RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 HSP90AA4PQ58FG1 418 aa16.13■□□□□ 0.17
VPS33A-209ENST00000544349 CCDC150Q8NCX0 1101 aa16.13■□□□□ 0.17
VPS33A-209ENST00000544349 P2RX7Q99572 595 aaKnown RBP16.13■□□□□ 0.17
VPS33A-209ENST00000544349 NAP1L4Q99733 375 aaKnown RBP16.13■□□□□ 0.17
VPS33A-209ENST00000544349 FANCLQ9NW38 375 aa16.13■□□□□ 0.17
VPS33A-209ENST00000544349 PP2D1A8MPX8 630 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 FOSP01100 380 aaPredicted RBP16.12■□□□□ 0.17
VPS33A-209ENST00000544349 GCFC2P16383 781 aaKnown RBP16.12■□□□□ 0.17
VPS33A-209ENST00000544349 PTPRAP18433 802 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 AFMP43652 599 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 USP11P51784 963 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 USP14P54578 494 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 FMR1Q06787 632 aaKnown RBP eCLIP16.12■□□□□ 0.17
VPS33A-209ENST00000544349 GOLGA8FQ08AF8 430 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 NCBP1Q09161 790 aaKnown RBP16.12■□□□□ 0.17
VPS33A-209ENST00000544349 GOLGA8DPQ0D2H9 430 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 MTMR2Q13614 643 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 NAA30Q147X3 362 aaPredicted RBP16.12■□□□□ 0.17
VPS33A-209ENST00000544349 MTERF4Q7Z6M4 381 aaKnown RBP16.12■□□□□ 0.17
VPS33A-209ENST00000544349 SPATA20Q8TB22 786 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 ANKRD7Q92527 254 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 SMARCE1Q969G3 411 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 AS3MTQ9HBK9 375 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 PICK1Q9NRD5 415 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 EMILIN3Q9NT22 766 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 INTS13Q9NVM9 706 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 PIK3CDO00329 1044 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 UBA7P41226 1012 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 TECP42680 631 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 SPP2Q13103 211 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 DGKZQ13574 1117 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 KARSQ15046 597 aaKnown RBP16.12■□□□□ 0.17
VPS33A-209ENST00000544349 DPY19L2Q6NUT2 758 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 PDXDC2PQ6P474 469 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 SAMD1Q6SPF0 538 aaPredicted RBP16.12■□□□□ 0.17
VPS33A-209ENST00000544349 TEX2Q8IWB9 1127 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 IGSF22Q8N9C0 903 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 PRPF38AQ8NAV1 312 aaKnown RBP16.12■□□□□ 0.17
VPS33A-209ENST00000544349 CRYGNQ8WXF5 182 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 DISC1Q9NRI5 854 aa16.12■□□□□ 0.17
VPS33A-209ENST00000544349 DDX25Q9UHL0 483 aaKnown RBP16.12■□□□□ 0.17
VPS33A-209ENST00000544349 SFPQP23246 707 aaKnown RBP eCLIP16.11■□□□□ 0.17
VPS33A-209ENST00000544349 TXKP42681 527 aa16.11■□□□□ 0.17
VPS33A-209ENST00000544349 BACE1P56817 501 aa16.11■□□□□ 0.17
VPS33A-209ENST00000544349 TRMT44Q8IYL2 757 aaKnown RBP16.11■□□□□ 0.17
VPS33A-209ENST00000544349 ZNF280CQ8ND82 737 aa16.11■□□□□ 0.17
VPS33A-209ENST00000544349 DCPSQ96C86 337 aaKnown RBP16.11■□□□□ 0.17
VPS33A-209ENST00000544349 SLF1Q9BQI6 1058 aa16.11■□□□□ 0.17
VPS33A-209ENST00000544349 KCND1Q9NSA2 647 aa16.11■□□□□ 0.17
VPS33A-209ENST00000544349 UTRNP46939 3433 aa16.11■□□□□ 0.17
VPS33A-209ENST00000544349 SPDYE3A6NKU9 549 aa16.1■□□□□ 0.17
VPS33A-209ENST00000544349 VCAM1P19320 739 aa16.1■□□□□ 0.17
VPS33A-209ENST00000544349 FXR2P51116 673 aaKnown RBP eCLIP16.1■□□□□ 0.17
VPS33A-209ENST00000544349 PTPN14Q15678 1187 aa16.1■□□□□ 0.17
VPS33A-209ENST00000544349 MOXD1Q6UVY6 613 aa16.1■□□□□ 0.17
VPS33A-209ENST00000544349 LDHDQ86WU2 507 aa16.1■□□□□ 0.17
VPS33A-209ENST00000544349 MED15Q96RN5 788 aa16.1■□□□□ 0.17
VPS33A-209ENST00000544349 MRPL11Q9Y3B7 192 aaKnown RBP16.1■□□□□ 0.17
VPS33A-209ENST00000544349 PHIPQ8WWQ0 1821 aa16.1■□□□□ 0.17
VPS33A-209ENST00000544349 CYP3A7-CYP3A51PA0A087WV96 503 aa16.1■□□□□ 0.17
VPS33A-209ENST00000544349 USP2O75604 605 aaPredicted RBP16.1■□□□□ 0.17
VPS33A-209ENST00000544349 SERPINC1P01008 464 aa16.1■□□□□ 0.17
VPS33A-209ENST00000544349 CYP3A7P24462 503 aa16.1■□□□□ 0.17
VPS33A-209ENST00000544349 HOXA13P31271 388 aaPredicted RBP16.1■□□□□ 0.17
VPS33A-209ENST00000544349 STAT6P42226 847 aa16.1■□□□□ 0.17
VPS33A-209ENST00000544349 UBASH3AP57075 661 aa16.1■□□□□ 0.17
VPS33A-209ENST00000544349 DPYDQ12882 1025 aa16.1■□□□□ 0.17
VPS33A-209ENST00000544349 NOL9Q5SY16 702 aaKnown RBP16.1■□□□□ 0.17
VPS33A-209ENST00000544349 TRIML1Q8N9V2 468 aa16.1■□□□□ 0.17
VPS33A-209ENST00000544349 CCDC112Q8NEF3 446 aa16.1■□□□□ 0.17
VPS33A-209ENST00000544349 PPP1R13BQ96KQ4 1090 aa16.1■□□□□ 0.17
VPS33A-209ENST00000544349 MBOAT7Q96N66 472 aa16.1■□□□□ 0.17
VPS33A-209ENST00000544349 ZHX2Q9Y6X8 837 aa16.1■□□□□ 0.17
VPS33A-209ENST00000544349 CASP1P29466 404 aa16.09■□□□□ 0.17
VPS33A-209ENST00000544349 SREBF1P36956 1147 aa16.09■□□□□ 0.17
VPS33A-209ENST00000544349 ARHGAP4P98171 946 aa16.09■□□□□ 0.17
VPS33A-209ENST00000544349 MORC3Q14149 939 aa16.09■□□□□ 0.17
VPS33A-209ENST00000544349 TMEM266Q2M3C6 531 aa16.09■□□□□ 0.17
VPS33A-209ENST00000544349 NAALADL2Q58DX5 795 aa16.09■□□□□ 0.17
VPS33A-209ENST00000544349 RRAGBQ5VZM2 374 aa16.09■□□□□ 0.17
VPS33A-209ENST00000544349 CABP7Q86V35 215 aa16.09■□□□□ 0.17
VPS33A-209ENST00000544349 VSTM4Q8IW00 320 aa16.09■□□□□ 0.17
VPS33A-209ENST00000544349 HAS1Q92839 578 aa16.09■□□□□ 0.17
VPS33A-209ENST00000544349 L3MBTL3Q96JM7 780 aaPredicted RBP16.09■□□□□ 0.17
VPS33A-209ENST00000544349 MTRQ99707 1265 aa16.09■□□□□ 0.17
VPS33A-209ENST00000544349 ZNF536O15090 1300 aa16.09■□□□□ 0.17
VPS33A-209ENST00000544349 ABCB11O95342 1321 aa16.09■□□□□ 0.17
VPS33A-209ENST00000544349 CFBP00751 764 aa16.09■□□□□ 0.17
VPS33A-209ENST00000544349 ICAM1P05362 532 aa16.09■□□□□ 0.17
VPS33A-209ENST00000544349 PDIA5Q14554 519 aa16.09■□□□□ 0.17
VPS33A-209ENST00000544349 DLK2Q6UY11 383 aa16.09■□□□□ 0.17
VPS33A-209ENST00000544349 SULF1Q8IWU6 871 aa16.09■□□□□ 0.17
VPS33A-209ENST00000544349 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.09■□□□□ 0.17
VPS33A-209ENST00000544349 TBC1D5Q92609 795 aa16.09■□□□□ 0.17
VPS33A-209ENST00000544349 STAMQ92783 540 aa16.09■□□□□ 0.17
VPS33A-209ENST00000544349 TANGO6Q9C0B7 1094 aa16.09■□□□□ 0.17
VPS33A-209ENST00000544349 RPAP3Q9H6T3 665 aaPredicted RBP16.09■□□□□ 0.17
VPS33A-209ENST00000544349 PAXBP1Q9Y5B6 917 aa16.09■□□□□ 0.17
VPS33A-209ENST00000544349 PRKG1Q13976 671 aa16.08■□□□□ 0.16
VPS33A-209ENST00000544349 RASSF8Q8NHQ8 419 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms