RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 CUL9Q8IWT3 2517 aa16.46■□□□□ 0.22
USP28-209ENST00000540925 ELP1O95163 1332 aa16.45■□□□□ 0.22
USP28-209ENST00000540925 LTBP2Q14767 1821 aa16.45■□□□□ 0.22
USP28-209ENST00000540925 ASGR1P07306 291 aa16.45■□□□□ 0.22
USP28-209ENST00000540925 RXRAP19793 462 aa16.45■□□□□ 0.22
USP28-209ENST00000540925 GNAQP50148 359 aa16.45■□□□□ 0.22
USP28-209ENST00000540925 FUT2Q10981 343 aa16.45■□□□□ 0.22
USP28-209ENST00000540925 TMTC3Q6ZXV5 915 aa16.45■□□□□ 0.22
USP28-209ENST00000540925 ANKRD33Q7Z3H0 272 aa16.45■□□□□ 0.22
USP28-209ENST00000540925 RMDN3Q96TC7 470 aa16.45■□□□□ 0.22
USP28-209ENST00000540925 AGXT2Q9BYV1 514 aa16.45■□□□□ 0.22
USP28-209ENST00000540925 WDR11Q9BZH6 1224 aa16.45■□□□□ 0.22
USP28-209ENST00000540925 SPC25Q9HBM1 224 aa16.45■□□□□ 0.22
USP28-209ENST00000540925 PXMP2Q9NR77 195 aa16.45■□□□□ 0.22
USP28-209ENST00000540925 A0A1W2PPC1 479 aa16.44■□□□□ 0.22
USP28-209ENST00000540925 B4DLN1 442 aa16.44■□□□□ 0.22
USP28-209ENST00000540925 CFBP00751 764 aa16.44■□□□□ 0.22
USP28-209ENST00000540925 CPA1P15085 419 aa16.44■□□□□ 0.22
USP28-209ENST00000540925 MAGEA10P43363 369 aaPredicted RBP16.44■□□□□ 0.22
USP28-209ENST00000540925 CDK7P50613 346 aa16.44■□□□□ 0.22
USP28-209ENST00000540925 MRPL12P52815 198 aaKnown RBP16.44■□□□□ 0.22
USP28-209ENST00000540925 RCAN1P53805 252 aa16.44■□□□□ 0.22
USP28-209ENST00000540925 BEX3Q00994 111 aa16.44■□□□□ 0.22
USP28-209ENST00000540925 FSCN1Q16658 493 aaKnown RBP16.44■□□□□ 0.22
USP28-209ENST00000540925 GNASQ5JWF2 1037 aa16.44■□□□□ 0.22
USP28-209ENST00000540925 CCDC62Q6P9F0 684 aa16.44■□□□□ 0.22
USP28-209ENST00000540925 SCFD2Q8WU76 684 aa16.44■□□□□ 0.22
USP28-209ENST00000540925 TOX2Q96NM4 488 aa16.44■□□□□ 0.22
USP28-209ENST00000540925 MPHOSPH6Q99547 160 aaKnown RBP16.44■□□□□ 0.22
USP28-209ENST00000540925 USP26Q9BXU7 913 aa16.44■□□□□ 0.22
USP28-209ENST00000540925 PDLIM7Q9NR12 457 aa16.44■□□□□ 0.22
USP28-209ENST00000540925 FAM217BQ9NTX9 383 aaPredicted RBP16.44■□□□□ 0.22
USP28-209ENST00000540925 ATP11BQ9Y2G3 1177 aa16.44■□□□□ 0.22
USP28-209ENST00000540925 FRMPD4Q14CM0 1322 aa16.44■□□□□ 0.22
USP28-209ENST00000540925 NID2Q14112 1375 aa16.43■□□□□ 0.22
USP28-209ENST00000540925 DYNC1LI2O43237 492 aaPredicted RBP16.43■□□□□ 0.22
USP28-209ENST00000540925 ARIH2O95376 493 aa16.43■□□□□ 0.22
USP28-209ENST00000540925 HOXA13P31271 388 aaPredicted RBP16.43■□□□□ 0.22
USP28-209ENST00000540925 TLE2Q04725 743 aa16.43■□□□□ 0.22
USP28-209ENST00000540925 MICU3Q86XE3 530 aa16.43■□□□□ 0.22
USP28-209ENST00000540925 RAB11FIP4Q86YS3 637 aa16.43■□□□□ 0.22
USP28-209ENST00000540925 CMTR1Q8N1G2 835 aaKnown RBP16.43■□□□□ 0.22
USP28-209ENST00000540925 SLC43A3Q8NBI5 491 aa16.43■□□□□ 0.22
USP28-209ENST00000540925 RRP36Q96EU6 259 aaKnown RBP16.43■□□□□ 0.22
USP28-209ENST00000540925 PDCD2LQ9BRP1 358 aa16.43■□□□□ 0.22
USP28-209ENST00000540925 STARD7Q9NQZ5 370 aa16.43■□□□□ 0.22
USP28-209ENST00000540925 KIAA1217Q5T5P2 1943 aa16.43■□□□□ 0.22
USP28-209ENST00000540925 TRIM43BA6NCK2 446 aa16.42■□□□□ 0.22
USP28-209ENST00000540925 PIK3CDO00329 1044 aa16.42■□□□□ 0.22
USP28-209ENST00000540925 NKRFO15226 690 aaKnown RBP eCLIP16.42■□□□□ 0.22
USP28-209ENST00000540925 RGS20O76081 388 aa16.42■□□□□ 0.22
USP28-209ENST00000540925 NR3C2P08235 984 aa16.42■□□□□ 0.22
USP28-209ENST00000540925 EIF2AK2P19525 551 aaKnown RBP16.42■□□□□ 0.22
USP28-209ENST00000540925 STXBP2Q15833 593 aa16.42■□□□□ 0.22
USP28-209ENST00000540925 TRIM43Q96BQ3 446 aaPredicted RBP16.42■□□□□ 0.22
USP28-209ENST00000540925 GLT1D1Q96MS3 346 aa16.42■□□□□ 0.22
USP28-209ENST00000540925 JAKMIP1Q96N16 626 aaKnown RBP16.42■□□□□ 0.22
USP28-209ENST00000540925 AP5M1Q9H0R1 490 aa16.42■□□□□ 0.22
USP28-209ENST00000540925 GRIN2DO15399 1336 aa16.42■□□□□ 0.22
USP28-209ENST00000540925 CNTNAP5Q8WYK1 1306 aa16.42■□□□□ 0.22
USP28-209ENST00000540925 A6NJR5 290 aa16.41■□□□□ 0.22
USP28-209ENST00000540925 GCOM1H8Y6P7 765 aaPredicted RBP16.41■□□□□ 0.22
USP28-209ENST00000540925 ZBTB43O43298 467 aa16.41■□□□□ 0.22
USP28-209ENST00000540925 EIF3JO75822 258 aaKnown RBP16.41■□□□□ 0.22
USP28-209ENST00000540925 POLR2MP0CAP2 368 aa16.41■□□□□ 0.22
USP28-209ENST00000540925 RPS6KB1P23443 525 aa16.41■□□□□ 0.22
USP28-209ENST00000540925 PPP2R5BQ15173 497 aa16.41■□□□□ 0.22
USP28-209ENST00000540925 ARHGEF16Q5VV41 709 aa16.41■□□□□ 0.22
USP28-209ENST00000540925 NOL8Q76FK4 1167 aaKnown RBP16.41■□□□□ 0.22
USP28-209ENST00000540925 SH3RF1Q7Z6J0 888 aa16.41■□□□□ 0.22
USP28-209ENST00000540925 VSIG10LQ86VR7 867 aa16.41■□□□□ 0.22
USP28-209ENST00000540925 IL31RAQ8NI17 732 aa16.41■□□□□ 0.22
USP28-209ENST00000540925 PIBF1Q8WXW3 757 aa16.41■□□□□ 0.22
USP28-209ENST00000540925 RBM28Q9NW13 759 aaKnown RBP16.41■□□□□ 0.22
USP28-209ENST00000540925 A0A0U1RQG5 324 aaPredicted RBP16.4■□□□□ 0.22
USP28-209ENST00000540925 KLF18A0A0U1RQI7 1052 aa16.4■□□□□ 0.22
USP28-209ENST00000540925 ARVCFO00192 962 aa16.4■□□□□ 0.22
USP28-209ENST00000540925 MEIS2O14770 477 aa16.4■□□□□ 0.22
USP28-209ENST00000540925 KIAA0355O15063 1070 aa16.4■□□□□ 0.22
USP28-209ENST00000540925 CABYRO75952 493 aa16.4■□□□□ 0.22
USP28-209ENST00000540925 EVCP57679 992 aa16.4■□□□□ 0.22
USP28-209ENST00000540925 FAAP100Q0VG06 881 aa16.4■□□□□ 0.22
USP28-209ENST00000540925 TTLL4Q14679 1199 aa16.4■□□□□ 0.22
USP28-209ENST00000540925 PGM5Q15124 567 aa16.4■□□□□ 0.22
USP28-209ENST00000540925 CXCL17Q6UXB2 119 aa16.4■□□□□ 0.22
USP28-209ENST00000540925 COPS5Q92905 334 aa16.4■□□□□ 0.22
USP28-209ENST00000540925 CLTBP09497 229 aa16.39■□□□□ 0.21
USP28-209ENST00000540925 TXNP10599 105 aaKnown RBP16.39■□□□□ 0.21
USP28-209ENST00000540925 ITGB8P26012 769 aa16.39■□□□□ 0.21
USP28-209ENST00000540925 CDC27P30260 824 aa16.39■□□□□ 0.21
USP28-209ENST00000540925 PURAQ00577 322 aaKnown RBP16.39■□□□□ 0.21
USP28-209ENST00000540925 ARHGAP1Q07960 439 aa16.39■□□□□ 0.21
USP28-209ENST00000540925 RTN1Q16799 776 aa16.39■□□□□ 0.21
USP28-209ENST00000540925 BLOC1S2Q6QNY1 142 aa16.39■□□□□ 0.21
USP28-209ENST00000540925 SYNE3Q6ZMZ3 975 aa16.39■□□□□ 0.21
USP28-209ENST00000540925 Q6ZUG5 572 aa16.39■□□□□ 0.21
USP28-209ENST00000540925 FAM126BQ8IXS8 530 aa16.39■□□□□ 0.21
USP28-209ENST00000540925 EMID1Q96A84 441 aaPredicted RBP16.39■□□□□ 0.21
USP28-209ENST00000540925 ZSWIM6Q9HCJ5 1215 aa16.39■□□□□ 0.21
USP28-209ENST00000540925 SEC63Q9UGP8 760 aaKnown RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms