RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ZNF526Q8TF50 670 aaPredicted RBP6.36□□□□□ -1.39
CD44-220ENST00000525688 LEO1Q8WVC0 666 aaPredicted RBP6.36□□□□□ -1.39
CD44-220ENST00000525688 HRASLS5Q96KN8 279 aa6.36□□□□□ -1.39
CD44-220ENST00000525688 RIPOR2Q9Y4F9 1068 aa6.36□□□□□ -1.39
CD44-220ENST00000525688 PCDHA8Q9Y5H6 950 aa6.36□□□□□ -1.39
CD44-220ENST00000525688 WIZO95785 1651 aa6.36□□□□□ -1.39
CD44-220ENST00000525688 DYRK3O43781 588 aa6.35□□□□□ -1.39
CD44-220ENST00000525688 PDGFRBP09619 1106 aa6.35□□□□□ -1.39
CD44-220ENST00000525688 LCP1P13796 627 aa6.35□□□□□ -1.39
CD44-220ENST00000525688 EGR3Q06889 387 aa6.35□□□□□ -1.39
CD44-220ENST00000525688 INF2Q27J81 1249 aa6.35□□□□□ -1.39
CD44-220ENST00000525688 KIZQ2M2Z5 673 aa6.35□□□□□ -1.39
CD44-220ENST00000525688 PLEKHG6Q3KR16 790 aa6.35□□□□□ -1.39
CD44-220ENST00000525688 MBLAC2Q68D91 279 aa6.35□□□□□ -1.39
CD44-220ENST00000525688 PKN3Q6P5Z2 889 aa6.35□□□□□ -1.39
CD44-220ENST00000525688 ABHD17CQ6PCB6 329 aa6.35□□□□□ -1.39
CD44-220ENST00000525688 STRA8Q7Z7C7 330 aa6.35□□□□□ -1.39
CD44-220ENST00000525688 DDX53Q86TM3 631 aaKnown RBP6.35□□□□□ -1.39
CD44-220ENST00000525688 TMEM52Q8NDY8 209 aa6.35□□□□□ -1.39
CD44-220ENST00000525688 PCDH19Q8TAB3 1148 aa6.35□□□□□ -1.39
CD44-220ENST00000525688 MISP3Q96FF7 219 aa6.35□□□□□ -1.39
CD44-220ENST00000525688 FCRL2Q96LA5 508 aaPredicted RBP6.35□□□□□ -1.39
CD44-220ENST00000525688 CDADC1Q9BWV3 514 aa6.35□□□□□ -1.39
CD44-220ENST00000525688 IRF2BPLQ9H1B7 796 aa6.35□□□□□ -1.39
CD44-220ENST00000525688 HOMER2Q9NSB8 354 aa6.35□□□□□ -1.39
CD44-220ENST00000525688 ERVK13-1Q9NX77 482 aa6.35□□□□□ -1.39
CD44-220ENST00000525688 FKTNO75072 461 aa6.34□□□□□ -1.39
CD44-220ENST00000525688 CEBPAP49715 358 aaPredicted RBP6.34□□□□□ -1.39
CD44-220ENST00000525688 PAK1Q13153 545 aa6.34□□□□□ -1.39
CD44-220ENST00000525688 SEPT7Q16181 437 aaKnown RBP6.34□□□□□ -1.39
CD44-220ENST00000525688 MSMPQ1L6U9 139 aa6.34□□□□□ -1.39
CD44-220ENST00000525688 WWC2Q6AWC2 1192 aa6.34□□□□□ -1.39
CD44-220ENST00000525688 WNK4Q96J92 1243 aa6.34□□□□□ -1.39
CD44-220ENST00000525688 ALG1Q9BT22 464 aa6.34□□□□□ -1.39
CD44-220ENST00000525688 CELF4Q9BZC1 486 aaKnown RBP6.34□□□□□ -1.39
CD44-220ENST00000525688 LMCD1Q9NZU5 365 aa6.34□□□□□ -1.39
CD44-220ENST00000525688 SAMD15Q9P1V8 674 aa6.34□□□□□ -1.39
CD44-220ENST00000525688 KPNA6O60684 536 aa6.33□□□□□ -1.4
CD44-220ENST00000525688 CKMP06732 381 aa6.33□□□□□ -1.4
CD44-220ENST00000525688 RPL10P27635 214 aaKnown RBP6.33□□□□□ -1.4
CD44-220ENST00000525688 GTF2A2P52657 109 aa6.33□□□□□ -1.4
CD44-220ENST00000525688 EXOSC10Q01780 885 aaKnown RBP6.33□□□□□ -1.4
CD44-220ENST00000525688 AOC3Q16853 763 aa6.33□□□□□ -1.4
CD44-220ENST00000525688 PIK3R6Q5UE93 754 aa6.33□□□□□ -1.4
CD44-220ENST00000525688 HLA-DQA1Q5Y7H0 255 aa6.33□□□□□ -1.4
CD44-220ENST00000525688 ZPBP2Q6X784 338 aa6.33□□□□□ -1.4
CD44-220ENST00000525688 WAPLQ7Z5K2 1190 aa6.33□□□□□ -1.4
CD44-220ENST00000525688 CPNE8Q86YQ8 564 aa6.33□□□□□ -1.4
CD44-220ENST00000525688 ZC3H7AQ8IWR0 971 aaKnown RBP6.33□□□□□ -1.4
CD44-220ENST00000525688 NAT16Q8N8M0 369 aa6.33□□□□□ -1.4
CD44-220ENST00000525688 SPOCK3Q9BQ16 436 aa6.33□□□□□ -1.4
CD44-220ENST00000525688 CDIP1Q9H305 208 aa6.33□□□□□ -1.4
CD44-220ENST00000525688 TIMM13Q9Y5L4 95 aaPredicted RBP6.33□□□□□ -1.4
CD44-220ENST00000525688 PHLDB1Q86UU1 1377 aa6.32□□□□□ -1.4
CD44-220ENST00000525688 C7orf72A4D263 438 aa6.32□□□□□ -1.4
CD44-220ENST00000525688 MSTNO14793 375 aa6.32□□□□□ -1.4
CD44-220ENST00000525688 MYO1BO43795 1136 aa6.32□□□□□ -1.4
CD44-220ENST00000525688 BRINP1O60477 761 aa6.32□□□□□ -1.4
CD44-220ENST00000525688 SOD2P04179 222 aa6.32□□□□□ -1.4
CD44-220ENST00000525688 BPIP17213 487 aa6.32□□□□□ -1.4
CD44-220ENST00000525688 HOXA10P31260 410 aaPredicted RBP6.32□□□□□ -1.4
CD44-220ENST00000525688 LSAMPQ13449 338 aa6.32□□□□□ -1.4
CD44-220ENST00000525688 NECAB2Q7Z6G3 386 aa6.32□□□□□ -1.4
CD44-220ENST00000525688 FERMT3Q86UX7 667 aa6.32□□□□□ -1.4
CD44-220ENST00000525688 STK11IPQ8N1F8 1099 aa6.32□□□□□ -1.4
CD44-220ENST00000525688 Q8N1Y9 231 aa6.32□□□□□ -1.4
CD44-220ENST00000525688 ATL2Q8NHH9 583 aa6.32□□□□□ -1.4
CD44-220ENST00000525688 G6PC3Q9BUM1 346 aa6.32□□□□□ -1.4
CD44-220ENST00000525688 TNFRSF10DQ9UBN6 386 aa6.32□□□□□ -1.4
CD44-220ENST00000525688 ADGRE2Q9UHX3 823 aa6.32□□□□□ -1.4
CD44-220ENST00000525688 PCDHA2Q9Y5H9 948 aa6.32□□□□□ -1.4
CD44-220ENST00000525688 FAM47E-STBD1D6RA91 191 aa6.31□□□□□ -1.4
CD44-220ENST00000525688 CBX4O00257 560 aa6.31□□□□□ -1.4
CD44-220ENST00000525688 ZEB2O60315 1214 aa6.31□□□□□ -1.4
CD44-220ENST00000525688 NPHS1O60500 1241 aa6.31□□□□□ -1.4
CD44-220ENST00000525688 GLRX3O76003 335 aaKnown RBP6.31□□□□□ -1.4
CD44-220ENST00000525688 F2P00734 622 aa6.31□□□□□ -1.4
CD44-220ENST00000525688 EVA1CP58658 441 aa6.31□□□□□ -1.4
CD44-220ENST00000525688 RPL11P62913 178 aaKnown RBP6.31□□□□□ -1.4
CD44-220ENST00000525688 STRN3Q13033 797 aa6.31□□□□□ -1.4
CD44-220ENST00000525688 LAPTM5Q13571 262 aa6.31□□□□□ -1.4
CD44-220ENST00000525688 RNF219Q5W0B1 726 aaPredicted RBP6.31□□□□□ -1.4
CD44-220ENST00000525688 C16orf59Q7L2K0 433 aa6.31□□□□□ -1.4
CD44-220ENST00000525688 IGSF22Q8N9C0 903 aa6.31□□□□□ -1.4
CD44-220ENST00000525688 NLGN2Q8NFZ4 835 aa6.31□□□□□ -1.4
CD44-220ENST00000525688 OR2W6PQ8NHA6 318 aa6.31□□□□□ -1.4
CD44-220ENST00000525688 LINC01599Q8WXQ3 324 aa6.31□□□□□ -1.4
CD44-220ENST00000525688 MAP6Q96JE9 813 aa6.31□□□□□ -1.4
CD44-220ENST00000525688 BSDC1Q9NW68 430 aaPredicted RBP6.31□□□□□ -1.4
CD44-220ENST00000525688 KLHL42Q9P2K6 505 aa6.31□□□□□ -1.4
CD44-220ENST00000525688 WASHC2CQ9Y4E1 1318 aa6.3□□□□□ -1.4
CD44-220ENST00000525688 FADS2P1A8MWK0 482 aa6.3□□□□□ -1.4
CD44-220ENST00000525688 H7BY64 318 aa6.3□□□□□ -1.4
CD44-220ENST00000525688 TRAF5O00463 557 aa6.3□□□□□ -1.4
CD44-220ENST00000525688 GSTA4O15217 222 aa6.3□□□□□ -1.4
CD44-220ENST00000525688 GPR39O43194 453 aa6.3□□□□□ -1.4
CD44-220ENST00000525688 TGFB1P01137 390 aa6.3□□□□□ -1.4
CD44-220ENST00000525688 GRK2P25098 689 aa6.3□□□□□ -1.4
CD44-220ENST00000525688 GRK3P35626 688 aa6.3□□□□□ -1.4
CD44-220ENST00000525688 SCNN1BP51168 640 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms