RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 RAG1P15918 1043 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 TCP10Q12799 353 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 NR1H3Q13133 447 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 ASPRV1Q53RT3 343 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 SARM1Q6SZW1 724 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 FNBP4Q8N3X1 1017 aaPredicted RBP8.54□□□□□ -1.04
VPS13D-211ENST00000543710 RBM46Q8TBY0 533 aaKnown RBP8.54□□□□□ -1.04
VPS13D-211ENST00000543710 WHAMMQ8TF30 809 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 FGFR1OP2Q9NVK5 253 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 KIAA1468Q9P260 1216 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 ITSN1Q15811 1721 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 CCL15-CCL14A0A0B4J2E2 113 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 YARSP54577 528 aaKnown RBP8.54□□□□□ -1.04
VPS13D-211ENST00000543710 CUL1Q13616 776 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 PRPSAP1Q14558 356 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 CCL15Q16663 113 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 OR8K1Q8NGG5 319 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 IPO4Q8TEX9 1081 aaKnown RBP8.54□□□□□ -1.04
VPS13D-211ENST00000543710 EYA1Q99502 592 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 KRT10P13645 584 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 SCP2P22307 547 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 ITGA6P23229 1130 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 PPARAQ07869 468 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 NOSTRINQ8IVI9 506 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 ANKRD13AQ8IZ07 590 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 GDPD2Q9HCC8 539 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 KLHL14Q9P2G3 628 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 LRWD1Q9UFC0 647 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 NARFQ9UHQ1 456 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 TMEM110-MUSTN1A8MSY1 372 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 E7EWF7 191 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 RGS2P41220 211 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 SNCBQ16143 134 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 AKNAD1Q5T1N1 836 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 CHST3Q7LGC8 479 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 MYOCDQ8IZQ8 938 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 GLT1D1Q96MS3 346 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 LZTFL1Q9NQ48 299 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 PRDM10Q9NQV6 1147 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 VWA3AA6NCI4 1184 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 ZNF233A6NK53 670 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 PCCAP05165 728 aaPredicted RBP8.53□□□□□ -1.04
VPS13D-211ENST00000543710 KRT5P13647 590 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 DPEP1P16444 411 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 KLHL30Q0D2K2 578 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 KRT40Q6A162 431 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 SND1Q7KZF4 910 aaKnown RBP eCLIP8.53□□□□□ -1.04
VPS13D-211ENST00000543710 GANCQ8TET4 914 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 CAPZA3Q96KX2 299 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 SLITRK6Q9H5Y7 841 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 TXLNGQ9NUQ3 528 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 CNOT7Q9UIV1 285 aaKnown RBP8.53□□□□□ -1.04
VPS13D-211ENST00000543710 ABCA6Q8N139 1617 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 PDE6CP51160 858 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 RAPGEF1Q13905 1077 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 KARSQ15046 597 aaKnown RBP8.53□□□□□ -1.04
VPS13D-211ENST00000543710 PEX26Q7Z412 305 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 NECAB2Q7Z6G3 386 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 LRRC8AQ8IWT6 810 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 KCTD17Q8N5Z5 321 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 SYMPKQ92797 1274 aaKnown RBP8.53□□□□□ -1.04
VPS13D-211ENST00000543710 TBC1D31Q96DN5 1066 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 PPP2R2CQ9Y2T4 447 aa8.53□□□□□ -1.04
VPS13D-211ENST00000543710 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.53□□□□□ -1.04
VPS13D-211ENST00000543710 TRPA1O75762 1119 aa8.52□□□□□ -1.04
VPS13D-211ENST00000543710 STAM2O75886 525 aa8.52□□□□□ -1.04
VPS13D-211ENST00000543710 SUPT20HL2P0C7V6 817 aa8.52□□□□□ -1.04
VPS13D-211ENST00000543710 MYCLP12524 364 aaPredicted RBP8.52□□□□□ -1.04
VPS13D-211ENST00000543710 PPP2R5AQ15172 486 aa8.52□□□□□ -1.04
VPS13D-211ENST00000543710 IFIH1Q9BYX4 1025 aaKnown RBP8.52□□□□□ -1.04
VPS13D-211ENST00000543710 KIF20BQ96Q89 1820 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 INO80Q9ULG1 1556 aaPredicted RBP8.52□□□□□ -1.05
VPS13D-211ENST00000543710 GPAA1O43292 621 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 RHOXF2BP0C7M4 288 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 POLR2BP30876 1174 aaKnown RBP8.52□□□□□ -1.05
VPS13D-211ENST00000543710 MAGEA1P43355 309 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 ZNF131P52739 623 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 SP4Q02446 784 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 TFDP1Q14186 410 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 GPATCH4Q5T3I0 446 aaKnown RBP8.52□□□□□ -1.05
VPS13D-211ENST00000543710 ZNF449Q6P9G9 518 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 TTC30AQ86WT1 665 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 RHOXF2Q9BQY4 288 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 CAPS2Q9BXY5 557 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 FAM129AQ9BZQ8 928 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 DHX36Q9H2U1 1008 aaKnown RBP8.52□□□□□ -1.05
VPS13D-211ENST00000543710 MSCO60682 206 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 MFAP3P55082 362 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 CTSWP56202 376 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 EIF4A1P60842 406 aaKnown RBP8.52□□□□□ -1.05
VPS13D-211ENST00000543710 ZNF658Q5TYW1 1059 aaPredicted RBP8.52□□□□□ -1.05
VPS13D-211ENST00000543710 PCGF5Q86SE9 256 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 RNF26Q9BY78 433 aaPredicted RBP8.52□□□□□ -1.05
VPS13D-211ENST00000543710 TMEM206Q9H813 350 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 USP6P35125 1406 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 HNRNPCL1O60812 293 aaKnown RBP8.52□□□□□ -1.05
VPS13D-211ENST00000543710 GGPS1O95749 300 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 SLC1A4P43007 532 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 DRP2Q13474 957 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 METTL23Q86XA0 190 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms