTN2O75129 1339 aaPredicted RBP29.55■■■□□ 2.32
CCDC88C-205ENST00000553403 WDR46O15213 610 aaKnown RBP29.54■■■□□ 2.32
CCDC88C-205ENST00000553403 PPP1R2P41236 205 aa29.54■■■□□ 2.32
CCDC88C-205ENST00000553403 PRCPP42785 496 aa29.54■■■□□ 2.32
CCDC88C-205ENST00000553403 STIM1Q13586 685 aa29.54■■■□□ 2.32
CCDC88C-205ENST00000553403 DCAF15Q66K64 600 aa29.54■■■□□ 2.32
CCDC88C-205ENST00000553403 APOBEC3FQ8IUX4 373 aaKnown RBP29.54■■■□□ 2.32
CCDC88C-205ENST00000553403 C17orf53Q8N3J3 647 aaPredicted RBP29.54■■■□□ 2.32
CCDC88C-205ENST00000553403 LARP4BQ92615 738 aaKnown RBP29.54■■■□□ 2.32
CCDC88C-205ENST00000553403 RAD54LQ92698 747 aa29.54■■■□□ 2.32
CCDC88C-205ENST00000553403 ABCB11O95342 1321 aa29.54■■■□□ 2.32
CCDC88C-205ENST00000553403 KDM3AQ9Y4C1 1321 aa29.54■■■□□ 2.32
CCDC88C-205ENST00000553403 C1QTNF8P60827 252 aa29.53■■■□□ 2.32
CCDC88C-205ENST00000553403 CCZ1BP86790 482 aa29.53■■■□□ 2.32
CCDC88C-205ENST00000553403 CCZ1P86791 482 aaPredicted RBP29.53■■■□□ 2.32
CCDC88C-205ENST00000553403 TPD52L1Q16890 204 aaPredicted RBP29.53■■■□□ 2.32
CCDC88C-205ENST00000553403 CNNM4Q6P4Q7 775 aa29.53■■■□□ 2.32
CCDC88C-205ENST00000553403 CCDC174Q6PII3 467 aa29.53■■■□□ 2.32
CCDC88C-205ENST00000553403 CTAGE1Q96RT6 745 aa29.53■■■□□ 2.32
CCDC88C-205ENST00000553403 TAL1P17542 331 aaPredicted RBP29.53■■■□□ 2.32
CCDC88C-205ENST00000553403 HOXA7P31268 230 aaPredicted RBP29.53■■■□□ 2.32
CCDC88C-205ENST00000553403 ASIC1P78348 528 aa29.53■■■□□ 2.32
CCDC88C-205ENST00000553403 C9orf131Q5VYM1 1079 aa29.53■■■□□ 2.32
CCDC88C-205ENST00000553403 CCDC84Q86UT8 332 aaPredicted RBP29.53■■■□□ 2.32
CCDC88C-205ENST00000553403 ETNPPLQ8TBG4 499 aa29.53■■■□□ 2.32
CCDC88C-205ENST00000553403 EXOC1Q9NV70 894 aa29.53■■■□□ 2.32
CCDC88C-205ENST00000553403 A0A1B0GTH6 734 aa29.52■■■□□ 2.32
CCDC88C-205ENST00000553403 GCOM1H8Y6P7 765 aaPredicted RBP29.52■■■□□ 2.32
CCDC88C-205ENST00000553403 POLR2MP0CAP2 368 aa29.52■■■□□ 2.32
CCDC88C-205ENST00000553403 HSP90AA4PQ58FG1 418 aa29.52■■■□□ 2.32
CCDC88C-205ENST00000553403 FAM20AQ96MK3 541 aa29.52■■■□□ 2.32
CCDC88C-205ENST00000553403 NUDT12Q9BQG2 462 aa29.52■■■□□ 2.32
CCDC88C-205ENST00000553403 NT5C3AQ9H0P0 336 aa29.52■■■□□ 2.32
CCDC88C-205ENST00000553403 SKILP12757 684 aa29.51■■■□□ 2.31
CCDC88C-205ENST00000553403 SFPQP23246 707 aaKnown RBP eCLIP29.51■■■□□ 2.31
CCDC88C-205ENST00000553403 HOXA13P31271 388 aaPredicted RBP29.51■■■□□ 2.31
CCDC88C-205ENST00000553403 SPAG1Q07617 926 aa29.51■■■□□ 2.31
CCDC88C-205ENST00000553403 MCM6Q14566 821 aa29.51■■■□□ 2.31
CCDC88C-205ENST00000553403 NR1I3Q14994 352 aa29.51■■■□□ 2.31
CCDC88C-205ENST00000553403 COBLL1Q53SF7 1204 aa29.51■■■□□ 2.31
CCDC88C-205ENST00000553403 ARMCX5Q6P1M9 558 aa29.51■■■□□ 2.31
CCDC88C-205ENST00000553403 APTXQ7Z2E3 356 aaKnown RBP29.51■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms