RNA–Protein interactions for RNA: ENST00000536717.5

TNFRSF1A-209, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 2

Gene TNFRSF1A, Length 1,503 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-209ENST00000536717 TRIM43Q96BQ3 446 aaPredicted RBP20.71■□□□□ 0.91
TNFRSF1A-209ENST00000536717 NEK1Q96PY6 1258 aa20.71■□□□□ 0.91
TNFRSF1A-209ENST00000536717 RMDN3Q96TC7 470 aa20.71■□□□□ 0.91
TNFRSF1A-209ENST00000536717 UBE2OQ9C0C9 1292 aaKnown RBP20.71■□□□□ 0.91
TNFRSF1A-209ENST00000536717 PNMA6FA0A0J9YX94 578 aa20.7■□□□□ 0.9
TNFRSF1A-209ENST00000536717 CCDC69A6NI79 296 aa20.7■□□□□ 0.9
TNFRSF1A-209ENST00000536717 B4DLN1 442 aa20.7■□□□□ 0.9
TNFRSF1A-209ENST00000536717 EPB41L2O43491 1005 aaKnown RBP20.7■□□□□ 0.9
TNFRSF1A-209ENST00000536717 CLTBP09497 229 aa20.7■□□□□ 0.9
TNFRSF1A-209ENST00000536717 RXRAP19793 462 aa20.7■□□□□ 0.9
TNFRSF1A-209ENST00000536717 CDK7P50613 346 aa20.7■□□□□ 0.9
TNFRSF1A-209ENST00000536717 MRPL12P52815 198 aaKnown RBP20.7■□□□□ 0.9
TNFRSF1A-209ENST00000536717 TOX2Q96NM4 488 aa20.7■□□□□ 0.9
TNFRSF1A-209ENST00000536717 SPZ1Q9BXG8 430 aa20.7■□□□□ 0.9
TNFRSF1A-209ENST00000536717 KIF5BP33176 963 aa20.69■□□□□ 0.9
TNFRSF1A-209ENST00000536717 FAAP100Q0VG06 881 aa20.69■□□□□ 0.9
TNFRSF1A-209ENST00000536717 CXCL17Q6UXB2 119 aa20.69■□□□□ 0.9
TNFRSF1A-209ENST00000536717 SGMS1Q86VZ5 419 aa20.69■□□□□ 0.9
TNFRSF1A-209ENST00000536717 TDHQ8IZJ6 230 aa20.69■□□□□ 0.9
TNFRSF1A-209ENST00000536717 SCFD2Q8WU76 684 aa20.69■□□□□ 0.9
TNFRSF1A-209ENST00000536717 LBHD1Q9BQE6 289 aaPredicted RBP20.69■□□□□ 0.9
TNFRSF1A-209ENST00000536717 MAP3K20Q9NYL2 800 aaKnown RBP20.69■□□□□ 0.9
TNFRSF1A-209ENST00000536717 A0A0U1RQG5 324 aaPredicted RBP20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 ARIH2O95376 493 aa20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 PLEKHA8P1O95397 391 aa20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 ITGB8P26012 769 aa20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 SMARCA1P28370 1054 aa20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 EXOSC10Q01780 885 aaKnown RBP20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 PPP2R5BQ15173 497 aa20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 RAB11FIP4Q86YS3 637 aa20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 PIBF1Q8WXW3 757 aa20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 VTI1AQ96AJ9 217 aa20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 TCEANC2Q96MN5 208 aa20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 IWS1Q96ST2 819 aa20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 PXMP2Q9NR77 195 aa20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 ARVCFO00192 962 aa20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 SOX1O00570 391 aaPredicted RBP20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 EIF2AK2P19525 551 aaKnown RBP20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 HOXA13P31271 388 aaPredicted RBP20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 TRAF1Q13077 416 aa20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 ARHGEF16Q5VV41 709 aa20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 SRBD1Q8N5C6 995 aaKnown RBP20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 SAMD3Q8N6K7 520 aa20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 COPS5Q92905 334 aa20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 SLC12A7Q9Y666 1083 aa20.68■□□□□ 0.9
TNFRSF1A-209ENST00000536717 GRIN2DO15399 1336 aa20.67■□□□□ 0.9
TNFRSF1A-209ENST00000536717 MROH7Q68CQ1 1323 aa20.67■□□□□ 0.9
TNFRSF1A-209ENST00000536717 KIAA0355O15063 1070 aa20.67■□□□□ 0.9
TNFRSF1A-209ENST00000536717 NKRFO15226 690 aaKnown RBP eCLIP20.67■□□□□ 0.9
TNFRSF1A-209ENST00000536717 ZEB2O60315 1214 aa20.67■□□□□ 0.9
TNFRSF1A-209ENST00000536717 CALM1P0DP23 149 aa20.67■□□□□ 0.9
TNFRSF1A-209ENST00000536717 CALM2P0DP24 149 aa20.67■□□□□ 0.9
TNFRSF1A-209ENST00000536717 CALM3P0DP25 149 aa20.67■□□□□ 0.9
TNFRSF1A-209ENST00000536717 STXBP2Q15833 593 aa20.67■□□□□ 0.9
TNFRSF1A-209ENST00000536717 CCDC62Q6P9F0 684 aa20.67■□□□□ 0.9
TNFRSF1A-209ENST00000536717 DHX32Q7L7V1 743 aaKnown RBP20.67■□□□□ 0.9
TNFRSF1A-209ENST00000536717 CMTR1Q8N1G2 835 aaKnown RBP20.67■□□□□ 0.9
TNFRSF1A-209ENST00000536717 OR6J1Q8NGC5 347 aa20.67■□□□□ 0.9
TNFRSF1A-209ENST00000536717 BADQ92934 168 aa20.67■□□□□ 0.9
TNFRSF1A-209ENST00000536717 KCNB2Q92953 911 aa20.67■□□□□ 0.9
TNFRSF1A-209ENST00000536717 DCDC2CA8MYV0 355 aa20.66■□□□□ 0.9
TNFRSF1A-209ENST00000536717 CABYRO75952 493 aa20.66■□□□□ 0.9
TNFRSF1A-209ENST00000536717 NR3C2P08235 984 aa20.66■□□□□ 0.9
TNFRSF1A-209ENST00000536717 TXNP10599 105 aaKnown RBP20.66■□□□□ 0.9
TNFRSF1A-209ENST00000536717 GNAQP50148 359 aa20.66■□□□□ 0.9
TNFRSF1A-209ENST00000536717 KRT32Q14532 448 aa20.66■□□□□ 0.9
TNFRSF1A-209ENST00000536717 TTLL4Q14679 1199 aa20.66■□□□□ 0.9
TNFRSF1A-209ENST00000536717 SEPT14Q6ZU15 432 aa20.66■□□□□ 0.9
TNFRSF1A-209ENST00000536717 SLC43A3Q8NBI5 491 aa20.66■□□□□ 0.9
TNFRSF1A-209ENST00000536717 LZTS2Q9BRK4 669 aa20.66■□□□□ 0.9
TNFRSF1A-209ENST00000536717 PDCD2LQ9BRP1 358 aa20.66■□□□□ 0.9
TNFRSF1A-209ENST00000536717 USP26Q9BXU7 913 aa20.66■□□□□ 0.9
TNFRSF1A-209ENST00000536717 TMEM39AQ9NV64 488 aa20.66■□□□□ 0.9
TNFRSF1A-209ENST00000536717 DOCK5Q9H7D0 1870 aa20.65■□□□□ 0.9
TNFRSF1A-209ENST00000536717 HSPA4P34932 840 aa20.65■□□□□ 0.9
TNFRSF1A-209ENST00000536717 APOA5Q6Q788 366 aa20.65■□□□□ 0.9
TNFRSF1A-209ENST00000536717 MICU3Q86XE3 530 aa20.65■□□□□ 0.9
TNFRSF1A-209ENST00000536717 FAM126BQ8IXS8 530 aa20.65■□□□□ 0.9
TNFRSF1A-209ENST00000536717 FANCBQ8NB91 859 aa20.65■□□□□ 0.9
TNFRSF1A-209ENST00000536717 RRP36Q96EU6 259 aaKnown RBP20.65■□□□□ 0.9
TNFRSF1A-209ENST00000536717 TBX21Q9UL17 535 aa20.65■□□□□ 0.9
TNFRSF1A-209ENST00000536717 GCOM1H8Y6P7 765 aaPredicted RBP20.64■□□□□ 0.9
TNFRSF1A-209ENST00000536717 SEC24BO95487 1268 aa20.64■□□□□ 0.9
TNFRSF1A-209ENST00000536717 POLR2MP0CAP2 368 aa20.64■□□□□ 0.9
TNFRSF1A-209ENST00000536717 CPT1AP50416 773 aa20.64■□□□□ 0.9
TNFRSF1A-209ENST00000536717 ITGA7Q13683 1181 aa20.64■□□□□ 0.9
TNFRSF1A-209ENST00000536717 LRIT3Q3SXY7 679 aa20.64■□□□□ 0.9
TNFRSF1A-209ENST00000536717 LRCH3Q96II8 777 aa20.64■□□□□ 0.9
TNFRSF1A-209ENST00000536717 EIF3JO75822 258 aaKnown RBP20.63■□□□□ 0.89
TNFRSF1A-209ENST00000536717 PSMC6P62333 389 aa20.63■□□□□ 0.89
TNFRSF1A-209ENST00000536717 PURAQ00577 322 aaKnown RBP20.63■□□□□ 0.89
TNFRSF1A-209ENST00000536717 PGM5Q15124 567 aa20.63■□□□□ 0.89
TNFRSF1A-209ENST00000536717 TMTC3Q6ZXV5 915 aa20.63■□□□□ 0.89
TNFRSF1A-209ENST00000536717 IL31RAQ8NI17 732 aa20.63■□□□□ 0.89
TNFRSF1A-209ENST00000536717 BRPF3Q9ULD4 1205 aa20.63■□□□□ 0.89
TNFRSF1A-209ENST00000536717 SNX14Q9Y5W7 946 aa20.63■□□□□ 0.89
TNFRSF1A-209ENST00000536717 A6NJR5 290 aa20.63■□□□□ 0.89
TNFRSF1A-209ENST00000536717 RGS20O76081 388 aa20.63■□□□□ 0.89
TNFRSF1A-209ENST00000536717 CD4P01730 458 aa20.63■□□□□ 0.89
TNFRSF1A-209ENST00000536717 RAG1P15918 1043 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms