RNA–Protein interactions for RNA: ENST00000533733.5

ATM-222, Transcript of ATM serine/threonine kinase, human

TSL 1 (best)

Gene ATM, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATM-222	ENST00000533733	PRKCSH	P14314	528 aa	Predicted RBP	13.36	□□□□□ -0.27
ATM-222	ENST00000533733	TXK	P42681	527 aa		13.36	□□□□□ -0.27
ATM-222	ENST00000533733	USP11	P51784	963 aa		13.36	□□□□□ -0.27
ATM-222	ENST00000533733	CLCN6	P51797	869 aa		13.36	□□□□□ -0.27
ATM-222	ENST00000533733	ERVK-24	P63145	666 aa		13.36	□□□□□ -0.27
ATM-222	ENST00000533733	DMTN	Q08495	405 aa		13.36	□□□□□ -0.27
ATM-222	ENST00000533733	GRB10	Q13322	594 aa		13.36	□□□□□ -0.27
ATM-222	ENST00000533733	AP3B2	Q13367	1082 aa		13.36	□□□□□ -0.27
ATM-222	ENST00000533733	TMEM119	Q4V9L6	283 aa		13.36	□□□□□ -0.27
ATM-222	ENST00000533733	CCDC84	Q86UT8	332 aa	Predicted RBP	13.36	□□□□□ -0.27
ATM-222	ENST00000533733	ADGRF4	Q8IZF3	695 aa		13.36	□□□□□ -0.27
ATM-222	ENST00000533733	TXLNB	Q8N3L3	684 aa		13.36	□□□□□ -0.27
ATM-222	ENST00000533733	KCTD17	Q8N5Z5	321 aa		13.36	□□□□□ -0.27
ATM-222	ENST00000533733	RAD54L	Q92698	747 aa		13.36	□□□□□ -0.27
ATM-222	ENST00000533733	CNOT6L	Q96LI5	555 aa	Known RBP	13.36	□□□□□ -0.27
ATM-222	ENST00000533733	TSG101	Q99816	390 aa		13.36	□□□□□ -0.27
ATM-222	ENST00000533733	EDEM3	Q9BZQ6	932 aa		13.36	□□□□□ -0.27
ATM-222	ENST00000533733	LZTFL1	Q9NQ48	299 aa		13.36	□□□□□ -0.27
ATM-222	ENST00000533733	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.36	□□□□□ -0.27
ATM-222	ENST00000533733	MAPK8IP1	Q9UQF2	711 aa		13.36	□□□□□ -0.27
ATM-222	ENST00000533733	PSME4	Q14997	1843 aa		13.35	□□□□□ -0.27
ATM-222	ENST00000533733	FRMPD2	Q68DX3	1309 aa	Predicted RBP	13.35	□□□□□ -0.27
ATM-222	ENST00000533733	TTC26	A0AVF1	554 aa		13.35	□□□□□ -0.27
ATM-222	ENST00000533733	SPDYE4	A6NLX3	237 aa		13.35	□□□□□ -0.27
ATM-222	ENST00000533733	RIMBP2	O15034	1052 aa		13.35	□□□□□ -0.27
ATM-222	ENST00000533733	MTIF2	P46199	727 aa	Known RBP	13.35	□□□□□ -0.27
ATM-222	ENST00000533733	TBC1D8B	Q0IIM8	1120 aa		13.35	□□□□□ -0.27
ATM-222	ENST00000533733	TRAF1	Q13077	416 aa		13.35	□□□□□ -0.27
ATM-222	ENST00000533733	BRD3	Q15059	726 aa		13.35	□□□□□ -0.27
ATM-222	ENST00000533733	ZNF569	Q5MCW4	686 aa		13.35	□□□□□ -0.27
ATM-222	ENST00000533733	CDC42EP5	Q6NZY7	148 aa		13.35	□□□□□ -0.27
ATM-222	ENST00000533733	LRRC47	Q8N1G4	583 aa	Known RBP	13.35	□□□□□ -0.27
ATM-222	ENST00000533733	CERS5	Q8N5B7	392 aa		13.35	□□□□□ -0.27
ATM-222	ENST00000533733	ARID3A	Q99856	593 aa		13.35	□□□□□ -0.27
ATM-222	ENST00000533733	IDI2	Q9BXS1	227 aa		13.35	□□□□□ -0.27
ATM-222	ENST00000533733	TTYH3	Q9C0H2	523 aa		13.35	□□□□□ -0.27
ATM-222	ENST00000533733	CPVL	Q9H3G5	476 aa		13.35	□□□□□ -0.27
ATM-222	ENST00000533733	KANSL2	Q9H9L4	492 aa		13.35	□□□□□ -0.27
ATM-222	ENST00000533733	ADAMTSL1	Q8N6G6	1762 aa		13.35	□□□□□ -0.27
ATM-222	ENST00000533733	CCDC151	A5D8V7	595 aa		13.34	□□□□□ -0.27
ATM-222	ENST00000533733	KRT86	O43790	486 aa		13.34	□□□□□ -0.27
ATM-222	ENST00000533733	ZRANB2	O95218	330 aa	Known RBP eCLIP	13.34	□□□□□ -0.27
ATM-222	ENST00000533733	TRIM21	P19474	475 aa	Known RBP	13.34	□□□□□ -0.27
ATM-222	ENST00000533733	PMS1	P54277	932 aa	Known RBP	13.34	□□□□□ -0.27
ATM-222	ENST00000533733	STK4	Q13043	487 aa		13.34	□□□□□ -0.27
ATM-222	ENST00000533733	KIF4B	Q2VIQ3	1234 aa		13.34	□□□□□ -0.27
ATM-222	ENST00000533733	STRIP1	Q5VSL9	837 aa		13.34	□□□□□ -0.27
ATM-222	ENST00000533733	APOBEC3H	Q6NTF7	200 aa	Known RBP	13.34	□□□□□ -0.27
ATM-222	ENST00000533733	SLC51A	Q86UW1	340 aa		13.34	□□□□□ -0.27
ATM-222	ENST00000533733	SNX29	Q8TEQ0	813 aa		13.34	□□□□□ -0.27
ATM-222	ENST00000533733	COA7	Q96BR5	231 aa		13.34	□□□□□ -0.27
ATM-222	ENST00000533733	RPGRIP1	Q96KN7	1286 aa		13.34	□□□□□ -0.27
ATM-222	ENST00000533733	NOC4L	Q9BVI4	516 aa	Known RBP	13.34	□□□□□ -0.27
ATM-222	ENST00000533733	TSGA10	Q9BZW7	698 aa		13.34	□□□□□ -0.27
ATM-222	ENST00000533733	DDX4	Q9NQI0	724 aa	Known RBP	13.34	□□□□□ -0.27
ATM-222	ENST00000533733	BLOC1S4	Q9NUP1	217 aa		13.34	□□□□□ -0.27
ATM-222	ENST00000533733	PI4KB	Q9UBF8	816 aa		13.34	□□□□□ -0.27
ATM-222	ENST00000533733	DDX25	Q9UHL0	483 aa	Known RBP	13.34	□□□□□ -0.27
ATM-222	ENST00000533733	CYP3A7-CYP3A51P	A0A087WV96	503 aa		13.33	□□□□□ -0.27
ATM-222	ENST00000533733	EIF3CL	B5ME19	914 aa	Known RBP	13.33	□□□□□ -0.27
ATM-222	ENST00000533733	ZSCAN20	P17040	1043 aa	Predicted RBP	13.33	□□□□□ -0.27
ATM-222	ENST00000533733	CYP3A7	P24462	503 aa		13.33	□□□□□ -0.27
ATM-222	ENST00000533733	HNRNPH3	P31942	346 aa	Known RBP	13.33	□□□□□ -0.27
ATM-222	ENST00000533733	CRK	P46108	304 aa		13.33	□□□□□ -0.27
ATM-222	ENST00000533733	CHMP4BP1	P59074	171 aa		13.33	□□□□□ -0.27
ATM-222	ENST00000533733	MAN2A1	Q16706	1144 aa		13.33	□□□□□ -0.27
ATM-222	ENST00000533733	CCDC96	Q2M329	555 aa		13.33	□□□□□ -0.27
ATM-222	ENST00000533733	ANKRD40	Q6AI12	368 aa		13.33	□□□□□ -0.27
ATM-222	ENST00000533733	SLFN12	Q8IYM2	578 aa		13.33	□□□□□ -0.27
ATM-222	ENST00000533733	MSL3	Q8N5Y2	521 aa	Known RBP	13.33	□□□□□ -0.27
ATM-222	ENST00000533733	LRRC15	Q8TF66	581 aa		13.33	□□□□□ -0.27
ATM-222	ENST00000533733	HNRNPLL	Q8WVV9	542 aa	Known RBP	13.33	□□□□□ -0.27
ATM-222	ENST00000533733	PNMA5	Q96PV4	448 aa		13.33	□□□□□ -0.27
ATM-222	ENST00000533733	EIF3C	Q99613	913 aa	Known RBP	13.33	□□□□□ -0.27
ATM-222	ENST00000533733	GBP3	Q9H0R5	595 aa		13.33	□□□□□ -0.27
ATM-222	ENST00000533733	PSTPIP2	Q9H939	334 aa		13.33	□□□□□ -0.27
ATM-222	ENST00000533733	GPCPD1	Q9NPB8	672 aa		13.33	□□□□□ -0.27
ATM-222	ENST00000533733	TMEM260	Q9NX78	707 aa		13.33	□□□□□ -0.27
ATM-222	ENST00000533733	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.33	□□□□□ -0.27
ATM-222	ENST00000533733	PSMD14	O00487	310 aa		13.33	□□□□□ -0.28
ATM-222	ENST00000533733	PES1	O00541	588 aa	Known RBP	13.33	□□□□□ -0.28
ATM-222	ENST00000533733	TBX3	O15119	743 aa		13.33	□□□□□ -0.28
ATM-222	ENST00000533733	MARCH6	O60337	910 aa		13.33	□□□□□ -0.28
ATM-222	ENST00000533733	ERLIN1	O75477	346 aa		13.33	□□□□□ -0.28
ATM-222	ENST00000533733	TRIM37	O94972	964 aa		13.33	□□□□□ -0.28
ATM-222	ENST00000533733	GNA14	O95837	355 aa		13.33	□□□□□ -0.28
ATM-222	ENST00000533733	TNNI2	P48788	182 aa		13.33	□□□□□ -0.28
ATM-222	ENST00000533733	EHHADH	Q08426	723 aa		13.33	□□□□□ -0.28
ATM-222	ENST00000533733	STYK1	Q6J9G0	422 aa		13.33	□□□□□ -0.28
ATM-222	ENST00000533733	KIAA0895	Q8NCT3	520 aa		13.33	□□□□□ -0.28
ATM-222	ENST00000533733	AKT1S1	Q96B36	256 aa		13.33	□□□□□ -0.28
ATM-222	ENST00000533733	MBOAT7	Q96N66	472 aa		13.33	□□□□□ -0.28
ATM-222	ENST00000533733	PLIN2	Q99541	437 aa		13.33	□□□□□ -0.28
ATM-222	ENST00000533733	TRIM34	Q9BYJ4	488 aa		13.33	□□□□□ -0.28
ATM-222	ENST00000533733	NUCKS1	Q9H1E3	243 aa	Known RBP	13.33	□□□□□ -0.28
ATM-222	ENST00000533733	ARFGAP3	Q9NP61	516 aa		13.33	□□□□□ -0.28
ATM-222	ENST00000533733	SERPINA10	Q9UK55	444 aa		13.33	□□□□□ -0.28
ATM-222	ENST00000533733	KIF13B	Q9NQT8	1826 aa		13.32	□□□□□ -0.28
ATM-222	ENST00000533733	LOXHD1	Q8IVV2	1947 aa		13.32	□□□□□ -0.28
ATM-222	ENST00000533733	ANO9	A1A5B4	782 aa		13.32	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms