RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 TIMM13Q9Y5L4 95 aaPredicted RBP5.67□□□□□ -1.5
CD44-233ENST00000531141 ZNF503-AS2A6NEH8 195 aa5.66□□□□□ -1.5
CD44-233ENST00000531141 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.66□□□□□ -1.5
CD44-233ENST00000531141 AQP7O14520 342 aa5.66□□□□□ -1.5
CD44-233ENST00000531141 ENPP3O14638 875 aa5.66□□□□□ -1.5
CD44-233ENST00000531141 NAT1P18440 290 aa5.66□□□□□ -1.5
CD44-233ENST00000531141 TACR1P25103 407 aa5.66□□□□□ -1.5
CD44-233ENST00000531141 GPR85P60893 370 aa5.66□□□□□ -1.5
CD44-233ENST00000531141 TMEM62Q0P6H9 643 aa5.66□□□□□ -1.5
CD44-233ENST00000531141 KIR3DS1Q14943 382 aa5.66□□□□□ -1.5
CD44-233ENST00000531141 TRIM61Q5EBN2 209 aa5.66□□□□□ -1.5
CD44-233ENST00000531141 ADGRF1Q5T601 910 aa5.66□□□□□ -1.5
CD44-233ENST00000531141 BICRALQ6AI39 1079 aa5.66□□□□□ -1.5
CD44-233ENST00000531141 MPZL3Q6UWV2 235 aa5.66□□□□□ -1.5
CD44-233ENST00000531141 NLRP10Q86W26 655 aa5.66□□□□□ -1.5
CD44-233ENST00000531141 MTA3Q9BTC8 594 aa5.66□□□□□ -1.5
CD44-233ENST00000531141 KANSL2Q9H9L4 492 aa5.66□□□□□ -1.5
CD44-233ENST00000531141 NCOA5Q9HCD5 579 aaKnown RBP5.66□□□□□ -1.5
CD44-233ENST00000531141 MARCH2Q9P0N8 246 aa5.66□□□□□ -1.5
CD44-233ENST00000531141 ESYT3A0FGR9 886 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 BLACEA4D250 179 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 OR14I1A6ND48 311 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 H7BY64 318 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 HRKO00198 91 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 ARNTLO00327 626 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 EFCAB14O75071 495 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 CDC45O75419 566 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 MPOP05164 745 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 LCP1P13796 627 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 PDE6BP35913 854 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 GALK1P51570 392 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 LSAMPQ13449 338 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 KIZQ2M2Z5 673 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 LCE1DQ5T752 114 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 OLFML2BQ68BL8 750 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 WWC2Q6AWC2 1192 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 GIMAP6Q6P9H5 292 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 RIOX2Q8IUF8 465 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 SIRT2Q8IXJ6 389 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 IFNL3Q8IZI9 196 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 NETO2Q8NC67 525 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 APPBP2Q92624 585 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 DPF3Q92784 378 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 PCDHA2Q9Y5H9 948 aa5.65□□□□□ -1.5
CD44-233ENST00000531141 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.65□□□□□ -1.5
CD44-233ENST00000531141 ABLIM1O14639 778 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 PLD2O14939 933 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 CYBBP04839 570 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 DBHP09172 617 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 GLI4P10075 376 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 BCL6P41182 706 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 NR1I3Q14994 352 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 MROH9Q5TGP6 573 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 KCNT2Q6UVM3 1135 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 LBX2Q6XYB7 198 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 C16orf86Q6ZW13 317 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 DCP2Q8IU60 420 aaKnown RBP5.64□□□□□ -1.51
CD44-233ENST00000531141 TEX2Q8IWB9 1127 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 NLGN1Q8N2Q7 840 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 GSTCDQ8NEC7 633 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 LIN37Q96GY3 246 aaPredicted RBP5.64□□□□□ -1.51
CD44-233ENST00000531141 TMEM169Q96HH4 297 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 ALG1Q9BT22 464 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 EPB41L4BQ9H329 900 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 FANCLQ9NW38 375 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 BTG4Q9NY30 223 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 NDOR1Q9UHB4 597 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 FBXL7Q9UJT9 491 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 COA3Q9Y2R0 106 aaPredicted RBP5.64□□□□□ -1.51
CD44-233ENST00000531141 X6R8D5 127 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 ASXL2Q76L83 1435 aa5.64□□□□□ -1.51
CD44-233ENST00000531141 C22orf46C9J442 243 aa5.63□□□□□ -1.51
CD44-233ENST00000531141 KCNQ2O43526 872 aa5.63□□□□□ -1.51
CD44-233ENST00000531141 FUCA1P04066 466 aa5.63□□□□□ -1.51
CD44-233ENST00000531141 APPP05067 770 aa5.63□□□□□ -1.51
CD44-233ENST00000531141 FPR2P25090 351 aa5.63□□□□□ -1.51
CD44-233ENST00000531141 GRK2P25098 689 aa5.63□□□□□ -1.51
CD44-233ENST00000531141 GRK3P35626 688 aa5.63□□□□□ -1.51
CD44-233ENST00000531141 TCEA2Q15560 299 aa5.63□□□□□ -1.51
CD44-233ENST00000531141 FNDC3BQ53EP0 1204 aaKnown RBP5.63□□□□□ -1.51
CD44-233ENST00000531141 PAQR3Q6TCH7 311 aa5.63□□□□□ -1.51
CD44-233ENST00000531141 MTDHQ86UE4 582 aaKnown RBP5.63□□□□□ -1.51
CD44-233ENST00000531141 PLEKHO2Q8TD55 490 aa5.63□□□□□ -1.51
CD44-233ENST00000531141 USP33Q8TEY7 942 aa5.63□□□□□ -1.51
CD44-233ENST00000531141 TRMT2BQ96GJ1 504 aaKnown RBP5.63□□□□□ -1.51
CD44-233ENST00000531141 CHAMP1Q96JM3 812 aa5.63□□□□□ -1.51
CD44-233ENST00000531141 SLC52A2Q9HAB3 445 aa5.63□□□□□ -1.51
CD44-233ENST00000531141 CLDND1Q9NY35 253 aa5.63□□□□□ -1.51
CD44-233ENST00000531141 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.63□□□□□ -1.51
CD44-233ENST00000531141 FBLN5Q9UBX5 448 aa5.63□□□□□ -1.51
CD44-233ENST00000531141 NUDT5Q9UKK9 219 aa5.63□□□□□ -1.51
CD44-233ENST00000531141 TLDC2A0PJX2 215 aa5.62□□□□□ -1.51
CD44-233ENST00000531141 LRRC10BA6NIK2 292 aa5.62□□□□□ -1.51
CD44-233ENST00000531141 NUDT19A8MXV4 375 aa5.62□□□□□ -1.51
CD44-233ENST00000531141 PAX4O43316 350 aa5.62□□□□□ -1.51
CD44-233ENST00000531141 MSCO60682 206 aa5.62□□□□□ -1.51
CD44-233ENST00000531141 ASMTLO95671 621 aa5.62□□□□□ -1.51
CD44-233ENST00000531141 YBX3P16989 372 aaKnown RBP eCLIP5.62□□□□□ -1.51
CD44-233ENST00000531141 TXKP42681 527 aa5.62□□□□□ -1.51
CD44-233ENST00000531141 SLC6A11P48066 632 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms