RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	TMEM62	Q0P6H9	643 aa		3.6	□□□□□ -1.83
PTCH1-223	ENST00000551623	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	3.6	□□□□□ -1.83
PTCH1-223	ENST00000551623	VWA3B	Q502W6	1294 aa		3.6	□□□□□ -1.83
PTCH1-223	ENST00000551623	LIPI	Q6XZB0	460 aa		3.6	□□□□□ -1.83
PTCH1-223	ENST00000551623	TTC9B	Q8N6N2	239 aa		3.6	□□□□□ -1.83
PTCH1-223	ENST00000551623	DNAJC5G	Q8N7S2	189 aa		3.6	□□□□□ -1.83
PTCH1-223	ENST00000551623	RNF141	Q8WVD5	230 aa		3.6	□□□□□ -1.83
PTCH1-223	ENST00000551623	DMRTB1	Q96MA1	342 aa		3.6	□□□□□ -1.83
PTCH1-223	ENST00000551623	C8orf49	Q96NF6	230 aa		3.6	□□□□□ -1.83
PTCH1-223	ENST00000551623	SPATA25	Q9BR10	227 aa		3.6	□□□□□ -1.83
PTCH1-223	ENST00000551623	ZMYM5	Q9UJ78	669 aa		3.6	□□□□□ -1.83
PTCH1-223	ENST00000551623	TACC3	Q9Y6A5	838 aa		3.6	□□□□□ -1.83
PTCH1-223	ENST00000551623	DUSP10	Q9Y6W6	482 aa		3.6	□□□□□ -1.83
PTCH1-223	ENST00000551623	PEAK1	Q9H792	1746 aa		3.6	□□□□□ -1.83
PTCH1-223	ENST00000551623	NAIP	Q13075	1403 aa		3.6	□□□□□ -1.83
PTCH1-223	ENST00000551623	NRXN1	Q9ULB1	1477 aa		3.6	□□□□□ -1.83
PTCH1-223	ENST00000551623	FMN2	Q9NZ56	1722 aa		3.59	□□□□□ -1.83
PTCH1-223	ENST00000551623	CRYBG1	Q9Y4K1	1723 aa		3.59	□□□□□ -1.83
PTCH1-223	ENST00000551623		A0A1B0GTL3	188 aa		3.59	□□□□□ -1.83
PTCH1-223	ENST00000551623	GFRA2	O00451	464 aa		3.59	□□□□□ -1.83
PTCH1-223	ENST00000551623	IGFBP6	P24592	240 aa	Predicted RBP	3.59	□□□□□ -1.83
PTCH1-223	ENST00000551623	WAPL	Q7Z5K2	1190 aa		3.59	□□□□□ -1.83
PTCH1-223	ENST00000551623	LSR	Q86X29	649 aa	Predicted RBP	3.59	□□□□□ -1.83
PTCH1-223	ENST00000551623	ADGRG2	Q8IZP9	1017 aa		3.59	□□□□□ -1.83
PTCH1-223	ENST00000551623	JMY	Q8N9B5	988 aa		3.59	□□□□□ -1.83
PTCH1-223	ENST00000551623	ANKRD24	Q8TF21	1146 aa		3.59	□□□□□ -1.83
PTCH1-223	ENST00000551623	PLCD4	Q9BRC7	762 aa		3.59	□□□□□ -1.83
PTCH1-223	ENST00000551623	SPATA31A1	Q5TZJ5	1347 aa		3.59	□□□□□ -1.83
PTCH1-223	ENST00000551623	COL24A1	Q17RW2	1714 aa		3.58	□□□□□ -1.84
PTCH1-223	ENST00000551623	RAB3GAP1	Q15042	981 aa		3.58	□□□□□ -1.84
PTCH1-223	ENST00000551623	CRIP3	Q6Q6R5	217 aa		3.58	□□□□□ -1.84
PTCH1-223	ENST00000551623	RNF111	Q6ZNA4	994 aa		3.58	□□□□□ -1.84
PTCH1-223	ENST00000551623	MCAT	Q8IVS2	390 aa	Known RBP	3.58	□□□□□ -1.84
PTCH1-223	ENST00000551623	CYB5D2	Q8WUJ1	264 aa		3.58	□□□□□ -1.84
PTCH1-223	ENST00000551623	DDX1	Q92499	740 aa	Known RBP	3.58	□□□□□ -1.84
PTCH1-223	ENST00000551623	LOXL4	Q96JB6	756 aa		3.58	□□□□□ -1.84
PTCH1-223	ENST00000551623	HHIPL1	Q96JK4	782 aa		3.58	□□□□□ -1.84
PTCH1-223	ENST00000551623	SAMD11	Q96NU1	681 aa		3.58	□□□□□ -1.84
PTCH1-223	ENST00000551623	MTFR1L	Q9H019	292 aa		3.58	□□□□□ -1.84
PTCH1-223	ENST00000551623	SUSD2	Q9UGT4	822 aa		3.58	□□□□□ -1.84
PTCH1-223	ENST00000551623	DHX57	Q6P158	1386 aa	Known RBP	3.58	□□□□□ -1.84
PTCH1-223	ENST00000551623	ABCC11	Q96J66	1382 aa		3.58	□□□□□ -1.84
PTCH1-223	ENST00000551623	ALS2	Q96Q42	1657 aa		3.58	□□□□□ -1.84
PTCH1-223	ENST00000551623	OVOS2	A0A0G2JMS6	1433 aa		3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	OVOS2	A0A0J9YW53	1432 aa		3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	PLA2G1B	P04054	148 aa	Known RBP	3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	PFKL	P17858	780 aa		3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	TGM1	P22735	817 aa		3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	ATP7B	P35670	1465 aa		3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	ARL4A	P40617	200 aa		3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	XPC	Q01831	940 aa	Predicted RBP	3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	PDE4B	Q07343	736 aa		3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	PAPPA	Q13219	1627 aa		3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	ROCK1	Q13464	1354 aa		3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	CLEC16A	Q2KHT3	1053 aa		3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	OVOS2	Q6IE36	1432 aa		3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	KRT28	Q7Z3Y7	464 aa		3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	ANKAR	Q7Z5J8	1434 aa		3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	VPS8	Q8N3P4	1428 aa		3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	FNIP1	Q8TF40	1166 aa		3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	ACSF2	Q96CM8	615 aa	Predicted RBP	3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	LNPK	Q9C0E8	428 aa		3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	SRCIN1	Q9C0H9	1055 aa		3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	PDGFD	Q9GZP0	370 aa	Predicted RBP	3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	TRPM3	Q9HCF6	1732 aa	Predicted RBP	3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	BTG4	Q9NY30	223 aa		3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	ATP10D	Q9P241	1426 aa		3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	PARP4	Q9UKK3	1724 aa	Known RBP	3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	UST	Q9Y2C2	406 aa		3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	IRS2	Q9Y4H2	1338 aa		3.57	□□□□□ -1.84
PTCH1-223	ENST00000551623	KNDC1	Q76NI1	1749 aa		3.56	□□□□□ -1.84
PTCH1-223	ENST00000551623	SSH2	Q76I76	1423 aa		3.56	□□□□□ -1.84
PTCH1-223	ENST00000551623	RPGRIP1L	Q68CZ1	1315 aa		3.56	□□□□□ -1.84
PTCH1-223	ENST00000551623	SH3D21	A4FU49	640 aa		3.56	□□□□□ -1.84
PTCH1-223	ENST00000551623	NUDT19	A8MXV4	375 aa		3.56	□□□□□ -1.84
PTCH1-223	ENST00000551623	NOBOX	O60393	691 aa		3.56	□□□□□ -1.84
PTCH1-223	ENST00000551623	FZD7	O75084	574 aa		3.56	□□□□□ -1.84
PTCH1-223	ENST00000551623	MSL3P1	P0C860	447 aa		3.56	□□□□□ -1.84
PTCH1-223	ENST00000551623	RTP1	P59025	263 aa		3.56	□□□□□ -1.84
PTCH1-223	ENST00000551623	LAPTM5	Q13571	262 aa		3.56	□□□□□ -1.84
PTCH1-223	ENST00000551623	KIR3DS1	Q14943	382 aa		3.56	□□□□□ -1.84
PTCH1-223	ENST00000551623	GALNT18	Q6P9A2	607 aa		3.56	□□□□□ -1.84
PTCH1-223	ENST00000551623	USP51	Q70EK9	711 aa		3.56	□□□□□ -1.84
PTCH1-223	ENST00000551623	SPRED1	Q7Z699	444 aa		3.56	□□□□□ -1.84
PTCH1-223	ENST00000551623	SAPCD2	Q86UD0	394 aa		3.56	□□□□□ -1.84
PTCH1-223	ENST00000551623	USHBP1	Q8N6Y0	703 aa		3.56	□□□□□ -1.84
PTCH1-223	ENST00000551623	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	3.56	□□□□□ -1.84
PTCH1-223	ENST00000551623	SETDB2	Q96T68	719 aa		3.56	□□□□□ -1.84
PTCH1-223	ENST00000551623	PCED1A	Q9H1Q7	454 aa		3.56	□□□□□ -1.84
PTCH1-223	ENST00000551623	ADAM30	Q9UKF2	790 aa		3.56	□□□□□ -1.84
PTCH1-223	ENST00000551623	CCDC9	Q9Y3X0	531 aa	Known RBP	3.56	□□□□□ -1.84
PTCH1-223	ENST00000551623	LMO7	Q8WWI1	1683 aa		3.55	□□□□□ -1.84
PTCH1-223	ENST00000551623	CLTCL1	P53675	1640 aa		3.55	□□□□□ -1.84
PTCH1-223	ENST00000551623	CPD	O75976	1380 aa		3.55	□□□□□ -1.84
PTCH1-223	ENST00000551623	TMEM82	A0PJX8	343 aa		3.55	□□□□□ -1.84
PTCH1-223	ENST00000551623	ZBTB7A	O95365	584 aa		3.55	□□□□□ -1.84
PTCH1-223	ENST00000551623	FBLN1	P23142	703 aa		3.55	□□□□□ -1.84
PTCH1-223	ENST00000551623	GJA9	P57773	515 aa		3.55	□□□□□ -1.84
PTCH1-223	ENST00000551623	SEPT6	Q14141	434 aa		3.55	□□□□□ -1.84
PTCH1-223	ENST00000551623	CBX2	Q14781	532 aa	Predicted RBP	3.55	□□□□□ -1.84

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