RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 UBXN1Q04323 297 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 RBL2Q08999 1139 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 AOC3Q16853 763 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 QRICH1Q2TAL8 776 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 FIGNQ5HY92 759 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 FKBP15Q5T1M5 1219 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 SYDE2Q5VT97 1194 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 FKBP1CQ5VVH2 108 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 TTI2Q6NXR4 508 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 BTNL9Q6UXG8 535 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 KCTD1Q719H9 257 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 FBXO11Q86XK2 927 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 GUF1Q8N442 669 aaKnown RBP7.41□□□□□ -1.22
USP28-206ENST00000538224 MNS1Q8NEH6 495 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 ZNF397Q8NF99 534 aaPredicted RBP7.41□□□□□ -1.22
USP28-206ENST00000538224 ERMNQ8TAM6 284 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 RAD54LQ92698 747 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 MBOAT7Q96N66 472 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 NUP88Q99567 741 aaPredicted RBP7.41□□□□□ -1.22
USP28-206ENST00000538224 MMTAG2Q9BU76 263 aaKnown RBP7.41□□□□□ -1.22
USP28-206ENST00000538224 MXD3Q9BW11 206 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 CCDC94Q9BW85 323 aaPredicted RBP7.41□□□□□ -1.22
USP28-206ENST00000538224 ANO3Q9BYT9 981 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 DNAJC18Q9H819 358 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 EHMT1Q9H9B1 1298 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 ABHD10Q9NUJ1 306 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 ZNHIT6Q9NWK9 470 aaKnown RBP7.41□□□□□ -1.22
USP28-206ENST00000538224 TAB2Q9NYJ8 693 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 ATF5Q9Y2D1 282 aaPredicted RBP7.41□□□□□ -1.22
USP28-206ENST00000538224 PCDHA1Q9Y5I3 950 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 FER1L6Q2WGJ9 1857 aa7.41□□□□□ -1.22
USP28-206ENST00000538224 A0A1W2PQJ5 194 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 DDTLA6NHG4 134 aaPredicted RBP7.4□□□□□ -1.22
USP28-206ENST00000538224 SPDYE3A6NKU9 549 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 USP17L10C9JJH3 530 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 SLC37A4O43826 429 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 PPP1R11O60927 126 aaPredicted RBP7.4□□□□□ -1.22
USP28-206ENST00000538224 IPO7O95373 1038 aaKnown RBP7.4□□□□□ -1.22
USP28-206ENST00000538224 TDP2O95551 362 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 BMP3P12645 472 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 CASP14P31944 242 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 MTIF2P46199 727 aaKnown RBP7.4□□□□□ -1.22
USP28-206ENST00000538224 TCP10Q12799 353 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 IKQ13123 557 aaPredicted RBP7.4□□□□□ -1.22
USP28-206ENST00000538224 GRB10Q13322 594 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 UBE2SQ16763 222 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 RSBN1LQ6PCB5 846 aaPredicted RBP7.4□□□□□ -1.22
USP28-206ENST00000538224 ARHGAP27Q6ZUM4 889 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 CLEC10AQ8IUN9 316 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 CCDC65Q8IXS2 484 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 ZNF710Q8N1W2 664 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 TXLNBQ8N3L3 684 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 OGFOD1Q8N543 542 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 TTLL6Q8N841 843 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 MB21D1Q8N884 522 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 EHBP1Q8NDI1 1231 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 SLC16A10Q8TF71 515 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 C7orf43Q8WVR3 580 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 CNOT6LQ96LI5 555 aaKnown RBP7.4□□□□□ -1.22
USP28-206ENST00000538224 FAM20AQ96MK3 541 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 PNMA5Q96PV4 448 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 CSRNP1Q96S65 589 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 FEZ1Q99689 392 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 VPS16Q9H269 839 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 GOPCQ9HD26 462 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 BLOC1S4Q9NUP1 217 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 ARGLU1Q9NWB6 273 aaPredicted RBP7.4□□□□□ -1.22
USP28-206ENST00000538224 ZNF215Q9UL58 517 aaPredicted RBP7.4□□□□□ -1.22
USP28-206ENST00000538224 PCDHA12Q9UN75 941 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 ADGRG1Q9Y653 693 aa7.4□□□□□ -1.22
USP28-206ENST00000538224 PITPNM2Q9BZ72 1349 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 SPDYE2BA6NHP3 402 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 EFCAB8A8MWE9 144 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 F5H6K3 240 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 PIK3CDO00329 1044 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 PES1O00541 588 aaKnown RBP7.39□□□□□ -1.23
USP28-206ENST00000538224 RAD21O60216 631 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 PLA2G6O60733 806 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 GNA14O95837 355 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 NDUFB10O96000 172 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 SPDYE6P0CI01 402 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 CHRNA5P30532 468 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 KRT9P35527 623 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 CYLC1P35663 651 aaPredicted RBP7.39□□□□□ -1.23
USP28-206ENST00000538224 SLC16A2P36021 539 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 SREBF1P36956 1147 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 FXR1P51114 621 aaKnown RBP eCLIP7.39□□□□□ -1.23
USP28-206ENST00000538224 STAT2P52630 851 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 GNG11P61952 73 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 KRT83P78385 493 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 KLRC3Q07444 240 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 DLGAP5Q15398 846 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 MAN2A1Q16706 1144 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 Q4G0T1 1027 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 ARHGAP29Q52LW3 1261 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 CENPPQ6IPU0 288 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 TTBK2Q6IQ55 1244 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 TRIM65Q6PJ69 517 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 PPP4R3CPQ6ZMV5 832 aa7.39□□□□□ -1.23
USP28-206ENST00000538224 TOGARAM2Q6ZUX3 1019 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms