RNA–Protein interactions for RNA: ENST00000553145.1

HDAC4-217, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-217ENST00000553145 PXMP2Q9NR77 195 aa21.74■■□□□ 1.07
HDAC4-217ENST00000553145 KLF18A0A0U1RQI7 1052 aa21.73■■□□□ 1.07
HDAC4-217ENST00000553145 hCG_1642624A0A1W2PR95 340 aa21.73■■□□□ 1.07
HDAC4-217ENST00000553145 DYNC1LI2O43237 492 aaPredicted RBP21.73■■□□□ 1.07
HDAC4-217ENST00000553145 TRAF1Q13077 416 aa21.73■■□□□ 1.07
HDAC4-217ENST00000553145 DUSP28Q4G0W2 176 aa21.73■■□□□ 1.07
HDAC4-217ENST00000553145 C1orf53Q5VUE5 145 aa21.73■■□□□ 1.07
HDAC4-217ENST00000553145 BLOC1S2Q6QNY1 142 aa21.73■■□□□ 1.07
HDAC4-217ENST00000553145 SYNE3Q6ZMZ3 975 aa21.73■■□□□ 1.07
HDAC4-217ENST00000553145 CCDC82Q8N4S0 544 aa21.73■■□□□ 1.07
HDAC4-217ENST00000553145 B4DLN1 442 aa21.72■■□□□ 1.07
HDAC4-217ENST00000553145 ZBTB43O43298 467 aa21.72■■□□□ 1.07
HDAC4-217ENST00000553145 RPS6KB1P23443 525 aa21.72■■□□□ 1.07
HDAC4-217ENST00000553145 MRPL12P52815 198 aaKnown RBP21.72■■□□□ 1.07
HDAC4-217ENST00000553145 HABP4Q5JVS0 413 aaKnown RBP21.72■■□□□ 1.07
HDAC4-217ENST00000553145 ARHGEF16Q5VV41 709 aa21.72■■□□□ 1.07
HDAC4-217ENST00000553145 Q6ZUG5 572 aa21.72■■□□□ 1.07
HDAC4-217ENST00000553145 PCSK9Q8NBP7 692 aaKnown RBP21.72■■□□□ 1.07
HDAC4-217ENST00000553145 AP5M1Q9H0R1 490 aa21.72■■□□□ 1.07
HDAC4-217ENST00000553145 STARD7Q9NQZ5 370 aa21.72■■□□□ 1.07
HDAC4-217ENST00000553145 MAP3K20Q9NYL2 800 aaKnown RBP21.72■■□□□ 1.07
HDAC4-217ENST00000553145 RBM27Q9P2N5 1060 aaKnown RBP21.72■■□□□ 1.07
HDAC4-217ENST00000553145 SEC63Q9UGP8 760 aaKnown RBP21.72■■□□□ 1.07
HDAC4-217ENST00000553145 Q9Y3F1 56 aa21.72■■□□□ 1.07
HDAC4-217ENST00000553145 CNTNAP5Q8WYK1 1306 aa21.72■■□□□ 1.07
HDAC4-217ENST00000553145 GCOM1H8Y6P7 765 aaPredicted RBP21.71■■□□□ 1.07
HDAC4-217ENST00000553145 ARIH2O95376 493 aa21.71■■□□□ 1.07
HDAC4-217ENST00000553145 POLR2MP0CAP2 368 aa21.71■■□□□ 1.07
HDAC4-217ENST00000553145 CASTP20810 708 aaKnown RBP21.71■■□□□ 1.07
HDAC4-217ENST00000553145 APOBRQ0VD83 1088 aa21.71■■□□□ 1.07
HDAC4-217ENST00000553145 FSCN1Q16658 493 aaKnown RBP21.71■■□□□ 1.07
HDAC4-217ENST00000553145 RTN1Q16799 776 aa21.71■■□□□ 1.07
HDAC4-217ENST00000553145 SAMD3Q8N6K7 520 aa21.71■■□□□ 1.07
HDAC4-217ENST00000553145 IL31RAQ8NI17 732 aa21.71■■□□□ 1.07
HDAC4-217ENST00000553145 SCFD2Q8WU76 684 aa21.71■■□□□ 1.07
HDAC4-217ENST00000553145 COPS5Q92905 334 aa21.71■■□□□ 1.07
HDAC4-217ENST00000553145 BRF1Q92994 677 aa21.71■■□□□ 1.07
HDAC4-217ENST00000553145 IWS1Q96ST2 819 aa21.71■■□□□ 1.07
HDAC4-217ENST00000553145 PDCD2LQ9BRP1 358 aa21.71■■□□□ 1.07
HDAC4-217ENST00000553145 FAM217BQ9NTX9 383 aaPredicted RBP21.71■■□□□ 1.07
HDAC4-217ENST00000553145 GOLGA8AA7E2F4 631 aa21.7■■□□□ 1.06
HDAC4-217ENST00000553145 GOLGA8BA8MQT2 603 aa21.7■■□□□ 1.06
HDAC4-217ENST00000553145 NR3C2P08235 984 aa21.7■■□□□ 1.06
HDAC4-217ENST00000553145 CDC27P30260 824 aa21.7■■□□□ 1.06
HDAC4-217ENST00000553145 FGD1P98174 961 aa21.7■■□□□ 1.06
HDAC4-217ENST00000553145 FUT2Q10981 343 aa21.7■■□□□ 1.06
HDAC4-217ENST00000553145 PPP2R5BQ15173 497 aa21.7■■□□□ 1.06
HDAC4-217ENST00000553145 STXBP2Q15833 593 aa21.7■■□□□ 1.06
HDAC4-217ENST00000553145 FCHSD1Q86WN1 690 aa21.7■■□□□ 1.06
HDAC4-217ENST00000553145 GDF15Q99988 308 aa21.7■■□□□ 1.06
HDAC4-217ENST00000553145 RBM28Q9NW13 759 aaKnown RBP21.7■■□□□ 1.06
HDAC4-217ENST00000553145 MAGEA10P43363 369 aaPredicted RBP21.69■■□□□ 1.06
HDAC4-217ENST00000553145 TLE2Q04725 743 aa21.69■■□□□ 1.06
HDAC4-217ENST00000553145 CCDC62Q6P9F0 684 aa21.69■■□□□ 1.06
HDAC4-217ENST00000553145 CXCL17Q6UXB2 119 aa21.69■■□□□ 1.06
HDAC4-217ENST00000553145 GLT1D1Q96MS3 346 aa21.69■■□□□ 1.06
HDAC4-217ENST00000553145 AGXT2Q9BYV1 514 aa21.69■■□□□ 1.06
HDAC4-217ENST00000553145 PDLIM7Q9NR12 457 aa21.69■■□□□ 1.06
HDAC4-217ENST00000553145 NAP1L2Q9ULW6 460 aaPredicted RBP21.69■■□□□ 1.06
HDAC4-217ENST00000553145 LTBP2Q14767 1821 aa21.69■■□□□ 1.06
HDAC4-217ENST00000553145 DNAH12Q6ZR08 3092 aa21.68■■□□□ 1.06
HDAC4-217ENST00000553145 TXNP10599 105 aaKnown RBP21.68■■□□□ 1.06
HDAC4-217ENST00000553145 PSMA5P28066 241 aa21.68■■□□□ 1.06
HDAC4-217ENST00000553145 RCAN1P53805 252 aa21.68■■□□□ 1.06
HDAC4-217ENST00000553145 PGM5Q15124 567 aa21.68■■□□□ 1.06
HDAC4-217ENST00000553145 SEPT14Q6ZU15 432 aa21.68■■□□□ 1.06
HDAC4-217ENST00000553145 SH3RF1Q7Z6J0 888 aa21.68■■□□□ 1.06
HDAC4-217ENST00000553145 FBXL16Q8N461 479 aa21.68■■□□□ 1.06
HDAC4-217ENST00000553145 OR6J1Q8NGC5 347 aa21.68■■□□□ 1.06
HDAC4-217ENST00000553145 GPKOWQ92917 476 aaPredicted RBP eCLIP21.68■■□□□ 1.06
HDAC4-217ENST00000553145 ELP1O95163 1332 aa21.68■■□□□ 1.06
HDAC4-217ENST00000553145 KIAA1217Q5T5P2 1943 aa21.68■■□□□ 1.06
HDAC4-217ENST00000553145 FRMPD4Q14CM0 1322 aa21.67■■□□□ 1.06
HDAC4-217ENST00000553145 MEIS2O14770 477 aa21.67■■□□□ 1.06
HDAC4-217ENST00000553145 PQBP1O60828 265 aaKnown RBP21.67■■□□□ 1.06
HDAC4-217ENST00000553145 RGS20O76081 388 aa21.67■■□□□ 1.06
HDAC4-217ENST00000553145 MYCLP12524 364 aaPredicted RBP21.67■■□□□ 1.06
HDAC4-217ENST00000553145 TTLL4Q14679 1199 aa21.67■■□□□ 1.06
HDAC4-217ENST00000553145 USP17L6PQ6QN14 398 aa21.67■■□□□ 1.06
HDAC4-217ENST00000553145 ZFP91Q96JP5 570 aaPredicted RBP21.67■■□□□ 1.06
HDAC4-217ENST00000553145 ZSWIM6Q9HCJ5 1215 aa21.67■■□□□ 1.06
HDAC4-217ENST00000553145 NID2Q14112 1375 aa21.66■■□□□ 1.06
HDAC4-217ENST00000553145 TRIM43BA6NCK2 446 aa21.66■■□□□ 1.06
HDAC4-217ENST00000553145 NKRFO15226 690 aaKnown RBP eCLIP21.66■■□□□ 1.06
HDAC4-217ENST00000553145 EIF3JO75822 258 aaKnown RBP21.66■■□□□ 1.06
HDAC4-217ENST00000553145 ADD1P35611 737 aaKnown RBP21.66■■□□□ 1.06
HDAC4-217ENST00000553145 METAP2P50579 478 aaKnown RBP eCLIP21.66■■□□□ 1.06
HDAC4-217ENST00000553145 CDK7P50613 346 aa21.66■■□□□ 1.06
HDAC4-217ENST00000553145 MDM2Q00987 491 aaPredicted RBP21.66■■□□□ 1.06
HDAC4-217ENST00000553145 LY6KQ17RY6 165 aa21.66■■□□□ 1.06
HDAC4-217ENST00000553145 RUFY3Q7L099 469 aa21.66■■□□□ 1.06
HDAC4-217ENST00000553145 VTI1AQ96AJ9 217 aa21.66■■□□□ 1.06
HDAC4-217ENST00000553145 TRIM43Q96BQ3 446 aaPredicted RBP21.66■■□□□ 1.06
HDAC4-217ENST00000553145 PRDM5Q9NQX1 630 aaPredicted RBP21.66■■□□□ 1.06
HDAC4-217ENST00000553145 A0A0U1RQG5 324 aaPredicted RBP21.65■■□□□ 1.06
HDAC4-217ENST00000553145 TOB2Q14106 344 aaPredicted RBP21.65■■□□□ 1.06
HDAC4-217ENST00000553145 WWC2Q6AWC2 1192 aa21.65■■□□□ 1.06
HDAC4-217ENST00000553145 TYW1BQ6NUM6 668 aa21.65■■□□□ 1.06
HDAC4-217ENST00000553145 ANKRD33Q7Z3H0 272 aa21.65■■□□□ 1.06
HDAC4-217ENST00000553145 HEATR3Q7Z4Q2 680 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms