RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, human

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-231	ENST00000515620	RAD9A	Q99638	391 aa		12.48	□□□□□ -0.41
CLDND1-231	ENST00000515620	ZNF287	Q9HBT7	754 aa		12.48	□□□□□ -0.41
CLDND1-231	ENST00000515620	ADD3	Q9UEY8	706 aa	Known RBP	12.48	□□□□□ -0.41
CLDND1-231	ENST00000515620	POTEB3	A0JP26	581 aa		12.47	□□□□□ -0.41
CLDND1-231	ENST00000515620	TSPY3	P0CV98	308 aa		12.47	□□□□□ -0.41
CLDND1-231	ENST00000515620	TSPY8	P0CW00	308 aa		12.47	□□□□□ -0.41
CLDND1-231	ENST00000515620	SELP	P16109	830 aa		12.47	□□□□□ -0.41
CLDND1-231	ENST00000515620	MCC	P23508	829 aa		12.47	□□□□□ -0.41
CLDND1-231	ENST00000515620	TDO2	P48775	406 aa		12.47	□□□□□ -0.41
CLDND1-231	ENST00000515620	ZP2	Q05996	745 aa		12.47	□□□□□ -0.41
CLDND1-231	ENST00000515620	BAAT	Q14032	418 aa	Predicted RBP	12.47	□□□□□ -0.41
CLDND1-231	ENST00000515620	GPNMB	Q14956	572 aa		12.47	□□□□□ -0.41
CLDND1-231	ENST00000515620	TCTN1	Q2MV58	587 aa		12.47	□□□□□ -0.41
CLDND1-231	ENST00000515620	GIMAP6	Q6P9H5	292 aa		12.47	□□□□□ -0.41
CLDND1-231	ENST00000515620	POTEB	Q6S5H4	581 aa		12.47	□□□□□ -0.41
CLDND1-231	ENST00000515620	EP400NL	Q6ZTU2	488 aa		12.47	□□□□□ -0.41
CLDND1-231	ENST00000515620	RASGRP2	Q7LDG7	609 aa		12.47	□□□□□ -0.41
CLDND1-231	ENST00000515620	CAGE1	Q8TC20	777 aa		12.47	□□□□□ -0.41
CLDND1-231	ENST00000515620	NEK9	Q8TD19	979 aa		12.47	□□□□□ -0.41
CLDND1-231	ENST00000515620	COPS5	Q92905	334 aa		12.47	□□□□□ -0.41
CLDND1-231	ENST00000515620	C17orf80	Q9BSJ5	609 aa		12.47	□□□□□ -0.41
CLDND1-231	ENST00000515620	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	12.47	□□□□□ -0.41
CLDND1-231	ENST00000515620	PRR12	Q9ULL5	1215 aa		12.47	□□□□□ -0.41
CLDND1-231	ENST00000515620	WDFY4	Q6ZS81	3184 aa		12.46	□□□□□ -0.41
CLDND1-231	ENST00000515620	ZNF318	Q5VUA4	2279 aa		12.46	□□□□□ -0.41
CLDND1-231	ENST00000515620	RBM47	A0AV96	593 aa	Known RBP	12.46	□□□□□ -0.41
CLDND1-231	ENST00000515620	PTPDC1	A2A3K4	754 aa		12.46	□□□□□ -0.41
CLDND1-231	ENST00000515620		A6NJR5	290 aa		12.46	□□□□□ -0.41
CLDND1-231	ENST00000515620	NFIB	O00712	420 aa		12.46	□□□□□ -0.41
CLDND1-231	ENST00000515620	KPNA6	O60684	536 aa		12.46	□□□□□ -0.41
CLDND1-231	ENST00000515620	DHX38	Q92620	1227 aa	Known RBP	12.46	□□□□□ -0.41
CLDND1-231	ENST00000515620	MRPL38	Q96DV4	380 aa	Known RBP	12.46	□□□□□ -0.41
CLDND1-231	ENST00000515620	CTAGE1	Q96RT6	745 aa		12.46	□□□□□ -0.41
CLDND1-231	ENST00000515620	ABHD14A-ACY1	A0A1B0GW23	586 aa		12.45	□□□□□ -0.42
CLDND1-231	ENST00000515620	NKRF	O15226	690 aa	Known RBP eCLIP	12.45	□□□□□ -0.42
CLDND1-231	ENST00000515620	NBN	O60934	754 aa		12.45	□□□□□ -0.42
CLDND1-231	ENST00000515620	CXCL10	P02778	98 aa		12.45	□□□□□ -0.42
CLDND1-231	ENST00000515620	ICAM1	P05362	532 aa		12.45	□□□□□ -0.42
CLDND1-231	ENST00000515620	PDE4D	Q08499	809 aa		12.45	□□□□□ -0.42
CLDND1-231	ENST00000515620	TIGD5	Q53EQ6	642 aa		12.45	□□□□□ -0.42
CLDND1-231	ENST00000515620	GDF6	Q6KF10	455 aa	Predicted RBP	12.45	□□□□□ -0.42
CLDND1-231	ENST00000515620	SLC30A10	Q6XR72	485 aa		12.45	□□□□□ -0.42
CLDND1-231	ENST00000515620	NEDD1	Q8NHV4	660 aa		12.45	□□□□□ -0.42
CLDND1-231	ENST00000515620	SCFD2	Q8WU76	684 aa		12.45	□□□□□ -0.42
CLDND1-231	ENST00000515620	MFSD14A	Q96MC6	490 aa		12.45	□□□□□ -0.42
CLDND1-231	ENST00000515620	PRKAG3	Q9UGI9	489 aa		12.45	□□□□□ -0.42
CLDND1-231	ENST00000515620	MTMR7	Q9Y216	660 aa		12.45	□□□□□ -0.42
CLDND1-231	ENST00000515620	FAM50B	Q9Y247	325 aa		12.45	□□□□□ -0.42
CLDND1-231	ENST00000515620	C19orf67	A6NJJ6	358 aa		12.44	□□□□□ -0.42
CLDND1-231	ENST00000515620	PLA2G6	O60733	806 aa		12.44	□□□□□ -0.42
CLDND1-231	ENST00000515620	APP	P05067	770 aa		12.44	□□□□□ -0.42
CLDND1-231	ENST00000515620	CALML3	P27482	149 aa		12.44	□□□□□ -0.42
CLDND1-231	ENST00000515620	IRS1	P35568	1242 aa		12.44	□□□□□ -0.42
CLDND1-231	ENST00000515620	TFAP4	Q01664	338 aa		12.44	□□□□□ -0.42
CLDND1-231	ENST00000515620	PTPRO	Q16827	1216 aa		12.44	□□□□□ -0.42
CLDND1-231	ENST00000515620	CCDC96	Q2M329	555 aa		12.44	□□□□□ -0.42
CLDND1-231	ENST00000515620	ADHFE1	Q8IWW8	467 aa		12.44	□□□□□ -0.42
CLDND1-231	ENST00000515620	OSBP2	Q969R2	916 aa		12.44	□□□□□ -0.42
CLDND1-231	ENST00000515620	PABPC5	Q96DU9	382 aa	Known RBP	12.44	□□□□□ -0.42
CLDND1-231	ENST00000515620	CTNNA3	Q9UI47	895 aa		12.44	□□□□□ -0.42
CLDND1-231	ENST00000515620	MUTYH	Q9UIF7	546 aa		12.44	□□□□□ -0.42
CLDND1-231	ENST00000515620	LOC102724159	A0A0B4J2E5	919 aa		12.43	□□□□□ -0.42
CLDND1-231	ENST00000515620	GPAA1	O43292	621 aa		12.43	□□□□□ -0.42
CLDND1-231	ENST00000515620	EFCAB14	O75071	495 aa		12.43	□□□□□ -0.42
CLDND1-231	ENST00000515620	RAB11FIP3	O75154	756 aa		12.43	□□□□□ -0.42
CLDND1-231	ENST00000515620	PARN	O95453	639 aa	Known RBP	12.43	□□□□□ -0.42
CLDND1-231	ENST00000515620	TXN	P10599	105 aa	Known RBP	12.43	□□□□□ -0.42
CLDND1-231	ENST00000515620	CKB	P12277	381 aa		12.43	□□□□□ -0.42
CLDND1-231	ENST00000515620	PDE4B	Q07343	736 aa		12.43	□□□□□ -0.42
CLDND1-231	ENST00000515620	IKBKE	Q14164	716 aa		12.43	□□□□□ -0.42
CLDND1-231	ENST00000515620	PWP2	Q15269	919 aa	Known RBP	12.43	□□□□□ -0.42
CLDND1-231	ENST00000515620	TCEAL5	Q5H9L2	206 aa		12.43	□□□□□ -0.42
CLDND1-231	ENST00000515620	RCSD1	Q6JBY9	416 aa		12.43	□□□□□ -0.42
CLDND1-231	ENST00000515620	BANK1	Q8NDB2	785 aa		12.43	□□□□□ -0.42
CLDND1-231	ENST00000515620	PRSS33	Q8NF86	280 aa		12.43	□□□□□ -0.42
CLDND1-231	ENST00000515620	APPBP2	Q92624	585 aa		12.43	□□□□□ -0.42
CLDND1-231	ENST00000515620	UPF3B	Q9BZI7	483 aa	Known RBP	12.43	□□□□□ -0.42
CLDND1-231	ENST00000515620	STX8	Q9UNK0	236 aa		12.43	□□□□□ -0.42
CLDND1-231	ENST00000515620	INSL6	Q9Y581	213 aa		12.43	□□□□□ -0.42
CLDND1-231	ENST00000515620	TRIP12	Q14669	1992 aa	Predicted RBP	12.42	□□□□□ -0.42
CLDND1-231	ENST00000515620		M0R2C6	588 aa		12.42	□□□□□ -0.42
CLDND1-231	ENST00000515620	ST18	O60284	1047 aa		12.42	□□□□□ -0.42
CLDND1-231	ENST00000515620	HMMR	O75330	724 aa		12.42	□□□□□ -0.42
CLDND1-231	ENST00000515620	ARIH2	O95376	493 aa		12.42	□□□□□ -0.42
CLDND1-231	ENST00000515620	SLC16A2	P36021	539 aa		12.42	□□□□□ -0.42
CLDND1-231	ENST00000515620	RBL2	Q08999	1139 aa		12.42	□□□□□ -0.42
CLDND1-231	ENST00000515620	EPC2	Q52LR7	807 aa		12.42	□□□□□ -0.42
CLDND1-231	ENST00000515620	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	12.42	□□□□□ -0.42
CLDND1-231	ENST00000515620	SESTD1	Q86VW0	696 aa		12.42	□□□□□ -0.42
CLDND1-231	ENST00000515620	MYOCD	Q8IZQ8	938 aa		12.42	□□□□□ -0.42
CLDND1-231	ENST00000515620	PANK1	Q8TE04	598 aa		12.42	□□□□□ -0.42
CLDND1-231	ENST00000515620	AFG1L	Q8WV93	481 aa		12.42	□□□□□ -0.42
CLDND1-231	ENST00000515620	RANBP17	Q9H2T7	1088 aa	Known RBP	12.42	□□□□□ -0.42
CLDND1-231	ENST00000515620	CLDND1	Q9NY35	253 aa		12.42	□□□□□ -0.42
CLDND1-231	ENST00000515620	NMT2	O60551	498 aa		12.41	□□□□□ -0.42
CLDND1-231	ENST00000515620	AMH	P03971	560 aa		12.41	□□□□□ -0.42
CLDND1-231	ENST00000515620	MMP3	P08254	477 aa		12.41	□□□□□ -0.42
CLDND1-231	ENST00000515620	GNAT2	P19087	354 aa		12.41	□□□□□ -0.42
CLDND1-231	ENST00000515620	EDNRB	P24530	442 aa		12.41	□□□□□ -0.42
CLDND1-231	ENST00000515620	PTPN5	P54829	565 aa		12.41	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms