RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 TUBE1Q9UJT0 475 aa11.85□□□□□ -0.51
LIMCH1-205ENST00000503057 GRIPAP1Q4V328 841 aa11.85□□□□□ -0.51
LIMCH1-205ENST00000503057 ARMCX5Q6P1M9 558 aa11.85□□□□□ -0.51
LIMCH1-205ENST00000503057 GIMAP7Q8NHV1 300 aa11.85□□□□□ -0.51
LIMCH1-205ENST00000503057 GOLGA8KD6RF30 607 aa11.85□□□□□ -0.51
LIMCH1-205ENST00000503057 EXOC3L4Q17RC7 722 aa11.85□□□□□ -0.51
LIMCH1-205ENST00000503057 FAM178BQ8IXR5 827 aa11.85□□□□□ -0.51
LIMCH1-205ENST00000503057 CCDC114Q96M63 670 aa11.85□□□□□ -0.51
LIMCH1-205ENST00000503057 AK9Q5TCS8 1911 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 A0A0G2JLW4 131 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 CCDC151A5D8V7 595 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 PPP2R5EQ16537 467 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 RBM43Q6ZSC3 357 aaKnown RBP11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 CPLX4Q7Z7G2 160 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 RAB17Q9H0T7 212 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 ABHD10Q9NUJ1 306 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 GDAQ9Y2T3 454 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 USP27XA6NNY8 438 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 LGALS16A8MUM7 142 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 NTSR2O95665 410 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 NPR1P16066 1061 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 SLC16A2P36021 539 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 CYP2J2P51589 502 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 CLCN6P51797 869 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 CASP7P55210 303 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 SBK1Q52WX2 424 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 OTUD6AQ7L8S5 288 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 CPXCR1Q8N123 301 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 ENGASEQ8NFI3 743 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 PI4KBQ9UBF8 816 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 NR2F2P24468 414 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 TNFAIP1Q13829 316 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 UNC13DQ70J99 1090 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 CD209Q9NNX6 404 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 TCP10L2B9ZVM9 353 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 LONRF2Q1L5Z9 754 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 FBXO38Q6PIJ6 1188 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 DAAM2Q86T65 1068 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 CCDC25Q86WR0 208 aa11.84□□□□□ -0.51
LIMCH1-205ENST00000503057 KCNK3O14649 394 aa11.83□□□□□ -0.51
LIMCH1-205ENST00000503057 TRIM37O94972 964 aa11.83□□□□□ -0.51
LIMCH1-205ENST00000503057 RASSF7Q02833 373 aa11.83□□□□□ -0.51
LIMCH1-205ENST00000503057 DMTNQ08495 405 aa11.83□□□□□ -0.51
LIMCH1-205ENST00000503057 PPP4R3CPQ6ZMV5 832 aa11.83□□□□□ -0.51
LIMCH1-205ENST00000503057 NLRX1Q86UT6 975 aa11.83□□□□□ -0.51
LIMCH1-205ENST00000503057 MICALL1Q8N3F8 863 aa11.83□□□□□ -0.51
LIMCH1-205ENST00000503057 FAM212AQ96EL1 285 aa11.83□□□□□ -0.51
LIMCH1-205ENST00000503057 EEF2KMTQ96G04 330 aa11.83□□□□□ -0.51
LIMCH1-205ENST00000503057 SPATA31A1Q5TZJ5 1347 aa11.83□□□□□ -0.51
LIMCH1-205ENST00000503057 TLDC2A0PJX2 215 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 ENC1O14682 589 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 SEC31AO94979 1220 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 AFPP02771 609 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 CCZ1BP86790 482 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 CCZ1P86791 482 aaPredicted RBP11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 ARHGAP44Q17R89 818 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 FBXL16Q8N461 479 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 NDST4Q9H3R1 872 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 K7ENM7 598 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 LRRC41Q15345 812 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 FNBP4Q8N3X1 1017 aaPredicted RBP11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 DCAF4Q8WV16 495 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 GPR101Q96P66 508 aaPredicted RBP11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 PARD6BQ9BYG5 372 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 ANAPC4Q9UJX5 808 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 FOXN1O15353 648 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 NF2P35240 595 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 PRCPP42785 496 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 UBE2SQ16763 222 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 RC3H1Q5TC82 1133 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 SYDE2Q5VT97 1194 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 LRCH2Q5VUJ6 765 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 MSL1Q68DK7 614 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 ARHGEF1Q92888 912 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 FUCA2Q9BTY2 467 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 AGXT2Q9BYV1 514 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 HOMER2Q9NSB8 354 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 PARP2Q9UGN5 583 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 SMIM23A6NLE4 172 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 USP17L5A8MUK1 530 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 HPDP32754 393 aaPredicted RBP11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 PABPC4Q13310 644 aaKnown RBP eCLIP11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 AP3B2Q13367 1082 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 SRBD1Q8N5C6 995 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 RASSF4Q9H2L5 321 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 PLCB1Q9NQ66 1216 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 SAMD15Q9P1V8 674 aa11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 DDX41Q9UJV9 622 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-205ENST00000503057 NDUFAB1O14561 156 aa11.82□□□□□ -0.52
LIMCH1-205ENST00000503057 H2AFZP0C0S5 128 aa11.82□□□□□ -0.52
LIMCH1-205ENST00000503057 PLA2G4BP0C869 781 aa11.82□□□□□ -0.52
LIMCH1-205ENST00000503057 BMP3P12645 472 aa11.82□□□□□ -0.52
LIMCH1-205ENST00000503057 FERP16591 822 aa11.82□□□□□ -0.52
LIMCH1-205ENST00000503057 CASP1P29466 404 aa11.82□□□□□ -0.52
LIMCH1-205ENST00000503057 CDC37Q16543 378 aaPredicted RBP11.82□□□□□ -0.52
LIMCH1-205ENST00000503057 C12orf60Q5U649 245 aa11.82□□□□□ -0.52
LIMCH1-205ENST00000503057 NSMFQ6X4W1 530 aa11.82□□□□□ -0.52
LIMCH1-205ENST00000503057 H2AFVQ71UI9 128 aa11.82□□□□□ -0.52
LIMCH1-205ENST00000503057 MAIP1Q8WWC4 291 aa11.82□□□□□ -0.52
LIMCH1-205ENST00000503057 CSRNP1Q96S65 589 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms