RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 GTF3C6Q969F1 213 aa23.24■■□□□ 1.31
USP53-208ENST00000514305 FERMT2Q96AC1 680 aa23.24■■□□□ 1.31
USP53-208ENST00000514305 AMNQ9BXJ7 453 aa23.24■■□□□ 1.31
USP53-208ENST00000514305 RNF26Q9BY78 433 aaPredicted RBP23.24■■□□□ 1.31
USP53-208ENST00000514305 SYNGAP1Q96PV0 1343 aa23.24■■□□□ 1.31
USP53-208ENST00000514305 hCG_1984214I3L0E3 225 aa23.23■■□□□ 1.31
USP53-208ENST00000514305 SCRN1Q12765 414 aa23.23■■□□□ 1.31
USP53-208ENST00000514305 CCDC174Q6PII3 467 aa23.23■■□□□ 1.31
USP53-208ENST00000514305 HOMER1Q86YM7 354 aa23.23■■□□□ 1.31
USP53-208ENST00000514305 ZNF713Q8N859 430 aaPredicted RBP23.23■■□□□ 1.31
USP53-208ENST00000514305 CHST13Q8NET6 341 aa23.23■■□□□ 1.31
USP53-208ENST00000514305 SNX21Q969T3 373 aa23.23■■□□□ 1.31
USP53-208ENST00000514305 MTMR8Q96EF0 704 aa23.23■■□□□ 1.31
USP53-208ENST00000514305 PRDM5Q9NQX1 630 aaPredicted RBP23.23■■□□□ 1.31
USP53-208ENST00000514305 FAM217BQ9NTX9 383 aaPredicted RBP23.23■■□□□ 1.31
USP53-208ENST00000514305 CCPG1Q9ULG6 757 aa23.23■■□□□ 1.31
USP53-208ENST00000514305 MCM3APO60318 1980 aa23.22■■□□□ 1.31
USP53-208ENST00000514305 DNAJC25-GNG10A0A024R161 153 aa23.22■■□□□ 1.31
USP53-208ENST00000514305 ZNF865P0CJ78 1059 aaPredicted RBP23.22■■□□□ 1.31
USP53-208ENST00000514305 TAL1P17542 331 aaPredicted RBP23.22■■□□□ 1.31
USP53-208ENST00000514305 VASPP50552 380 aaPredicted RBP23.22■■□□□ 1.31
USP53-208ENST00000514305 SNX17Q15036 470 aa23.22■■□□□ 1.31
USP53-208ENST00000514305 TRIM60Q495X7 471 aa23.22■■□□□ 1.31
USP53-208ENST00000514305 WASF1Q92558 559 aa23.22■■□□□ 1.31
USP53-208ENST00000514305 LLPHQ9BRT6 129 aaKnown RBP23.22■■□□□ 1.31
USP53-208ENST00000514305 MAF1Q9H063 256 aa23.22■■□□□ 1.31
USP53-208ENST00000514305 NCOA5Q9HCD5 579 aaKnown RBP23.22■■□□□ 1.31
USP53-208ENST00000514305 MRPL11Q9Y3B7 192 aaKnown RBP23.22■■□□□ 1.31
USP53-208ENST00000514305 PRPF3O43395 683 aaKnown RBP23.21■■□□□ 1.31
USP53-208ENST00000514305 PGK1P00558 417 aa23.21■■□□□ 1.31
USP53-208ENST00000514305 QRICH1Q2TAL8 776 aa23.21■■□□□ 1.31
USP53-208ENST00000514305 C1orf53Q5VUE5 145 aa23.21■■□□□ 1.31
USP53-208ENST00000514305 MAMDC4Q6UXC1 1216 aa23.21■■□□□ 1.31
USP53-208ENST00000514305 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.21■■□□□ 1.31
USP53-208ENST00000514305 ZNF467Q7Z7K2 595 aaPredicted RBP23.21■■□□□ 1.31
USP53-208ENST00000514305 PIGSQ96S52 555 aa23.21■■□□□ 1.31
USP53-208ENST00000514305 CPVLQ9H3G5 476 aa23.21■■□□□ 1.31
USP53-208ENST00000514305 ZHX1Q9UKY1 873 aaPredicted RBP23.21■■□□□ 1.31
USP53-208ENST00000514305 FAM184BQ9ULE4 1060 aa23.21■■□□□ 1.31
USP53-208ENST00000514305 PHF24Q9UPV7 400 aa23.21■■□□□ 1.31
USP53-208ENST00000514305 KIF3AQ9Y496 699 aa23.21■■□□□ 1.31
USP53-208ENST00000514305 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.21■■□□□ 1.31
USP53-208ENST00000514305 ABCB11O95342 1321 aa23.21■■□□□ 1.31
USP53-208ENST00000514305 CYTH3O43739 400 aa23.2■■□□□ 1.3
USP53-208ENST00000514305 XBP1P17861 261 aa23.2■■□□□ 1.3
USP53-208ENST00000514305 DEFB123Q8N688 67 aa23.2■■□□□ 1.3
USP53-208ENST00000514305 CCDC12Q8WUD4 166 aaPredicted RBP23.2■■□□□ 1.3
USP53-208ENST00000514305 TMX3Q96JJ7 454 aa23.2■■□□□ 1.3
USP53-208ENST00000514305 SLC26A6Q9BXS9 759 aa23.2■■□□□ 1.3
USP53-208ENST00000514305 HOMER2Q9NSB8 354 aa23.2■■□□□ 1.3
USP53-208ENST00000514305 V9GY48 417 aaPredicted RBP23.2■■□□□ 1.3
USP53-208ENST00000514305 CNTNAP5Q8WYK1 1306 aa23.19■■□□□ 1.3
USP53-208ENST00000514305 MAP3K13O43283 966 aa23.19■■□□□ 1.3
USP53-208ENST00000514305 DEXIO95424 95 aa23.19■■□□□ 1.3
USP53-208ENST00000514305 ALAS1P13196 640 aa23.19■■□□□ 1.3
USP53-208ENST00000514305 HMGN5P82970 282 aaKnown RBP23.19■■□□□ 1.3
USP53-208ENST00000514305 BECN1Q14457 450 aa23.19■■□□□ 1.3
USP53-208ENST00000514305 NTRK3Q16288 839 aa23.19■■□□□ 1.3
USP53-208ENST00000514305 MCF2L2Q86YR7 1114 aa23.19■■□□□ 1.3
USP53-208ENST00000514305 CMTR1Q8N1G2 835 aaKnown RBP23.19■■□□□ 1.3
USP53-208ENST00000514305 SAMD3Q8N6K7 520 aa23.19■■□□□ 1.3
USP53-208ENST00000514305 NECAB1Q8N987 351 aa23.19■■□□□ 1.3
USP53-208ENST00000514305 ACAD9Q9H845 621 aa23.19■■□□□ 1.3
USP53-208ENST00000514305 PCDHA1Q9Y5I3 950 aa23.19■■□□□ 1.3
USP53-208ENST00000514305 K7ELQ4 463 aaPredicted RBP23.18■■□□□ 1.3
USP53-208ENST00000514305 SNAI1O95863 264 aaPredicted RBP23.18■■□□□ 1.3
USP53-208ENST00000514305 TEX2Q8IWB9 1127 aa23.18■■□□□ 1.3
USP53-208ENST00000514305 CCDC83Q8IWF9 413 aa23.18■■□□□ 1.3
USP53-208ENST00000514305 FAM177A1Q8N128 213 aaPredicted RBP23.18■■□□□ 1.3
USP53-208ENST00000514305 PIBF1Q8WXW3 757 aa23.18■■□□□ 1.3
USP53-208ENST00000514305 LENG1Q96BZ8 264 aaPredicted RBP23.18■■□□□ 1.3
USP53-208ENST00000514305 AGBL1Q96MI9 1066 aa23.18■■□□□ 1.3
USP53-208ENST00000514305 TRERF1Q96PN7 1200 aa23.18■■□□□ 1.3
USP53-208ENST00000514305 GLT8D2Q9H1C3 349 aa23.18■■□□□ 1.3
USP53-208ENST00000514305 ZNF536O15090 1300 aa23.17■■□□□ 1.3
USP53-208ENST00000514305 STK36Q9NRP7 1315 aa23.17■■□□□ 1.3
USP53-208ENST00000514305 SYNRGQ9UMZ2 1314 aa23.17■■□□□ 1.3
USP53-208ENST00000514305 A0A1W2PQ45 241 aaPredicted RBP23.17■■□□□ 1.3
USP53-208ENST00000514305 A0A1W2PQY0 241 aa23.17■■□□□ 1.3
USP53-208ENST00000514305 SNAP25P60880 206 aa23.17■■□□□ 1.3
USP53-208ENST00000514305 FUT2Q10981 343 aa23.17■■□□□ 1.3
USP53-208ENST00000514305 ACVR2BQ13705 512 aa23.17■■□□□ 1.3
USP53-208ENST00000514305 TSEN34Q9BSV6 310 aaKnown RBP23.17■■□□□ 1.3
USP53-208ENST00000514305 ABHD16BQ9H3Z7 469 aa23.17■■□□□ 1.3
USP53-208ENST00000514305 PDLIM7Q9NR12 457 aa23.17■■□□□ 1.3
USP53-208ENST00000514305 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.17■■□□□ 1.3
USP53-208ENST00000514305 ADAMTS4O75173 837 aa23.16■■□□□ 1.3
USP53-208ENST00000514305 SCG2P13521 617 aa23.16■■□□□ 1.3
USP53-208ENST00000514305 PFKFB3Q16875 520 aaPredicted RBP23.16■■□□□ 1.3
USP53-208ENST00000514305 USH1GQ495M9 461 aa23.16■■□□□ 1.3
USP53-208ENST00000514305 PHKBQ93100 1093 aa23.16■■□□□ 1.3
USP53-208ENST00000514305 SPC25Q9HBM1 224 aa23.16■■□□□ 1.3
USP53-208ENST00000514305 RNF146Q9NTX7 359 aa23.16■■□□□ 1.3
USP53-208ENST00000514305 MAP3K20Q9NYL2 800 aaKnown RBP23.16■■□□□ 1.3
USP53-208ENST00000514305 POTEB2H3BUK9 544 aa23.15■■□□□ 1.3
USP53-208ENST00000514305 DUSP11O75319 330 aaKnown RBP23.15■■□□□ 1.3
USP53-208ENST00000514305 LARGE1O95461 756 aa23.15■■□□□ 1.3
USP53-208ENST00000514305 TLE2Q04725 743 aa23.15■■□□□ 1.3
USP53-208ENST00000514305 PPP1R18Q6NYC8 613 aa23.15■■□□□ 1.3
USP53-208ENST00000514305 Q7L0L9 218 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms