RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 GOLGA6L7A0A1B0GV03 622 aa17.29■□□□□ 0.36
CUX1-211ENST00000546411 TESPA1A2RU30 521 aaPredicted RBP17.29■□□□□ 0.36
CUX1-211ENST00000546411 USP17L10C9JJH3 530 aa17.29■□□□□ 0.36
CUX1-211ENST00000546411 FLOT1O75955 427 aa17.29■□□□□ 0.36
CUX1-211ENST00000546411 DDX12PQ92771 950 aa17.29■□□□□ 0.36
CUX1-211ENST00000546411 CCDC127Q96BQ5 260 aa17.29■□□□□ 0.36
CUX1-211ENST00000546411 SELENOSQ9BQE4 189 aa17.29■□□□□ 0.36
CUX1-211ENST00000546411 MXD3Q9BW11 206 aa17.29■□□□□ 0.36
CUX1-211ENST00000546411 NDST4Q9H3R1 872 aa17.29■□□□□ 0.36
CUX1-211ENST00000546411 EBAG9O00559 213 aa17.29■□□□□ 0.36
CUX1-211ENST00000546411 PNMA6AP0CW24 399 aaPredicted RBP17.29■□□□□ 0.36
CUX1-211ENST00000546411 TOB1P50616 345 aaPredicted RBP17.29■□□□□ 0.36
CUX1-211ENST00000546411 TROAPQ12815 778 aa17.29■□□□□ 0.36
CUX1-211ENST00000546411 AGXT2Q9BYV1 514 aa17.29■□□□□ 0.36
CUX1-211ENST00000546411 ABHD10Q9NUJ1 306 aa17.29■□□□□ 0.36
CUX1-211ENST00000546411 MOCS3O95396 460 aa17.28■□□□□ 0.36
CUX1-211ENST00000546411 MST1RQ04912 1400 aa17.28■□□□□ 0.36
CUX1-211ENST00000546411 AKR1B1P15121 316 aa17.28■□□□□ 0.36
CUX1-211ENST00000546411 PAIP2Q9BPZ3 127 aaKnown RBP17.28■□□□□ 0.36
CUX1-211ENST00000546411 SH2D4AQ9H788 454 aa17.28■□□□□ 0.36
CUX1-211ENST00000546411 TRPC5Q9UL62 973 aaPredicted RBP17.28■□□□□ 0.36
CUX1-211ENST00000546411 ADGRG1Q9Y653 693 aa17.28■□□□□ 0.36
CUX1-211ENST00000546411 IVLP07476 585 aa17.28■□□□□ 0.36
CUX1-211ENST00000546411 FXR1P51114 621 aaKnown RBP eCLIP17.28■□□□□ 0.36
CUX1-211ENST00000546411 TTBK2Q6IQ55 1244 aa17.28■□□□□ 0.36
CUX1-211ENST00000546411 CCDC17Q96LX7 622 aa17.28■□□□□ 0.36
CUX1-211ENST00000546411 CHP1Q99653 195 aa17.28■□□□□ 0.36
CUX1-211ENST00000546411 CUEDC2Q9H467 287 aa17.28■□□□□ 0.36
CUX1-211ENST00000546411 STK32BQ9NY57 414 aa17.28■□□□□ 0.36
CUX1-211ENST00000546411 ORC4O43929 436 aa17.27■□□□□ 0.36
CUX1-211ENST00000546411 FTCDO95954 541 aa17.27■□□□□ 0.36
CUX1-211ENST00000546411 STAT1P42224 750 aa17.27■□□□□ 0.36
CUX1-211ENST00000546411 NTRK3Q16288 839 aa17.27■□□□□ 0.36
CUX1-211ENST00000546411 GRIPAP1Q4V328 841 aa17.27■□□□□ 0.36
CUX1-211ENST00000546411 TTC19Q6DKK2 380 aaPredicted RBP17.27■□□□□ 0.36
CUX1-211ENST00000546411 MICALL1Q8N3F8 863 aa17.27■□□□□ 0.36
CUX1-211ENST00000546411 FAM133AQ8N9E0 248 aa17.27■□□□□ 0.36
CUX1-211ENST00000546411 TMEM60Q9H2L4 133 aa17.27■□□□□ 0.36
CUX1-211ENST00000546411 BARHL2Q9NY43 387 aa17.27■□□□□ 0.36
CUX1-211ENST00000546411 ADAMTS1Q9UHI8 967 aa17.27■□□□□ 0.36
CUX1-211ENST00000546411 SPATA31A1Q5TZJ5 1347 aa17.27■□□□□ 0.36
CUX1-211ENST00000546411 E9PMD0 336 aa17.27■□□□□ 0.36
CUX1-211ENST00000546411 MAN2A1Q16706 1144 aa17.27■□□□□ 0.36
CUX1-211ENST00000546411 ODR4Q5SWX8 454 aa17.27■□□□□ 0.36
CUX1-211ENST00000546411 USP37Q86T82 979 aa17.27■□□□□ 0.36
CUX1-211ENST00000546411 HDAC6Q9UBN7 1215 aa17.27■□□□□ 0.36
CUX1-211ENST00000546411 SYNCQ9H7C4 482 aa17.27■□□□□ 0.35
CUX1-211ENST00000546411 TDRD3Q9H7E2 651 aaKnown RBP17.27■□□□□ 0.35
CUX1-211ENST00000546411 RABGAP1Q9Y3P9 1069 aa17.27■□□□□ 0.35
CUX1-211ENST00000546411 GCOM1H8Y6P7 765 aaPredicted RBP17.26■□□□□ 0.35
CUX1-211ENST00000546411 MYZAPP0CAP1 466 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 ZBED6P86452 979 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 C2orf54Q08AI8 447 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 CDC37Q16543 378 aaPredicted RBP17.26■□□□□ 0.35
CUX1-211ENST00000546411 EXOC3L4Q17RC7 722 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 IFT20Q8IY31 132 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 MTA3Q9BTC8 594 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 BHMT2Q9H2M3 363 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 ST7Q9NRC1 585 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 GH2P01242 217 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 FGFR2P21802 821 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 SLC7A5Q01650 507 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 GRM4Q14833 912 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 SEPT2Q15019 361 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 PIGOQ8TEQ8 1089 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 CHURC1Q8WUH1 139 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 HYOU1Q9Y4L1 999 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 PRPF6O94906 941 aaKnown RBP17.26■□□□□ 0.35
CUX1-211ENST00000546411 PLA2G4BP0C869 781 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 ATP1A2P50993 1020 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 ZSCAN26Q16670 478 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 LRCH2Q5VUJ6 765 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 GSTA5Q7RTV2 222 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 KRT26Q7Z3Y9 468 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 FNBP1Q96RU3 617 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 PLVAPQ9BX97 442 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 EMILIN3Q9NT22 766 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 PPP1R7Q15435 360 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 KCTD16Q68DU8 428 aa17.26■□□□□ 0.35
CUX1-211ENST00000546411 NDUFAB1O14561 156 aa17.25■□□□□ 0.35
CUX1-211ENST00000546411 POLR2MP0CAP2 368 aa17.25■□□□□ 0.35
CUX1-211ENST00000546411 RCAN1P53805 252 aa17.25■□□□□ 0.35
CUX1-211ENST00000546411 RBM43Q6ZSC3 357 aaKnown RBP17.25■□□□□ 0.35
CUX1-211ENST00000546411 MIER3Q7Z3K6 550 aa17.25■□□□□ 0.35
CUX1-211ENST00000546411 SLFN12Q8IYM2 578 aa17.25■□□□□ 0.35
CUX1-211ENST00000546411 PNMA6FA0A0J9YX94 578 aa17.25■□□□□ 0.35
CUX1-211ENST00000546411 ACTN4O43707 911 aaKnown RBP17.25■□□□□ 0.35
CUX1-211ENST00000546411 LRRN2O75325 713 aa17.25■□□□□ 0.35
CUX1-211ENST00000546411 KRT27Q7Z3Y8 459 aa17.25■□□□□ 0.35
CUX1-211ENST00000546411 FOXP4Q8IVH2 680 aaPredicted RBP17.25■□□□□ 0.35
CUX1-211ENST00000546411 IMPG2Q9BZV3 1241 aa17.25■□□□□ 0.35
CUX1-211ENST00000546411 ARHGAP23Q9P227 1491 aa17.25■□□□□ 0.35
CUX1-211ENST00000546411 LGALS16A8MUM7 142 aa17.25■□□□□ 0.35
CUX1-211ENST00000546411 GBP2P32456 591 aaPredicted RBP17.25■□□□□ 0.35
CUX1-211ENST00000546411 GUCY2DQ02846 1103 aa17.25■□□□□ 0.35
CUX1-211ENST00000546411 FBXO33Q7Z6M2 555 aa17.25■□□□□ 0.35
CUX1-211ENST00000546411 CCDC155Q8N6L0 562 aa17.25■□□□□ 0.35
CUX1-211ENST00000546411 CNKSR2Q8WXI2 1034 aa17.25■□□□□ 0.35
CUX1-211ENST00000546411 ABCB6Q9NP58 842 aa17.25■□□□□ 0.35
CUX1-211ENST00000546411 PCDHA6Q9UN73 950 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms