RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 NR1I3Q14994 352 aa6.4□□□□□ -1.38
PRKDC-210ENST00000541488 SV2CQ496J9 727 aa6.4□□□□□ -1.38
PRKDC-210ENST00000541488 FAM178BQ8IXR5 827 aa6.4□□□□□ -1.38
PRKDC-210ENST00000541488 BTN2A2Q8WVV5 523 aa6.4□□□□□ -1.38
PRKDC-210ENST00000541488 PWWP2AQ96N64 755 aa6.4□□□□□ -1.38
PRKDC-210ENST00000541488 LRP2BPQ9P2M1 347 aa6.4□□□□□ -1.38
PRKDC-210ENST00000541488 EMC9Q9Y3B6 208 aa6.4□□□□□ -1.38
PRKDC-210ENST00000541488 IRS4O14654 1257 aaPredicted RBP6.39□□□□□ -1.39
PRKDC-210ENST00000541488 FUCA1P04066 466 aa6.39□□□□□ -1.39
PRKDC-210ENST00000541488 TNFRSF1AP19438 455 aa6.39□□□□□ -1.39
PRKDC-210ENST00000541488 NCAPHQ15003 741 aa6.39□□□□□ -1.39
PRKDC-210ENST00000541488 MBLAC2Q68D91 279 aa6.39□□□□□ -1.39
PRKDC-210ENST00000541488 GTF2IRD2BQ6EKJ0 949 aa6.39□□□□□ -1.39
PRKDC-210ENST00000541488 GTF2IRD2Q86UP8 949 aa6.39□□□□□ -1.39
PRKDC-210ENST00000541488 FAM129CQ86XR2 697 aa6.39□□□□□ -1.39
PRKDC-210ENST00000541488 LZTR1Q8N653 840 aa6.39□□□□□ -1.39
PRKDC-210ENST00000541488 ZNF408Q9H9D4 720 aa6.39□□□□□ -1.39
PRKDC-210ENST00000541488 SIT1Q9Y3P8 196 aa6.39□□□□□ -1.39
PRKDC-210ENST00000541488 C7orf72A4D263 438 aa6.38□□□□□ -1.39
PRKDC-210ENST00000541488 SRGAP3O43295 1099 aa6.38□□□□□ -1.39
PRKDC-210ENST00000541488 THBDP07204 575 aa6.38□□□□□ -1.39
PRKDC-210ENST00000541488 CABP7Q86V35 215 aa6.38□□□□□ -1.39
PRKDC-210ENST00000541488 ALG3Q92685 438 aa6.38□□□□□ -1.39
PRKDC-210ENST00000541488 TINF2Q9BSI4 451 aa6.38□□□□□ -1.39
PRKDC-210ENST00000541488 ST7Q9NRC1 585 aa6.38□□□□□ -1.39
PRKDC-210ENST00000541488 MARCH2Q9P0N8 246 aa6.38□□□□□ -1.39
PRKDC-210ENST00000541488 SRRDQ9UH36 339 aa6.38□□□□□ -1.39
PRKDC-210ENST00000541488 ITGAVP06756 1048 aa6.37□□□□□ -1.39
PRKDC-210ENST00000541488 GLI4P10075 376 aa6.37□□□□□ -1.39
PRKDC-210ENST00000541488 NAT2P11245 290 aa6.37□□□□□ -1.39
PRKDC-210ENST00000541488 ECI1P42126 302 aa6.37□□□□□ -1.39
PRKDC-210ENST00000541488 CORO7P57737 925 aa6.37□□□□□ -1.39
PRKDC-210ENST00000541488 ARID5AQ03989 594 aa6.37□□□□□ -1.39
PRKDC-210ENST00000541488 INF2Q27J81 1249 aa6.37□□□□□ -1.39
PRKDC-210ENST00000541488 PRSS53Q2L4Q9 553 aa6.37□□□□□ -1.39
PRKDC-210ENST00000541488 MRM1Q6IN84 353 aaKnown RBP6.37□□□□□ -1.39
PRKDC-210ENST00000541488 POMZP3Q6PJE2 187 aa6.37□□□□□ -1.39
PRKDC-210ENST00000541488 TRIM59Q8IWR1 403 aa6.37□□□□□ -1.39
PRKDC-210ENST00000541488 CRACR2BQ8N4Y2 399 aaPredicted RBP6.37□□□□□ -1.39
PRKDC-210ENST00000541488 SLC16A11Q8NCK7 471 aa6.37□□□□□ -1.39
PRKDC-210ENST00000541488 HNRNPLLQ8WVV9 542 aaKnown RBP6.37□□□□□ -1.39
PRKDC-210ENST00000541488 PRKAG3Q9UGI9 489 aa6.37□□□□□ -1.39
PRKDC-210ENST00000541488 SUSD5O60279 629 aa6.36□□□□□ -1.39
PRKDC-210ENST00000541488 NPHS1O60500 1241 aa6.36□□□□□ -1.39
PRKDC-210ENST00000541488 NTRK1P04629 796 aa6.36□□□□□ -1.39
PRKDC-210ENST00000541488 SNRPB2P08579 225 aaKnown RBP6.36□□□□□ -1.39
PRKDC-210ENST00000541488 FGRP09769 529 aa6.36□□□□□ -1.39
PRKDC-210ENST00000541488 ATF2P15336 505 aa6.36□□□□□ -1.39
PRKDC-210ENST00000541488 PFKLP17858 780 aa6.36□□□□□ -1.39
PRKDC-210ENST00000541488 KCNJ6P48051 423 aa6.36□□□□□ -1.39
PRKDC-210ENST00000541488 SF1Q15637 639 aaKnown RBP6.36□□□□□ -1.39
PRKDC-210ENST00000541488 TNNI3KQ59H18 835 aa6.36□□□□□ -1.39
PRKDC-210ENST00000541488 FRMD5Q7Z6J6 570 aa6.36□□□□□ -1.39
PRKDC-210ENST00000541488 MCF2L2Q86YR7 1114 aa6.36□□□□□ -1.39
PRKDC-210ENST00000541488 TEX2Q8IWB9 1127 aa6.36□□□□□ -1.39
PRKDC-210ENST00000541488 ADGRG2Q8IZP9 1017 aa6.36□□□□□ -1.39
PRKDC-210ENST00000541488 NLGN2Q8NFZ4 835 aa6.36□□□□□ -1.39
PRKDC-210ENST00000541488 COPS5Q92905 334 aa6.36□□□□□ -1.39
PRKDC-210ENST00000541488 MRGPRX3Q96LB0 322 aa6.36□□□□□ -1.39
PRKDC-210ENST00000541488 MTA3Q9BTC8 594 aa6.36□□□□□ -1.39
PRKDC-210ENST00000541488 TMEFF2Q9UIK5 374 aaPredicted RBP6.36□□□□□ -1.39
PRKDC-210ENST00000541488 FAN1Q9Y2M0 1017 aa6.36□□□□□ -1.39
PRKDC-210ENST00000541488 GJB6O95452 261 aa6.35□□□□□ -1.39
PRKDC-210ENST00000541488 CYP4F3Q08477 520 aa6.35□□□□□ -1.39
PRKDC-210ENST00000541488 RTP5Q14D33 572 aa6.35□□□□□ -1.39
PRKDC-210ENST00000541488 ZNF227Q86WZ6 799 aa6.35□□□□□ -1.39
PRKDC-210ENST00000541488 FRS2Q8WU20 508 aa6.35□□□□□ -1.39
PRKDC-210ENST00000541488 NKX2-4Q9H2Z4 354 aa6.35□□□□□ -1.39
PRKDC-210ENST00000541488 LUC7LQ9NQ29 371 aaKnown RBP6.35□□□□□ -1.39
PRKDC-210ENST00000541488 R3HCC1Q9Y3T6 440 aaKnown RBP6.35□□□□□ -1.39
PRKDC-210ENST00000541488 TRBV23OR9-2A0A075B6M9 112 aa6.34□□□□□ -1.39
PRKDC-210ENST00000541488 A0A1B0GTL3 188 aa6.34□□□□□ -1.39
PRKDC-210ENST00000541488 PLA2G1BP04054 148 aaKnown RBP6.34□□□□□ -1.39
PRKDC-210ENST00000541488 ASGR2P07307 311 aa6.34□□□□□ -1.39
PRKDC-210ENST00000541488 FPR2P25090 351 aa6.34□□□□□ -1.39
PRKDC-210ENST00000541488 PMLP29590 882 aa6.34□□□□□ -1.39
PRKDC-210ENST00000541488 ZNF143P52747 638 aaPredicted RBP6.34□□□□□ -1.39
PRKDC-210ENST00000541488 FOXO4P98177 505 aa6.34□□□□□ -1.39
PRKDC-210ENST00000541488 FXNQ16595 210 aa6.34□□□□□ -1.39
PRKDC-210ENST00000541488 WWC2Q6AWC2 1192 aa6.34□□□□□ -1.39
PRKDC-210ENST00000541488 CELF2-AS1Q8N7Q2 184 aa6.34□□□□□ -1.39
PRKDC-210ENST00000541488 DPF3Q92784 378 aa6.34□□□□□ -1.39
PRKDC-210ENST00000541488 CYP26B1Q9NR63 512 aa6.34□□□□□ -1.39
PRKDC-210ENST00000541488 PALD1Q9ULE6 856 aa6.34□□□□□ -1.39
PRKDC-210ENST00000541488 IRS2Q9Y4H2 1338 aa6.33□□□□□ -1.4
PRKDC-210ENST00000541488 MATN3O15232 486 aa6.33□□□□□ -1.4
PRKDC-210ENST00000541488 PRICKLE3O43900 615 aaPredicted RBP6.33□□□□□ -1.4
PRKDC-210ENST00000541488 FSHBP01225 129 aa6.33□□□□□ -1.4
PRKDC-210ENST00000541488 FBLN1P23142 703 aa6.33□□□□□ -1.4
PRKDC-210ENST00000541488 IGFBP6P24592 240 aaPredicted RBP6.33□□□□□ -1.4
PRKDC-210ENST00000541488 TARBP2Q15633 366 aaKnown RBP6.33□□□□□ -1.4
PRKDC-210ENST00000541488 ANKS3Q6ZW76 656 aa6.33□□□□□ -1.4
PRKDC-210ENST00000541488 SORCS2Q96PQ0 1159 aa6.33□□□□□ -1.4
PRKDC-210ENST00000541488 SYT3Q9BQG1 590 aa6.33□□□□□ -1.4
PRKDC-210ENST00000541488 PODXL2Q9NZ53 605 aa6.33□□□□□ -1.4
PRKDC-210ENST00000541488 NUDT5Q9UKK9 219 aa6.33□□□□□ -1.4
PRKDC-210ENST00000541488 PMF1-BGLAPU3KQ54 211 aa6.33□□□□□ -1.4
PRKDC-210ENST00000541488 C22orf46C9J442 243 aa6.32□□□□□ -1.4
PRKDC-210ENST00000541488 NCAM1P13591 858 aa6.32□□□□□ -1.4
PRKDC-210ENST00000541488 CCDC103Q8IW40 242 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms