RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 HOXA7P31268 230 aaPredicted RBP15.45■□□□□ 0.06
RTN3-210ENST00000540798 USP11P51784 963 aa15.45■□□□□ 0.06
RTN3-210ENST00000540798 ETF1P62495 437 aaKnown RBP15.45■□□□□ 0.06
RTN3-210ENST00000540798 SMAP1Q8IYB5 467 aaPredicted RBP15.45■□□□□ 0.06
RTN3-210ENST00000540798 TTLL6Q8N841 843 aa15.45■□□□□ 0.06
RTN3-210ENST00000540798 VPS33BQ9H267 617 aa15.45■□□□□ 0.06
RTN3-210ENST00000540798 PCDHA1Q9Y5I3 950 aa15.45■□□□□ 0.06
RTN3-210ENST00000540798 PVALEFA0A1B0GWK0 134 aa15.44■□□□□ 0.06
RTN3-210ENST00000540798 MEIS2O14770 477 aa15.44■□□□□ 0.06
RTN3-210ENST00000540798 AP3B2Q13367 1082 aa15.44■□□□□ 0.06
RTN3-210ENST00000540798 TOGARAM2Q6ZUX3 1019 aa15.44■□□□□ 0.06
RTN3-210ENST00000540798 SV2BQ7L1I2 683 aa15.44■□□□□ 0.06
RTN3-210ENST00000540798 RAD54LQ92698 747 aa15.44■□□□□ 0.06
RTN3-210ENST00000540798 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.44■□□□□ 0.063e-6■■■□□ 16.3
RTN3-210ENST00000540798 CNTNAP1P78357 1384 aa15.44■□□□□ 0.06
RTN3-210ENST00000540798 GOLGA6L9A6NEM1 432 aa15.44■□□□□ 0.06
RTN3-210ENST00000540798 CCNE1P24864 410 aa15.44■□□□□ 0.06
RTN3-210ENST00000540798 CCT6AP40227 531 aaKnown RBP15.44■□□□□ 0.06
RTN3-210ENST00000540798 EHHADHQ08426 723 aa15.44■□□□□ 0.06
RTN3-210ENST00000540798 PDE4DQ08499 809 aa15.44■□□□□ 0.06
RTN3-210ENST00000540798 STK4Q13043 487 aa15.44■□□□□ 0.06
RTN3-210ENST00000540798 MCTP2Q6DN12 878 aa15.44■□□□□ 0.06
RTN3-210ENST00000540798 PPFIBP1Q86W92 1011 aa15.44■□□□□ 0.06
RTN3-210ENST00000540798 ANKRD20A12PQ8NF67 263 aa15.44■□□□□ 0.06
RTN3-210ENST00000540798 ZNF507Q8TCN5 953 aa15.44■□□□□ 0.06
RTN3-210ENST00000540798 CCDC47Q96A33 483 aaKnown RBP15.44■□□□□ 0.06
RTN3-210ENST00000540798 NUDT12Q9BQG2 462 aa15.44■□□□□ 0.06
RTN3-210ENST00000540798 PDGFDQ9GZP0 370 aaPredicted RBP15.44■□□□□ 0.06
RTN3-210ENST00000540798 KCNMB3Q9NPA1 279 aa15.44■□□□□ 0.06
RTN3-210ENST00000540798 EXOC1Q9NV70 894 aa15.44■□□□□ 0.06
RTN3-210ENST00000540798 POTEMA6NI47 508 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 N4BP3O15049 544 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 NCBP1Q09161 790 aaKnown RBP15.43■□□□□ 0.06
RTN3-210ENST00000540798 TRIM14Q14142 442 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 RBM26Q5T8P6 1007 aaKnown RBP15.43■□□□□ 0.06
RTN3-210ENST00000540798 CNGA4Q8IV77 575 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 KIAA0895Q8NCT3 520 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 LARP4BQ92615 738 aaKnown RBP15.43■□□□□ 0.06
RTN3-210ENST00000540798 P2RX5Q93086 422 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 CSRNP1Q96S65 589 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 TAB2Q9NYJ8 693 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 MYMKA6NI61 221 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 GH2P01242 217 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 ASIC1P78348 528 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 SYT10Q6XYQ8 523 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 UNC13DQ70J99 1090 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 A0A1W2PQC6 194 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 LGALS16A8MUM7 142 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 USP17L15C9J2P7 530 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 USP17L13C9JLJ4 530 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 USP17L11C9JVI0 530 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 USP17L18D6R9N7 530 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 USP17L22D6RA61 530 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 USP17L17D6RBQ6 530 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 USP17L19D6RCP7 530 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 USP17L20D6RJB6 530 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 FANCGO15287 622 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 CASP14P31944 242 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 FXR1P51114 621 aaKnown RBP eCLIP15.43■□□□□ 0.06
RTN3-210ENST00000540798 USP17L24Q0WX57 530 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 SYDE2Q5VT97 1194 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 USP17L6PQ6QN14 398 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 FAM151AQ8WW52 585 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 ANO3Q9BYT9 981 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 VPS16Q9H269 839 aa15.43■□□□□ 0.06
RTN3-210ENST00000540798 A0A1W2PRG0 241 aa15.42■□□□□ 0.06
RTN3-210ENST00000540798 BICDL2A1A5D9 508 aa15.42■□□□□ 0.06
RTN3-210ENST00000540798 PSMD14O00487 310 aa15.42■□□□□ 0.06
RTN3-210ENST00000540798 MCM6Q14566 821 aa15.42■□□□□ 0.06
RTN3-210ENST00000540798 KRT79Q5XKE5 535 aa15.42■□□□□ 0.06
RTN3-210ENST00000540798 MTMR14Q8NCE2 650 aa15.42■□□□□ 0.06
RTN3-210ENST00000540798 SNX29Q8TEQ0 813 aa15.42■□□□□ 0.06
RTN3-210ENST00000540798 P2RX7Q99572 595 aaKnown RBP15.42■□□□□ 0.06
RTN3-210ENST00000540798 AMNQ9BXJ7 453 aa15.42■□□□□ 0.06
RTN3-210ENST00000540798 ZNF70Q9UC06 446 aaPredicted RBP15.42■□□□□ 0.06
RTN3-210ENST00000540798 FCER1AP12319 257 aa15.42■□□□□ 0.06
RTN3-210ENST00000540798 ECM1Q16610 540 aa15.42■□□□□ 0.06
RTN3-210ENST00000540798 SPDYE2Q495Y8 402 aa15.42■□□□□ 0.06
RTN3-210ENST00000540798 FKBP1CQ5VVH2 108 aa15.42■□□□□ 0.06
RTN3-210ENST00000540798 KCNK18Q7Z418 384 aa15.42■□□□□ 0.06
RTN3-210ENST00000540798 TEX2Q8IWB9 1127 aa15.42■□□□□ 0.06
RTN3-210ENST00000540798 BRCA1P38398 1863 aaKnown RBP15.41■□□□□ 0.06
RTN3-210ENST00000540798 BMP3P12645 472 aa15.41■□□□□ 0.06
RTN3-210ENST00000540798 FOXR2Q6PJQ5 311 aa15.41■□□□□ 0.06
RTN3-210ENST00000540798 TRIM47Q96LD4 638 aa15.41■□□□□ 0.06
RTN3-210ENST00000540798 NUP88Q99567 741 aaPredicted RBP15.41■□□□□ 0.06
RTN3-210ENST00000540798 SRRTQ9BXP5 876 aaKnown RBP15.41■□□□□ 0.06
RTN3-210ENST00000540798 ANKRD40Q6AI12 368 aa15.41■□□□□ 0.06
RTN3-210ENST00000540798 CENPPQ6IPU0 288 aa15.41■□□□□ 0.06
RTN3-210ENST00000540798 RAD9BQ6WBX8 426 aa15.41■□□□□ 0.06
RTN3-210ENST00000540798 MB21D1Q8N884 522 aa15.41■□□□□ 0.06
RTN3-210ENST00000540798 LRRC27Q9C0I9 530 aa15.41■□□□□ 0.06
RTN3-210ENST00000540798 FER1L6Q2WGJ9 1857 aa15.41■□□□□ 0.06
RTN3-210ENST00000540798 SOWAHDA6NJG2 315 aa15.41■□□□□ 0.06
RTN3-210ENST00000540798 OPLAHO14841 1288 aa15.41■□□□□ 0.06
RTN3-210ENST00000540798 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.41■□□□□ 0.06
RTN3-210ENST00000540798 ABHD10Q9NUJ1 306 aa15.41■□□□□ 0.06
RTN3-210ENST00000540798 RNF225M0QZC1 329 aaPredicted RBP15.4■□□□□ 0.06
RTN3-210ENST00000540798 MTF1Q14872 753 aa15.4■□□□□ 0.06
RTN3-210ENST00000540798 Q4G0T1 1027 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms