RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 ASGR1P07306 291 aa22.34■■□□□ 1.17
PTCH1-227ENST00000553256 C6orf222P0C671 652 aaPredicted RBP22.34■■□□□ 1.17
PTCH1-227ENST00000553256 CDK7P50613 346 aa22.34■■□□□ 1.17
PTCH1-227ENST00000553256 RCAN1P53805 252 aa22.34■■□□□ 1.17
PTCH1-227ENST00000553256 TRIM60Q495X7 471 aa22.34■■□□□ 1.17
PTCH1-227ENST00000553256 RMDN3Q96TC7 470 aa22.34■■□□□ 1.17
PTCH1-227ENST00000553256 RBM27Q9P2N5 1060 aaKnown RBP22.34■■□□□ 1.17
PTCH1-227ENST00000553256 NID2Q14112 1375 aa22.34■■□□□ 1.17
PTCH1-227ENST00000553256 RGS20O76081 388 aa22.33■■□□□ 1.17
PTCH1-227ENST00000553256 CFBP00751 764 aa22.33■■□□□ 1.17
PTCH1-227ENST00000553256 SYN1P17600 705 aa22.33■■□□□ 1.17
PTCH1-227ENST00000553256 EVCP57679 992 aa22.33■■□□□ 1.17
PTCH1-227ENST00000553256 BEX3Q00994 111 aa22.33■■□□□ 1.17
PTCH1-227ENST00000553256 MICU3Q86XE3 530 aa22.33■■□□□ 1.17
PTCH1-227ENST00000553256 SLC43A3Q8NBI5 491 aa22.33■■□□□ 1.17
PTCH1-227ENST00000553256 JAKMIP1Q96N16 626 aaKnown RBP22.33■■□□□ 1.17
PTCH1-227ENST00000553256 PDCD2LQ9BRP1 358 aa22.33■■□□□ 1.17
PTCH1-227ENST00000553256 WDR11Q9BZH6 1224 aa22.33■■□□□ 1.17
PTCH1-227ENST00000553256 GRIN2DO15399 1336 aa22.32■■□□□ 1.16
PTCH1-227ENST00000553256 ELP1O95163 1332 aa22.32■■□□□ 1.16
PTCH1-227ENST00000553256 CNTNAP5Q8WYK1 1306 aa22.32■■□□□ 1.16
PTCH1-227ENST00000553256 MYCNP04198 464 aaPredicted RBP22.32■■□□□ 1.16
PTCH1-227ENST00000553256 RPS6KB1P23443 525 aa22.32■■□□□ 1.16
PTCH1-227ENST00000553256 HOXA13P31271 388 aaPredicted RBP22.32■■□□□ 1.16
PTCH1-227ENST00000553256 BMP8BP34820 402 aa22.32■■□□□ 1.16
PTCH1-227ENST00000553256 PDE4DQ08499 809 aa22.32■■□□□ 1.16
PTCH1-227ENST00000553256 TRAF1Q13077 416 aa22.32■■□□□ 1.16
PTCH1-227ENST00000553256 GNASQ5JWF2 1037 aa22.32■■□□□ 1.16
PTCH1-227ENST00000553256 ANKRD33Q7Z3H0 272 aa22.32■■□□□ 1.16
PTCH1-227ENST00000553256 PCSK9Q8NBP7 692 aaKnown RBP22.32■■□□□ 1.16
PTCH1-227ENST00000553256 IL31RAQ8NI17 732 aa22.32■■□□□ 1.16
PTCH1-227ENST00000553256 PIK3CDO00329 1044 aa22.31■■□□□ 1.16
PTCH1-227ENST00000553256 MEIS2O14770 477 aa22.31■■□□□ 1.16
PTCH1-227ENST00000553256 DYNC1LI2O43237 492 aaPredicted RBP22.31■■□□□ 1.16
PTCH1-227ENST00000553256 NR3C2P08235 984 aa22.31■■□□□ 1.16
PTCH1-227ENST00000553256 CDC27P30260 824 aa22.31■■□□□ 1.16
PTCH1-227ENST00000553256 FSCN1Q16658 493 aaKnown RBP22.31■■□□□ 1.16
PTCH1-227ENST00000553256 VSIG10LQ86VR7 867 aa22.31■■□□□ 1.16
PTCH1-227ENST00000553256 SCFD2Q8WU76 684 aa22.31■■□□□ 1.16
PTCH1-227ENST00000553256 RRP36Q96EU6 259 aaKnown RBP22.31■■□□□ 1.16
PTCH1-227ENST00000553256 ZSWIM6Q9HCJ5 1215 aa22.31■■□□□ 1.16
PTCH1-227ENST00000553256 PDLIM7Q9NR12 457 aa22.31■■□□□ 1.16
PTCH1-227ENST00000553256 EIF2AK2P19525 551 aaKnown RBP22.3■■□□□ 1.16
PTCH1-227ENST00000553256 MAGEA10P43363 369 aaPredicted RBP22.3■■□□□ 1.16
PTCH1-227ENST00000553256 TLE2Q04725 743 aa22.3■■□□□ 1.16
PTCH1-227ENST00000553256 Q6ZUG5 572 aa22.3■■□□□ 1.16
PTCH1-227ENST00000553256 SH3RF1Q7Z6J0 888 aa22.3■■□□□ 1.16
PTCH1-227ENST00000553256 PIBF1Q8WXW3 757 aa22.3■■□□□ 1.16
PTCH1-227ENST00000553256 COPS5Q92905 334 aa22.3■■□□□ 1.16
PTCH1-227ENST00000553256 IL17RAQ96F46 866 aa22.3■■□□□ 1.16
PTCH1-227ENST00000553256 TOX2Q96NM4 488 aa22.3■■□□□ 1.16
PTCH1-227ENST00000553256 SPC25Q9HBM1 224 aa22.3■■□□□ 1.16
PTCH1-227ENST00000553256 ATP11BQ9Y2G3 1177 aa22.3■■□□□ 1.16
PTCH1-227ENST00000553256 LTBP2Q14767 1821 aa22.29■■□□□ 1.16
PTCH1-227ENST00000553256 KLF18A0A0U1RQI7 1052 aa22.29■■□□□ 1.16
PTCH1-227ENST00000553256 TRIM43BA6NCK2 446 aa22.29■■□□□ 1.16
PTCH1-227ENST00000553256 GCOM1H8Y6P7 765 aaPredicted RBP22.29■■□□□ 1.16
PTCH1-227ENST00000553256 NKRFO15226 690 aaKnown RBP eCLIP22.29■■□□□ 1.16
PTCH1-227ENST00000553256 ZBTB43O43298 467 aa22.29■■□□□ 1.16
PTCH1-227ENST00000553256 EIF3JO75822 258 aaKnown RBP22.29■■□□□ 1.16
PTCH1-227ENST00000553256 POLR2MP0CAP2 368 aa22.29■■□□□ 1.16
PTCH1-227ENST00000553256 ITGB8P26012 769 aa22.29■■□□□ 1.16
PTCH1-227ENST00000553256 PGM5Q15124 567 aa22.29■■□□□ 1.16
PTCH1-227ENST00000553256 TYW1BQ6NUM6 668 aa22.29■■□□□ 1.16
PTCH1-227ENST00000553256 BLOC1S2Q6QNY1 142 aa22.29■■□□□ 1.16
PTCH1-227ENST00000553256 TRIM43Q96BQ3 446 aaPredicted RBP22.29■■□□□ 1.16
PTCH1-227ENST00000553256 TM6SF1Q9BZW5 370 aa22.29■■□□□ 1.16
PTCH1-227ENST00000553256 STARD7Q9NQZ5 370 aa22.29■■□□□ 1.16
PTCH1-227ENST00000553256 RBM28Q9NW13 759 aaKnown RBP22.29■■□□□ 1.16
PTCH1-227ENST00000553256 hCG_1642624A0A1W2PR95 340 aa22.28■■□□□ 1.16
PTCH1-227ENST00000553256 A6NJR5 290 aa22.28■■□□□ 1.16
PTCH1-227ENST00000553256 B4DLN1 442 aa22.28■■□□□ 1.16
PTCH1-227ENST00000553256 MRPL12P52815 198 aaKnown RBP22.28■■□□□ 1.16
PTCH1-227ENST00000553256 APOBRQ0VD83 1088 aa22.28■■□□□ 1.16
PTCH1-227ENST00000553256 FAAP100Q0VG06 881 aa22.28■■□□□ 1.16
PTCH1-227ENST00000553256 STXBP2Q15833 593 aa22.28■■□□□ 1.16
PTCH1-227ENST00000553256 ARHGEF16Q5VV41 709 aa22.28■■□□□ 1.16
PTCH1-227ENST00000553256 CXCL17Q6UXB2 119 aa22.28■■□□□ 1.16
PTCH1-227ENST00000553256 MPHOSPH6Q99547 160 aaKnown RBP22.28■■□□□ 1.16
PTCH1-227ENST00000553256 DDX41Q9UJV9 622 aaKnown RBP22.28■■□□□ 1.16
PTCH1-227ENST00000553256 MRPS9P82933 396 aaKnown RBP22.27■■□□□ 1.16
PTCH1-227ENST00000553256 ARHGAP1Q07960 439 aa22.27■■□□□ 1.16
PTCH1-227ENST00000553256 TOB2Q14106 344 aaPredicted RBP22.27■■□□□ 1.16
PTCH1-227ENST00000553256 RTN1Q16799 776 aa22.27■■□□□ 1.16
PTCH1-227ENST00000553256 USP17L6PQ6QN14 398 aa22.27■■□□□ 1.16
PTCH1-227ENST00000553256 CCDC82Q8N4S0 544 aa22.27■■□□□ 1.16
PTCH1-227ENST00000553256 BRF1Q92994 677 aa22.27■■□□□ 1.16
PTCH1-227ENST00000553256 GLT1D1Q96MS3 346 aa22.27■■□□□ 1.16
PTCH1-227ENST00000553256 AP5M1Q9H0R1 490 aa22.27■■□□□ 1.16
PTCH1-227ENST00000553256 KIAA1217Q5T5P2 1943 aa22.27■■□□□ 1.16
PTCH1-227ENST00000553256 A0A1W2PPC1 479 aa22.26■■□□□ 1.15
PTCH1-227ENST00000553256 ARVCFO00192 962 aa22.26■■□□□ 1.15
PTCH1-227ENST00000553256 KIAA0355O15063 1070 aa22.26■■□□□ 1.15
PTCH1-227ENST00000553256 TXNP10599 105 aaKnown RBP22.26■■□□□ 1.15
PTCH1-227ENST00000553256 CASTP20810 708 aaKnown RBP22.26■■□□□ 1.15
PTCH1-227ENST00000553256 ADD1P35611 737 aaKnown RBP22.26■■□□□ 1.15
PTCH1-227ENST00000553256 FXR1P51114 621 aaKnown RBP eCLIP22.26■■□□□ 1.15
PTCH1-227ENST00000553256 PURAQ00577 322 aaKnown RBP22.26■■□□□ 1.15
PTCH1-227ENST00000553256 TTLL4Q14679 1199 aa22.26■■□□□ 1.15
PTCH1-227ENST00000553256 PPP2R5BQ15173 497 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms