RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 PAXIP1Q6ZW49 1069 aaPredicted RBP14.4□□□□□ -0.1
VPS52-220ENST00000493674 KRI1Q8N9T8 703 aaKnown RBP14.4□□□□□ -0.1
VPS52-220ENST00000493674 ZNF579Q8NAF0 562 aaKnown RBP14.4□□□□□ -0.1
VPS52-220ENST00000493674 GTF3C2Q8WUA4 911 aaPredicted RBP14.4□□□□□ -0.1
VPS52-220ENST00000493674 FERMT2Q96AC1 680 aa14.4□□□□□ -0.1
VPS52-220ENST00000493674 TRERF1Q96PN7 1200 aa14.4□□□□□ -0.1
VPS52-220ENST00000493674 NAP1L4Q99733 375 aaKnown RBP14.4□□□□□ -0.1
VPS52-220ENST00000493674 COL20A1Q9P218 1284 aa14.4□□□□□ -0.1
VPS52-220ENST00000493674 PNMA3Q9UL41 463 aa14.4□□□□□ -0.1
VPS52-220ENST00000493674 RABGAP1Q9Y3P9 1069 aa14.4□□□□□ -0.1
VPS52-220ENST00000493674 CTDP1Q9Y5B0 961 aaPredicted RBP14.4□□□□□ -0.1
VPS52-220ENST00000493674 MRVI1Q9Y6F6 885 aa14.4□□□□□ -0.1
VPS52-220ENST00000493674 SPDYE3A6NKU9 549 aa14.39□□□□□ -0.11
VPS52-220ENST00000493674 FAM155AB1AL88 458 aaPredicted RBP14.39□□□□□ -0.11
VPS52-220ENST00000493674 MCM7P33993 719 aa14.39□□□□□ -0.11
VPS52-220ENST00000493674 ARHGAP4P98171 946 aa14.39□□□□□ -0.11
VPS52-220ENST00000493674 LETM2Q2VYF4 491 aa14.39□□□□□ -0.11
VPS52-220ENST00000493674 RESP18Q5W5W9 173 aa14.39□□□□□ -0.11
VPS52-220ENST00000493674 CHST13Q8NET6 341 aa14.39□□□□□ -0.11
VPS52-220ENST00000493674 ENGASEQ8NFI3 743 aa14.39□□□□□ -0.11
VPS52-220ENST00000493674 SYTL5Q8TDW5 730 aaPredicted RBP14.39□□□□□ -0.11
VPS52-220ENST00000493674 PTPN18Q99952 460 aa14.39□□□□□ -0.11
VPS52-220ENST00000493674 SPATC1LQ9H0A9 340 aa14.39□□□□□ -0.11
VPS52-220ENST00000493674 TMEM60Q9H2L4 133 aa14.39□□□□□ -0.11
VPS52-220ENST00000493674 ZCCHC17Q9NP64 241 aaKnown RBP14.39□□□□□ -0.11
VPS52-220ENST00000493674 RBPJLQ9UBG7 517 aa14.39□□□□□ -0.11
VPS52-220ENST00000493674 ADGRA2Q96PE1 1338 aa14.39□□□□□ -0.11
VPS52-220ENST00000493674 ARID2Q68CP9 1835 aa14.38□□□□□ -0.11
VPS52-220ENST00000493674 PDHXO00330 501 aa14.38□□□□□ -0.11
VPS52-220ENST00000493674 SLC37A4O43826 429 aa14.38□□□□□ -0.11
VPS52-220ENST00000493674 CCNT1O60563 726 aaKnown RBP14.38□□□□□ -0.11
VPS52-220ENST00000493674 TDP2O95551 362 aa14.38□□□□□ -0.11
VPS52-220ENST00000493674 LIG1P18858 919 aa14.38□□□□□ -0.11
VPS52-220ENST00000493674 CMA1P23946 247 aa14.38□□□□□ -0.11
VPS52-220ENST00000493674 ZNF157P51786 506 aaPredicted RBP14.38□□□□□ -0.11
VPS52-220ENST00000493674 RPS6P62753 249 aaKnown RBP14.38□□□□□ -0.11
VPS52-220ENST00000493674 GRIN1Q05586 938 aa14.38□□□□□ -0.11
VPS52-220ENST00000493674 IL17AQ16552 155 aa14.38□□□□□ -0.11
VPS52-220ENST00000493674 CYP4F22Q6NT55 531 aa14.38□□□□□ -0.11
VPS52-220ENST00000493674 SHC4Q6S5L8 630 aa14.38□□□□□ -0.11
VPS52-220ENST00000493674 SLC30A10Q6XR72 485 aa14.38□□□□□ -0.11
VPS52-220ENST00000493674 REM2Q8IYK8 340 aaPredicted RBP14.38□□□□□ -0.11
VPS52-220ENST00000493674 FAM43AQ8N2R8 423 aa14.38□□□□□ -0.11
VPS52-220ENST00000493674 MRPS27Q92552 414 aaKnown RBP14.38□□□□□ -0.11
VPS52-220ENST00000493674 LENG9Q96B70 501 aa14.38□□□□□ -0.11
VPS52-220ENST00000493674 MTMR9Q96QG7 549 aa14.38□□□□□ -0.11
VPS52-220ENST00000493674 GOLPH3LQ9H4A5 285 aa14.38□□□□□ -0.11
VPS52-220ENST00000493674 ACAD9Q9H845 621 aa14.38□□□□□ -0.11
VPS52-220ENST00000493674 TXNRD2Q9NNW7 524 aa14.38□□□□□ -0.11
VPS52-220ENST00000493674 HPSEQ9Y251 543 aa14.38□□□□□ -0.11
VPS52-220ENST00000493674 ZSWIM8A7E2V4 1837 aa14.38□□□□□ -0.11
VPS52-220ENST00000493674 CASP8AP2Q9UKL3 1982 aa14.37□□□□□ -0.11
VPS52-220ENST00000493674 MANSC4A6NHS7 340 aaPredicted RBP14.37□□□□□ -0.11
VPS52-220ENST00000493674 NEMFO60524 1076 aa14.37□□□□□ -0.11
VPS52-220ENST00000493674 OR52Z1P0C646 297 aa14.37□□□□□ -0.11
VPS52-220ENST00000493674 COPB2P35606 906 aa14.37□□□□□ -0.11
VPS52-220ENST00000493674 MKRN3Q13064 507 aaKnown RBP14.37□□□□□ -0.11
VPS52-220ENST00000493674 SNW1Q13573 536 aaKnown RBP14.37□□□□□ -0.11
VPS52-220ENST00000493674 Q4G0T1 1027 aa14.37□□□□□ -0.11
VPS52-220ENST00000493674 POTEDQ86YR6 584 aa14.37□□□□□ -0.11
VPS52-220ENST00000493674 CCAR1Q8IX12 1150 aaKnown RBP14.37□□□□□ -0.11
VPS52-220ENST00000493674 FSIP1Q8NA03 581 aa14.37□□□□□ -0.11
VPS52-220ENST00000493674 SHCBP1Q8NEM2 672 aa14.37□□□□□ -0.11
VPS52-220ENST00000493674 CLIC6Q96NY7 704 aa14.37□□□□□ -0.11
VPS52-220ENST00000493674 MOV10L1Q9BXT6 1211 aaKnown RBP14.37□□□□□ -0.11
VPS52-220ENST00000493674 EHMT1Q9H9B1 1298 aa14.37□□□□□ -0.11
VPS52-220ENST00000493674 KCNMB3Q9NPA1 279 aa14.37□□□□□ -0.11
VPS52-220ENST00000493674 A1CFQ9NQ94 594 aaKnown RBP14.37□□□□□ -0.11
VPS52-220ENST00000493674 HOMER2Q9NSB8 354 aa14.37□□□□□ -0.11
VPS52-220ENST00000493674 TMEM63CQ9P1W3 806 aa14.37□□□□□ -0.11
VPS52-220ENST00000493674 MORF4L1Q9UBU8 362 aa14.37□□□□□ -0.11
VPS52-220ENST00000493674 MYH11P35749 1972 aa14.36□□□□□ -0.11
VPS52-220ENST00000493674 IGLV3-22A0A075B6J6 115 aa14.36□□□□□ -0.11
VPS52-220ENST00000493674 GOLGA6L4A6NEF3 574 aa14.36□□□□□ -0.11
VPS52-220ENST00000493674 PEX10O60683 326 aa14.36□□□□□ -0.11
VPS52-220ENST00000493674 SLC25A27O95847 323 aa14.36□□□□□ -0.11
VPS52-220ENST00000493674 GCLCP48506 637 aaPredicted RBP14.36□□□□□ -0.11
VPS52-220ENST00000493674 MAP2K1Q02750 393 aaPredicted RBP14.36□□□□□ -0.11
VPS52-220ENST00000493674 FAM160A1Q05DH4 1040 aa14.36□□□□□ -0.11
VPS52-220ENST00000493674 RNF207Q6ZRF8 634 aa14.36□□□□□ -0.11
VPS52-220ENST00000493674 FCHSD1Q86WN1 690 aa14.36□□□□□ -0.11
VPS52-220ENST00000493674 FMR1NBQ8N0W7 255 aaPredicted RBP14.36□□□□□ -0.11
VPS52-220ENST00000493674 CYP39A1Q9NYL5 469 aa14.36□□□□□ -0.11
VPS52-220ENST00000493674 FBXO40Q9UH90 709 aa14.36□□□□□ -0.11
VPS52-220ENST00000493674 FAM86B1E9PN63 330 aa14.35□□□□□ -0.11
VPS52-220ENST00000493674 FAM86B2P0C5J1 330 aa14.35□□□□□ -0.11
VPS52-220ENST00000493674 CYP2C8P10632 490 aa14.35□□□□□ -0.11
VPS52-220ENST00000493674 PFKFB1P16118 471 aa14.35□□□□□ -0.11
VPS52-220ENST00000493674 ERVK-9P63128 1117 aa14.35□□□□□ -0.11
VPS52-220ENST00000493674 ERVK-24P63145 666 aa14.35□□□□□ -0.11
VPS52-220ENST00000493674 BAATQ14032 418 aaPredicted RBP14.35□□□□□ -0.11
VPS52-220ENST00000493674 IL31RAQ8NI17 732 aa14.35□□□□□ -0.11
VPS52-220ENST00000493674 ETNPPLQ8TBG4 499 aa14.35□□□□□ -0.11
VPS52-220ENST00000493674 PARK7Q99497 189 aaKnown RBP14.35□□□□□ -0.11
VPS52-220ENST00000493674 PAGR1Q9BTK6 254 aa14.35□□□□□ -0.11
VPS52-220ENST00000493674 CSRNP2Q9H175 543 aa14.35□□□□□ -0.11
VPS52-220ENST00000493674 DDX19AQ9NUU7 478 aaKnown RBP14.35□□□□□ -0.11
VPS52-220ENST00000493674 DDX25Q9UHL0 483 aaKnown RBP14.35□□□□□ -0.11
VPS52-220ENST00000493674 PFASO15067 1338 aa14.35□□□□□ -0.11
VPS52-220ENST00000493674 IGF2BP3O00425 579 aaKnown RBP eCLIP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms