RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 GGCXP38435 758 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 MTIF2P46199 727 aaKnown RBP12.86□□□□□ -0.35
SYNE1-234ENST00000536990 C2orf54Q08AI8 447 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 KIF5AQ12840 1032 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 C15orf52Q6ZUT6 534 aaKnown RBP12.86□□□□□ -0.35
SYNE1-234ENST00000536990 ZNF572Q7Z3I7 529 aaPredicted RBP12.86□□□□□ -0.35
SYNE1-234ENST00000536990 KRT26Q7Z3Y9 468 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 KRT25Q7Z3Z0 450 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 TEX11Q8IYF3 940 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 AENQ8WTP8 325 aaKnown RBP12.86□□□□□ -0.35
SYNE1-234ENST00000536990 SECISBP2LQ93073 1101 aaKnown RBP12.86□□□□□ -0.35
SYNE1-234ENST00000536990 ZFP91Q96JP5 570 aaPredicted RBP12.86□□□□□ -0.35
SYNE1-234ENST00000536990 LRWD1Q9UFC0 647 aa12.86□□□□□ -0.35
SYNE1-234ENST00000536990 NONOQ15233 471 aaKnown RBP eCLIP12.85□□□□□ -0.35
SYNE1-234ENST00000536990 LETM2Q2VYF4 491 aa12.85□□□□□ -0.35
SYNE1-234ENST00000536990 COBLL1Q53SF7 1204 aa12.85□□□□□ -0.35
SYNE1-234ENST00000536990 C16orf86Q6ZW13 317 aa12.85□□□□□ -0.35
SYNE1-234ENST00000536990 MMGT1Q8N4V1 131 aa12.85□□□□□ -0.35
SYNE1-234ENST00000536990 NEDD1Q8NHV4 660 aa12.85□□□□□ -0.35
SYNE1-234ENST00000536990 RPGRQ92834 1020 aaKnown RBP12.85□□□□□ -0.35
SYNE1-234ENST00000536990 TSGA10Q9BZW7 698 aa12.85□□□□□ -0.35
SYNE1-234ENST00000536990 C6orf50Q9HD87 102 aa12.85□□□□□ -0.35
SYNE1-234ENST00000536990 CD209Q9NNX6 404 aa12.85□□□□□ -0.35
SYNE1-234ENST00000536990 SNX12Q9UMY4 172 aa12.85□□□□□ -0.35
SYNE1-234ENST00000536990 SMCO2A6NFE2 343 aa12.85□□□□□ -0.35
SYNE1-234ENST00000536990 CCNT1O60563 726 aaKnown RBP12.85□□□□□ -0.35
SYNE1-234ENST00000536990 OR52Z1P0C646 297 aa12.85□□□□□ -0.35
SYNE1-234ENST00000536990 GNA11P29992 359 aa12.85□□□□□ -0.35
SYNE1-234ENST00000536990 ASIC1P78348 528 aa12.85□□□□□ -0.35
SYNE1-234ENST00000536990 GPSM2P81274 684 aa12.85□□□□□ -0.35
SYNE1-234ENST00000536990 GOLGA6L1Q8N7Z2 621 aa12.85□□□□□ -0.35
SYNE1-234ENST00000536990 KIAA0895Q8NCT3 520 aa12.85□□□□□ -0.35
SYNE1-234ENST00000536990 SMCR8Q8TEV9 937 aaPredicted RBP12.85□□□□□ -0.35
SYNE1-234ENST00000536990 CCDC47Q96A33 483 aaKnown RBP12.85□□□□□ -0.35
SYNE1-234ENST00000536990 RRP36Q96EU6 259 aaKnown RBP12.85□□□□□ -0.35
SYNE1-234ENST00000536990 JADE2Q9NQC1 790 aa12.85□□□□□ -0.35
SYNE1-234ENST00000536990 PLAGL2Q9UPG8 496 aa12.85□□□□□ -0.35
SYNE1-234ENST00000536990 JRKLQ9Y4A0 524 aa12.85□□□□□ -0.35
SYNE1-234ENST00000536990 MYH10P35580 1976 aa12.85□□□□□ -0.35
SYNE1-234ENST00000536990 LTBP4Q8N2S1 1624 aa12.84□□□□□ -0.35
SYNE1-234ENST00000536990 VGLL3A8MV65 326 aa12.84□□□□□ -0.35
SYNE1-234ENST00000536990 UFL1O94874 794 aa12.84□□□□□ -0.35
SYNE1-234ENST00000536990 PPP1R2P41236 205 aa12.84□□□□□ -0.35
SYNE1-234ENST00000536990 ITIH3Q06033 890 aa12.84□□□□□ -0.35
SYNE1-234ENST00000536990 SOGA3Q5TF21 947 aa12.84□□□□□ -0.35
SYNE1-234ENST00000536990 USP17L2Q6R6M4 530 aa12.84□□□□□ -0.35
SYNE1-234ENST00000536990 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.84□□□□□ -0.35
SYNE1-234ENST00000536990 PCMTD1Q96MG8 357 aaPredicted RBP12.84□□□□□ -0.35
SYNE1-234ENST00000536990 MMTAG2Q9BU76 263 aaKnown RBP12.84□□□□□ -0.35
SYNE1-234ENST00000536990 SEMA6BQ9H3T3 888 aa12.84□□□□□ -0.35
SYNE1-234ENST00000536990 VAT1LQ9HCJ6 419 aa12.84□□□□□ -0.35
SYNE1-234ENST00000536990 ARHGAP20Q9P2F6 1191 aa12.84□□□□□ -0.35
SYNE1-234ENST00000536990 SEC63Q9UGP8 760 aaKnown RBP12.84□□□□□ -0.35
SYNE1-234ENST00000536990 SIK3Q9Y2K2 1263 aa12.84□□□□□ -0.35
SYNE1-234ENST00000536990 CAPN6Q9Y6Q1 641 aa12.84□□□□□ -0.35
SYNE1-234ENST00000536990 GPR75-ASB3A0A0A6YYF3 556 aa12.84□□□□□ -0.35
SYNE1-234ENST00000536990 EPHB6O15197 1021 aa12.84□□□□□ -0.35
SYNE1-234ENST00000536990 PPFIA4O75335 1185 aa12.84□□□□□ -0.35
SYNE1-234ENST00000536990 PLCG2P16885 1265 aa12.84□□□□□ -0.35
SYNE1-234ENST00000536990 IQCEQ6IPM2 695 aa12.84□□□□□ -0.35
SYNE1-234ENST00000536990 TRIM58Q8NG06 486 aa12.84□□□□□ -0.35
SYNE1-234ENST00000536990 CCDC42Q96M95 316 aa12.84□□□□□ -0.35
SYNE1-234ENST00000536990 CRACR2AQ9BSW2 395 aa12.84□□□□□ -0.35
SYNE1-234ENST00000536990 SH2D4AQ9H788 454 aa12.84□□□□□ -0.35
SYNE1-234ENST00000536990 RSPH14Q9UHP6 348 aa12.84□□□□□ -0.35
SYNE1-234ENST00000536990 SHOX2O60902 331 aaPredicted RBP12.83□□□□□ -0.35
SYNE1-234ENST00000536990 LCA5LO95447 670 aa12.83□□□□□ -0.35
SYNE1-234ENST00000536990 SPA17Q15506 151 aa12.83□□□□□ -0.35
SYNE1-234ENST00000536990 FKBP15Q5T1M5 1219 aa12.83□□□□□ -0.35
SYNE1-234ENST00000536990 CENPPQ6IPU0 288 aa12.83□□□□□ -0.35
SYNE1-234ENST00000536990 FAM196AQ6ZSG2 479 aa12.83□□□□□ -0.35
SYNE1-234ENST00000536990 NEK8Q86SG6 692 aa12.83□□□□□ -0.35
SYNE1-234ENST00000536990 HPS3Q969F9 1004 aa12.83□□□□□ -0.35
SYNE1-234ENST00000536990 IQCDQ96DY2 449 aa12.83□□□□□ -0.35
SYNE1-234ENST00000536990 FAM184BQ9ULE4 1060 aa12.83□□□□□ -0.35
SYNE1-234ENST00000536990 PCDHA13Q9Y5I0 950 aa12.83□□□□□ -0.35
SYNE1-234ENST00000536990 CDK5RAP2Q96SN8 1893 aa12.83□□□□□ -0.36
SYNE1-234ENST00000536990 TOM1O60784 492 aa12.83□□□□□ -0.36
SYNE1-234ENST00000536990 PRLRP16471 622 aa12.83□□□□□ -0.36
SYNE1-234ENST00000536990 ATP2B4P23634 1241 aa12.83□□□□□ -0.36
SYNE1-234ENST00000536990 EZH2Q15910 746 aaKnown RBP12.83□□□□□ -0.36
SYNE1-234ENST00000536990 CCDC96Q2M329 555 aa12.83□□□□□ -0.36
SYNE1-234ENST00000536990 HDAC7Q8WUI4 952 aa12.83□□□□□ -0.36
SYNE1-234ENST00000536990 MLXIPQ9HAP2 919 aa12.83□□□□□ -0.36
SYNE1-234ENST00000536990 GGA1Q9UJY5 639 aa12.83□□□□□ -0.36
SYNE1-234ENST00000536990 TAF1LQ8IZX4 1826 aa12.83□□□□□ -0.36
SYNE1-234ENST00000536990 SNED1Q8TER0 1413 aa12.83□□□□□ -0.36
SYNE1-234ENST00000536990 PRR5LQ6MZQ0 368 aa12.83□□□□□ -0.36
SYNE1-234ENST00000536990 CEP95Q96GE4 821 aa12.83□□□□□ -0.36
SYNE1-234ENST00000536990 IFIH1Q9BYX4 1025 aaKnown RBP12.83□□□□□ -0.36
SYNE1-234ENST00000536990 USO1O60763 962 aaKnown RBP12.82□□□□□ -0.36
SYNE1-234ENST00000536990 TACC1O75410 805 aa12.82□□□□□ -0.36
SYNE1-234ENST00000536990 SMARCA1P28370 1054 aa12.82□□□□□ -0.36
SYNE1-234ENST00000536990 CORO7P57737 925 aa12.82□□□□□ -0.36
SYNE1-234ENST00000536990 VWA3BQ502W6 1294 aa12.82□□□□□ -0.36
SYNE1-234ENST00000536990 CNNM4Q6P4Q7 775 aa12.82□□□□□ -0.36
SYNE1-234ENST00000536990 SLF2Q8IX21 1173 aa12.82□□□□□ -0.36
SYNE1-234ENST00000536990 RUBCNQ92622 972 aa12.82□□□□□ -0.36
SYNE1-234ENST00000536990 PIGSQ96S52 555 aa12.82□□□□□ -0.36
SYNE1-234ENST00000536990 PLEKHA4Q9H4M7 779 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms