RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM6-205	ENST00000507449	MYCLP1	P12525	358 aa	Predicted RBP	4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	ENDOU	P21128	410 aa	Known RBP	4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	GPR85	P60893	370 aa		4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	LCE4A	Q5TA78	99 aa		4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	LCE5A	Q5TCM9	118 aa		4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	ANGEL2	Q5VTE6	544 aa	Known RBP	4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	LBX2	Q6XYB7	198 aa		4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	KRT26	Q7Z3Y9	468 aa		4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	RNF180	Q86T96	592 aa		4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	LRRTM3	Q86VH5	581 aa		4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	NLRP10	Q86W26	655 aa		4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	NAT16	Q8N8M0	369 aa		4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	ALPK1	Q96QP1	1244 aa		4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	JMJD8	Q96S16	334 aa		4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	ZFYVE21	Q9BQ24	234 aa		4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	PCDH12	Q9NPG4	1184 aa		4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	INTS7	Q9NVH2	962 aa	Known RBP	4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	MAGEC2	Q9UBF1	373 aa	Predicted RBP	4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	FBLN5	Q9UBX5	448 aa		4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	ADAMTS6	Q9UKP5	1117 aa		4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	PCDHA8	Q9Y5H6	950 aa		4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	COL4A3BP	Q9Y5P4	624 aa		4.97	□□□□□ -1.61
LSM6-205	ENST00000507449	ARVCF	O00192	962 aa		4.96	□□□□□ -1.62
LSM6-205	ENST00000507449	AQP7	O14520	342 aa		4.96	□□□□□ -1.62
LSM6-205	ENST00000507449	PDE8A	O60658	829 aa		4.96	□□□□□ -1.62
LSM6-205	ENST00000507449	USP2	O75604	605 aa	Predicted RBP	4.96	□□□□□ -1.62
LSM6-205	ENST00000507449	TBC1D8	O95759	1140 aa		4.96	□□□□□ -1.62
LSM6-205	ENST00000507449	NCL	P19338	710 aa	Known RBP	4.96	□□□□□ -1.62
LSM6-205	ENST00000507449	FUT4	P22083	530 aa		4.96	□□□□□ -1.62
LSM6-205	ENST00000507449	STAT3	P40763	770 aa		4.96	□□□□□ -1.62
LSM6-205	ENST00000507449	KIR3DS1	Q14943	382 aa		4.96	□□□□□ -1.62
LSM6-205	ENST00000507449	IQCE	Q6IPM2	695 aa		4.96	□□□□□ -1.62
LSM6-205	ENST00000507449	IFNL3	Q8IZI9	196 aa		4.96	□□□□□ -1.62
LSM6-205	ENST00000507449	FLCN	Q8NFG4	579 aa		4.96	□□□□□ -1.62
LSM6-205	ENST00000507449	DDX1	Q92499	740 aa	Known RBP	4.96	□□□□□ -1.62
LSM6-205	ENST00000507449	KRTAP9-8	Q9BYQ0	159 aa		4.96	□□□□□ -1.62
LSM6-205	ENST00000507449	TNFRSF10D	Q9UBN6	386 aa		4.96	□□□□□ -1.62
LSM6-205	ENST00000507449	TMEM59L	Q9UK28	342 aa		4.96	□□□□□ -1.62
LSM6-205	ENST00000507449	PCDHA2	Q9Y5H9	948 aa		4.96	□□□□□ -1.62
LSM6-205	ENST00000507449	TRBV23OR9-2	A0A075B6M9	112 aa		4.95	□□□□□ -1.62
LSM6-205	ENST00000507449	ASL	P04424	464 aa		4.95	□□□□□ -1.62
LSM6-205	ENST00000507449	CKM	P06732	381 aa		4.95	□□□□□ -1.62
LSM6-205	ENST00000507449	POU3F2	P20265	443 aa	Predicted RBP	4.95	□□□□□ -1.62
LSM6-205	ENST00000507449	ERVFC1	P60507	584 aa		4.95	□□□□□ -1.62
LSM6-205	ENST00000507449	GUCY1A3	Q02108	690 aa		4.95	□□□□□ -1.62
LSM6-205	ENST00000507449	PCBP1	Q15365	356 aa	Known RBP eCLIP	4.95	□□□□□ -1.62
LSM6-205	ENST00000507449	SEPT7	Q16181	437 aa	Known RBP	4.95	□□□□□ -1.62
LSM6-205	ENST00000507449	PKN1	Q16512	942 aa		4.95	□□□□□ -1.62
LSM6-205	ENST00000507449	TAF7L	Q5H9L4	462 aa		4.95	□□□□□ -1.62
LSM6-205	ENST00000507449	CNNM4	Q6P4Q7	775 aa		4.95	□□□□□ -1.62
LSM6-205	ENST00000507449	RPUSD2	Q8IZ73	545 aa	Known RBP	4.95	□□□□□ -1.62
LSM6-205	ENST00000507449	UBR7	Q8N806	425 aa		4.95	□□□□□ -1.62
LSM6-205	ENST00000507449	PCDH19	Q8TAB3	1148 aa		4.95	□□□□□ -1.62
LSM6-205	ENST00000507449	MAGEB10	Q96LZ2	347 aa	Predicted RBP	4.95	□□□□□ -1.62
LSM6-205	ENST00000507449	PLCD4	Q9BRC7	762 aa		4.95	□□□□□ -1.62
LSM6-205	ENST00000507449	BRINP2	Q9C0B6	783 aa		4.95	□□□□□ -1.62
LSM6-205	ENST00000507449	MTFR1L	Q9H019	292 aa		4.95	□□□□□ -1.62
LSM6-205	ENST00000507449	DBX1	A6NMT0	343 aa		4.94	□□□□□ -1.62
LSM6-205	ENST00000507449	OPA1	O60313	960 aa		4.94	□□□□□ -1.62
LSM6-205	ENST00000507449	MSL3P1	P0C860	447 aa		4.94	□□□□□ -1.62
LSM6-205	ENST00000507449	IGFALS	P35858	605 aa		4.94	□□□□□ -1.62
LSM6-205	ENST00000507449	BCL6	P41182	706 aa		4.94	□□□□□ -1.62
LSM6-205	ENST00000507449	KIR2DL1	P43626	348 aa	Predicted RBP	4.94	□□□□□ -1.62
LSM6-205	ENST00000507449	KIR2DL2	P43627	348 aa	Predicted RBP	4.94	□□□□□ -1.62
LSM6-205	ENST00000507449	HK2	P52789	917 aa		4.94	□□□□□ -1.62
LSM6-205	ENST00000507449	HSF5	Q4G112	596 aa	Predicted RBP	4.94	□□□□□ -1.62
LSM6-205	ENST00000507449	TIGD5	Q53EQ6	642 aa		4.94	□□□□□ -1.62
LSM6-205	ENST00000507449	HLA-DQA1	Q5Y7H0	255 aa		4.94	□□□□□ -1.62
LSM6-205	ENST00000507449	SLC23A3	Q6PIS1	610 aa		4.94	□□□□□ -1.62
LSM6-205	ENST00000507449	STRA8	Q7Z7C7	330 aa		4.94	□□□□□ -1.62
LSM6-205	ENST00000507449	MTDH	Q86UE4	582 aa	Known RBP	4.94	□□□□□ -1.62
LSM6-205	ENST00000507449		Q8N1Y9	231 aa		4.94	□□□□□ -1.62
LSM6-205	ENST00000507449	MTA3	Q9BTC8	594 aa		4.94	□□□□□ -1.62
LSM6-205	ENST00000507449	TMX1	Q9H3N1	280 aa		4.94	□□□□□ -1.62
LSM6-205	ENST00000507449	CAAP1	Q9H8G2	361 aa		4.94	□□□□□ -1.62
LSM6-205	ENST00000507449	IPPK	Q9H8X2	491 aa		4.94	□□□□□ -1.62
LSM6-205	ENST00000507449	MBNL3	Q9NUK0	354 aa	Known RBP	4.94	□□□□□ -1.62
LSM6-205	ENST00000507449	GULP1	Q9UBP9	304 aa		4.94	□□□□□ -1.62
LSM6-205	ENST00000507449	ADGRE2	Q9UHX3	823 aa		4.94	□□□□□ -1.62
LSM6-205	ENST00000507449	MAPRE3	Q9UPY8	281 aa		4.94	□□□□□ -1.62
LSM6-205	ENST00000507449	TIMM13	Q9Y5L4	95 aa	Predicted RBP	4.94	□□□□□ -1.62
LSM6-205	ENST00000507449		A0A1W2PQ45	241 aa	Predicted RBP	4.93	□□□□□ -1.62
LSM6-205	ENST00000507449		A0A1W2PQY0	241 aa		4.93	□□□□□ -1.62
LSM6-205	ENST00000507449	WNT9A	O14904	365 aa		4.93	□□□□□ -1.62
LSM6-205	ENST00000507449	GLRX3	O76003	335 aa	Known RBP	4.93	□□□□□ -1.62
LSM6-205	ENST00000507449	SOD2	P04179	222 aa		4.93	□□□□□ -1.62
LSM6-205	ENST00000507449	RNASE1	P07998	156 aa	Known RBP	4.93	□□□□□ -1.62
LSM6-205	ENST00000507449	JMJD7	P0C870	316 aa		4.93	□□□□□ -1.62
LSM6-205	ENST00000507449	SRGAP2C	P0DJJ0	459 aa		4.93	□□□□□ -1.62
LSM6-205	ENST00000507449	FPR2	P25090	351 aa		4.93	□□□□□ -1.62
LSM6-205	ENST00000507449	GRK2	P25098	689 aa		4.93	□□□□□ -1.62
LSM6-205	ENST00000507449	GRK3	P35626	688 aa		4.93	□□□□□ -1.62
LSM6-205	ENST00000507449	RTP1	P59025	263 aa		4.93	□□□□□ -1.62
LSM6-205	ENST00000507449	MVK	Q03426	396 aa		4.93	□□□□□ -1.62
LSM6-205	ENST00000507449	DUSP4	Q13115	394 aa		4.93	□□□□□ -1.62
LSM6-205	ENST00000507449	KIZ	Q2M2Z5	673 aa		4.93	□□□□□ -1.62
LSM6-205	ENST00000507449	CDCA2	Q69YH5	1023 aa	Predicted RBP	4.93	□□□□□ -1.62
LSM6-205	ENST00000507449	ZCCHC8	Q6NZY4	707 aa	Known RBP	4.93	□□□□□ -1.62
LSM6-205	ENST00000507449	PKN3	Q6P5Z2	889 aa		4.93	□□□□□ -1.62

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