RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 ZSCAN29Q8IWY8 852 aaPredicted RBP16.59■□□□□ 0.25
NUP54-217ENST00000514987 GUF1Q8N442 669 aaKnown RBP16.59■□□□□ 0.25
NUP54-217ENST00000514987 CEP112Q8N8E3 955 aa16.59■□□□□ 0.25
NUP54-217ENST00000514987 SNX29Q8TEQ0 813 aa16.59■□□□□ 0.25
NUP54-217ENST00000514987 RABGGTAQ92696 567 aa16.59■□□□□ 0.25
NUP54-217ENST00000514987 GOLGA1Q92805 767 aa16.59■□□□□ 0.25
NUP54-217ENST00000514987 CNOT6LQ96LI5 555 aaKnown RBP16.59■□□□□ 0.25
NUP54-217ENST00000514987 NT5C3AQ9H0P0 336 aa16.59■□□□□ 0.25
NUP54-217ENST00000514987 EPN1Q9Y6I3 576 aaPredicted RBP16.59■□□□□ 0.25
NUP54-217ENST00000514987 A0A1W2PQJ5 194 aa16.58■□□□□ 0.24
NUP54-217ENST00000514987 TTC26A0AVF1 554 aa16.58■□□□□ 0.24
NUP54-217ENST00000514987 H0YIN7 160 aa16.58■□□□□ 0.24
NUP54-217ENST00000514987 PES1O00541 588 aaKnown RBP16.58■□□□□ 0.24
NUP54-217ENST00000514987 ATP8B1O43520 1251 aa16.58■□□□□ 0.24
NUP54-217ENST00000514987 KRT83P78385 493 aa16.58■□□□□ 0.24
NUP54-217ENST00000514987 ATP2B2Q01814 1243 aa16.58■□□□□ 0.24
NUP54-217ENST00000514987 TBC1D8BQ0IIM8 1120 aa16.58■□□□□ 0.24
NUP54-217ENST00000514987 CERKLQ49MI3 558 aaPredicted RBP16.58■□□□□ 0.24
NUP54-217ENST00000514987 HYIQ5T013 277 aa16.58■□□□□ 0.24
NUP54-217ENST00000514987 MOXD1Q6UVY6 613 aa16.58■□□□□ 0.24
NUP54-217ENST00000514987 TEX2Q8IWB9 1127 aa16.58■□□□□ 0.24
NUP54-217ENST00000514987 KRT222Q8N1A0 295 aa16.58■□□□□ 0.24
NUP54-217ENST00000514987 ZNF622Q969S3 477 aaKnown RBP eCLIP16.58■□□□□ 0.24
NUP54-217ENST00000514987 ERGIC2Q96RQ1 377 aa16.58■□□□□ 0.24
NUP54-217ENST00000514987 MXD3Q9BW11 206 aa16.58■□□□□ 0.24
NUP54-217ENST00000514987 FAM53CQ9NYF3 392 aa16.58■□□□□ 0.24
NUP54-217ENST00000514987 CDC23Q9UJX2 597 aa16.58■□□□□ 0.24
NUP54-217ENST00000514987 SERPINA10Q9UK55 444 aa16.58■□□□□ 0.24
NUP54-217ENST00000514987 ATF5Q9Y2D1 282 aaPredicted RBP16.58■□□□□ 0.24
NUP54-217ENST00000514987 STK24Q9Y6E0 443 aa16.58■□□□□ 0.24
NUP54-217ENST00000514987 MYMKA6NI61 221 aa16.57■□□□□ 0.24
NUP54-217ENST00000514987 SPDYE4A6NLX3 237 aa16.57■□□□□ 0.24
NUP54-217ENST00000514987 USP17L10C9JJH3 530 aa16.57■□□□□ 0.24
NUP54-217ENST00000514987 PPP1R11O60927 126 aaPredicted RBP16.57■□□□□ 0.24
NUP54-217ENST00000514987 NDUFA10O95299 355 aa16.57■□□□□ 0.24
NUP54-217ENST00000514987 ZBED6P86452 979 aa16.57■□□□□ 0.24
NUP54-217ENST00000514987 CDK17Q00537 523 aa16.57■□□□□ 0.24
NUP54-217ENST00000514987 AP3B2Q13367 1082 aa16.57■□□□□ 0.24
NUP54-217ENST00000514987 MCM6Q14566 821 aa16.57■□□□□ 0.24
NUP54-217ENST00000514987 MEA1Q16626 185 aa16.57■□□□□ 0.24
NUP54-217ENST00000514987 ZNF569Q5MCW4 686 aa16.57■□□□□ 0.24
NUP54-217ENST00000514987 DACT2Q5SW24 774 aa16.57■□□□□ 0.24
NUP54-217ENST00000514987 TTBK2Q6IQ55 1244 aa16.57■□□□□ 0.24
NUP54-217ENST00000514987 TATDN1Q6P1N9 297 aa16.57■□□□□ 0.24
NUP54-217ENST00000514987 TMCO3Q6UWJ1 677 aa16.57■□□□□ 0.24
NUP54-217ENST00000514987 TMEM179Q6ZVK1 233 aa16.57■□□□□ 0.24
NUP54-217ENST00000514987 RSRC2Q7L4I2 434 aaKnown RBP16.57■□□□□ 0.24
NUP54-217ENST00000514987 C2CD5Q86YS7 1000 aa16.57■□□□□ 0.24
NUP54-217ENST00000514987 CCDC170Q8IYT3 715 aa16.57■□□□□ 0.24
NUP54-217ENST00000514987 LRRN4CLQ8ND94 238 aa16.57■□□□□ 0.24
NUP54-217ENST00000514987 TSG101Q99816 390 aa16.57■□□□□ 0.24
NUP54-217ENST00000514987 NOC4LQ9BVI4 516 aaKnown RBP16.57■□□□□ 0.24
NUP54-217ENST00000514987 HAUS4Q9H6D7 363 aa16.57■□□□□ 0.24
NUP54-217ENST00000514987 BMP2KQ9NSY1 1161 aaPredicted RBP16.57■□□□□ 0.24
NUP54-217ENST00000514987 SYNPO2Q9UMS6 1093 aa16.57■□□□□ 0.24
NUP54-217ENST00000514987 ADAMTSL1Q8N6G6 1762 aa16.57■□□□□ 0.24
NUP54-217ENST00000514987 COL2A1P02458 1487 aaPredicted RBP16.56■□□□□ 0.24
NUP54-217ENST00000514987 CYP3A7-CYP3A51PA0A087WV96 503 aa16.56■□□□□ 0.24
NUP54-217ENST00000514987 B4DLN1 442 aa16.56■□□□□ 0.24
NUP54-217ENST00000514987 POTEB2H3BUK9 544 aa16.56■□□□□ 0.24
NUP54-217ENST00000514987 EDIL3O43854 480 aa16.56■□□□□ 0.24
NUP54-217ENST00000514987 APBA3O96018 575 aa16.56■□□□□ 0.24
NUP54-217ENST00000514987 CYP3A7P24462 503 aa16.56■□□□□ 0.24
NUP54-217ENST00000514987 CYLC1P35663 651 aaPredicted RBP16.56■□□□□ 0.24
NUP54-217ENST00000514987 SLC1A4P43007 532 aa16.56■□□□□ 0.24
NUP54-217ENST00000514987 NFIAQ12857 509 aa16.56■□□□□ 0.24
NUP54-217ENST00000514987 SLFN13Q68D06 897 aa16.56■□□□□ 0.24
NUP54-217ENST00000514987 CC2D2BQ6DHV5 1058 aa16.56■□□□□ 0.24
NUP54-217ENST00000514987 CLEC10AQ8IUN9 316 aa16.56■□□□□ 0.24
NUP54-217ENST00000514987 KIAA0895Q8NCT3 520 aa16.56■□□□□ 0.24
NUP54-217ENST00000514987 EHBP1Q8NDI1 1231 aa16.56■□□□□ 0.24
NUP54-217ENST00000514987 NAPGQ99747 312 aaPredicted RBP16.56■□□□□ 0.24
NUP54-217ENST00000514987 PCDHA12Q9UN75 941 aa16.56■□□□□ 0.24
NUP54-217ENST00000514987 RNF225M0QZC1 329 aaPredicted RBP16.55■□□□□ 0.24
NUP54-217ENST00000514987 ENTPD3O75355 529 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 FCER1AP12319 257 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 EEF2P13639 858 aaKnown RBP16.55■□□□□ 0.24
NUP54-217ENST00000514987 TRAF1Q13077 416 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 UBE2SQ16763 222 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 KIF4BQ2VIQ3 1234 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 KCTD1Q719H9 257 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 SRGAP1Q7Z6B7 1085 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 CCDC84Q86UT8 332 aaPredicted RBP16.55■□□□□ 0.24
NUP54-217ENST00000514987 SLFN12Q8IYM2 578 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 GMCL1P1Q8NEA9 526 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 SUPT20HQ8NEM7 779 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 CNKSR1Q969H4 720 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 GMCL1Q96IK5 515 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 DBNDD1Q9H9R9 158 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 ECE2O60344 883 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 KIF20AO95235 890 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 IPO7O95373 1038 aaKnown RBP16.55■□□□□ 0.24
NUP54-217ENST00000514987 FOSP01100 380 aaPredicted RBP16.55■□□□□ 0.24
NUP54-217ENST00000514987 TRIM21P19474 475 aaKnown RBP16.55■□□□□ 0.24
NUP54-217ENST00000514987 SLC16A2P36021 539 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 CLCN6P51797 869 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 GABPB1Q06547 395 aaPredicted RBP16.55■□□□□ 0.24
NUP54-217ENST00000514987 WHAMMP3Q1A5X7 153 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 QRICH1Q2TAL8 776 aa16.55■□□□□ 0.24
NUP54-217ENST00000514987 ARHGAP27Q6ZUM4 889 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms