RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 MCM6Q14566 821 aa23.66■■□□□ 1.38
CCDC88B-208ENST00000492980 TMEM119Q4V9L6 283 aa23.66■■□□□ 1.38
CCDC88B-208ENST00000492980 LARP4BQ92615 738 aaKnown RBP23.66■■□□□ 1.38
CCDC88B-208ENST00000492980 ZBTB12Q9Y330 459 aaPredicted RBP23.66■■□□□ 1.38
CCDC88B-208ENST00000492980 BTNL9Q6UXG8 535 aa23.65■■□□□ 1.38
CCDC88B-208ENST00000492980 GTPBP4Q9BZE4 634 aaKnown RBP23.65■■□□□ 1.38
CCDC88B-208ENST00000492980 THAP9Q9H5L6 903 aa23.65■■□□□ 1.38
CCDC88B-208ENST00000492980 MYMKA6NI61 221 aa23.65■■□□□ 1.38
CCDC88B-208ENST00000492980 TUBB4AP04350 444 aa23.65■■□□□ 1.38
CCDC88B-208ENST00000492980 USP11P51784 963 aa23.65■■□□□ 1.38
CCDC88B-208ENST00000492980 AP3B2Q13367 1082 aa23.65■■□□□ 1.38
CCDC88B-208ENST00000492980 SPDYE2Q495Y8 402 aa23.65■■□□□ 1.38
CCDC88B-208ENST00000492980 RAD54LQ92698 747 aa23.65■■□□□ 1.38
CCDC88B-208ENST00000492980 GJA10Q969M2 543 aa23.65■■□□□ 1.38
CCDC88B-208ENST00000492980 TRIM47Q96LD4 638 aa23.65■■□□□ 1.38
CCDC88B-208ENST00000492980 PPP2R2CQ9Y2T4 447 aa23.65■■□□□ 1.38
CCDC88B-208ENST00000492980 ZSCAN12O43309 604 aa23.64■■□□□ 1.37
CCDC88B-208ENST00000492980 MFAP3LO75121 409 aa23.64■■□□□ 1.37
CCDC88B-208ENST00000492980 GYPCP04921 128 aa23.64■■□□□ 1.37
CCDC88B-208ENST00000492980 FCER1AP12319 257 aa23.64■■□□□ 1.37
CCDC88B-208ENST00000492980 IKQ13123 557 aaPredicted RBP23.64■■□□□ 1.37
CCDC88B-208ENST00000492980 COBLL1Q53SF7 1204 aa23.64■■□□□ 1.37
CCDC88B-208ENST00000492980 FBXO11Q86XK2 927 aa23.64■■□□□ 1.37
CCDC88B-208ENST00000492980 ZNF710Q8N1W2 664 aa23.64■■□□□ 1.37
CCDC88B-208ENST00000492980 OGFOD1Q8N543 542 aa23.64■■□□□ 1.37
CCDC88B-208ENST00000492980 DUSP9Q99956 384 aaKnown RBP23.64■■□□□ 1.37
CCDC88B-208ENST00000492980 CYP3A7-CYP3A51PA0A087WV96 503 aa23.63■■□□□ 1.37
CCDC88B-208ENST00000492980 CYP3A7P24462 503 aa23.63■■□□□ 1.37
CCDC88B-208ENST00000492980 EEF1GP26641 437 aaKnown RBP23.63■■□□□ 1.37
CCDC88B-208ENST00000492980 CNNM4Q6P4Q7 775 aa23.63■■□□□ 1.37
CCDC88B-208ENST00000492980 P2RX5Q93086 422 aa23.63■■□□□ 1.37
CCDC88B-208ENST00000492980 MBOAT7Q96N66 472 aa23.63■■□□□ 1.37
CCDC88B-208ENST00000492980 P2RX7Q99572 595 aaKnown RBP23.63■■□□□ 1.37
CCDC88B-208ENST00000492980 SRRTQ9BXP5 876 aaKnown RBP23.63■■□□□ 1.37
CCDC88B-208ENST00000492980 VPS33BQ9H267 617 aa23.63■■□□□ 1.37
CCDC88B-208ENST00000492980 CCNE1P24864 410 aa23.63■■□□□ 1.37
CCDC88B-208ENST00000492980 PPP1R2P41236 205 aa23.63■■□□□ 1.37
CCDC88B-208ENST00000492980 SF3B2Q13435 895 aaKnown RBP23.63■■□□□ 1.37
CCDC88B-208ENST00000492980 SYT10Q6XYQ8 523 aa23.63■■□□□ 1.37
CCDC88B-208ENST00000492980 TOGARAM2Q6ZUX3 1019 aa23.63■■□□□ 1.37
CCDC88B-208ENST00000492980 KCNK18Q7Z418 384 aa23.63■■□□□ 1.37
CCDC88B-208ENST00000492980 CREBRFQ8IUR6 639 aa23.63■■□□□ 1.37
CCDC88B-208ENST00000492980 KIAA0895Q8NCT3 520 aa23.63■■□□□ 1.37
CCDC88B-208ENST00000492980 SLC16A10Q8TF71 515 aa23.63■■□□□ 1.37
CCDC88B-208ENST00000492980 NOC3LQ8WTT2 800 aaKnown RBP23.63■■□□□ 1.37
CCDC88B-208ENST00000492980 CPLX3Q8WVH0 158 aa23.63■■□□□ 1.37
CCDC88B-208ENST00000492980 CRYGNQ8WXF5 182 aa23.63■■□□□ 1.37
CCDC88B-208ENST00000492980 PCDHA12Q9UN75 941 aa23.63■■□□□ 1.37
CCDC88B-208ENST00000492980 RRP9O43818 475 aaKnown RBP23.62■■□□□ 1.37
CCDC88B-208ENST00000492980 MARCH6O60337 910 aa23.62■■□□□ 1.37
CCDC88B-208ENST00000492980 CASP14P31944 242 aa23.62■■□□□ 1.37
CCDC88B-208ENST00000492980 ECE1P42892 770 aa23.62■■□□□ 1.37
CCDC88B-208ENST00000492980 ECM1Q16610 540 aa23.62■■□□□ 1.37
CCDC88B-208ENST00000492980 USH1GQ495M9 461 aa23.62■■□□□ 1.37
CCDC88B-208ENST00000492980 UNC13DQ70J99 1090 aa23.62■■□□□ 1.37
CCDC88B-208ENST00000492980 KCNMB3Q9NPA1 279 aa23.62■■□□□ 1.37
CCDC88B-208ENST00000492980 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23.62■■□□□ 1.375e-7■■□□□ 13.8
CCDC88B-208ENST00000492980 GOLGB1Q14789 3259 aaKnown RBP23.62■■□□□ 1.37
CCDC88B-208ENST00000492980 PVALEFA0A1B0GWK0 134 aa23.62■■□□□ 1.37
CCDC88B-208ENST00000492980 MMP14P50281 582 aa23.62■■□□□ 1.37
CCDC88B-208ENST00000492980 FXR1P51114 621 aaKnown RBP eCLIP23.62■■□□□ 1.37
CCDC88B-208ENST00000492980 MOXD1Q6UVY6 613 aa23.62■■□□□ 1.37
CCDC88B-208ENST00000492980 SPICE1Q8N0Z3 855 aa23.62■■□□□ 1.37
CCDC88B-208ENST00000492980 HPS3Q969F9 1004 aa23.62■■□□□ 1.37
CCDC88B-208ENST00000492980 ARHGEF10LQ9HCE6 1279 aa23.62■■□□□ 1.37
CCDC88B-208ENST00000492980 ZNRF3Q9ULT6 936 aa23.62■■□□□ 1.37
CCDC88B-208ENST00000492980 BICDL2A1A5D9 508 aa23.61■■□□□ 1.37
CCDC88B-208ENST00000492980 ETF1P62495 437 aaKnown RBP23.61■■□□□ 1.37
CCDC88B-208ENST00000492980 MCTP2Q6DN12 878 aa23.61■■□□□ 1.37
CCDC88B-208ENST00000492980 TRIM65Q6PJ69 517 aa23.61■■□□□ 1.37
CCDC88B-208ENST00000492980 CNGA4Q8IV77 575 aa23.61■■□□□ 1.37
CCDC88B-208ENST00000492980 NAA15Q9BXJ9 866 aaKnown RBP23.61■■□□□ 1.37
CCDC88B-208ENST00000492980 KIAA1755Q5JYT7 1200 aa23.6■■□□□ 1.37
CCDC88B-208ENST00000492980 HYIQ5T013 277 aa23.6■■□□□ 1.37
CCDC88B-208ENST00000492980 ANKRD40Q6AI12 368 aa23.6■■□□□ 1.37
CCDC88B-208ENST00000492980 NIM1KQ8IY84 436 aa23.6■■□□□ 1.37
CCDC88B-208ENST00000492980 CSGALNACT2Q8N6G5 542 aa23.6■■□□□ 1.37
CCDC88B-208ENST00000492980 MTMR14Q8NCE2 650 aa23.6■■□□□ 1.37
CCDC88B-208ENST00000492980 ACER1Q8TDN7 264 aa23.6■■□□□ 1.37
CCDC88B-208ENST00000492980 CCDC51Q96ER9 411 aa23.6■■□□□ 1.37
CCDC88B-208ENST00000492980 ZBTB21Q9ULJ3 1066 aa23.6■■□□□ 1.37
CCDC88B-208ENST00000492980 PRR12Q9ULL5 1215 aa23.6■■□□□ 1.37
CCDC88B-208ENST00000492980 LGALS16A8MUM7 142 aa23.6■■□□□ 1.37
CCDC88B-208ENST00000492980 TAL1P17542 331 aaPredicted RBP23.6■■□□□ 1.37
CCDC88B-208ENST00000492980 ARHGAP4P98171 946 aa23.6■■□□□ 1.37
CCDC88B-208ENST00000492980 UBXN1Q04323 297 aa23.6■■□□□ 1.37
CCDC88B-208ENST00000492980 FKBP1CQ5VVH2 108 aa23.6■■□□□ 1.37
CCDC88B-208ENST00000492980 AGBL3Q8NEM8 1001 aa23.6■■□□□ 1.37
CCDC88B-208ENST00000492980 VEZTQ9HBM0 779 aa23.6■■□□□ 1.37
CCDC88B-208ENST00000492980 TMX2Q9Y320 296 aa23.6■■□□□ 1.37
CCDC88B-208ENST00000492980 SOWAHDA6NJG2 315 aa23.59■■□□□ 1.37
CCDC88B-208ENST00000492980 OPLAHO14841 1288 aa23.59■■□□□ 1.37
CCDC88B-208ENST00000492980 FECHP22830 423 aa23.59■■□□□ 1.37
CCDC88B-208ENST00000492980 TRIM14Q14142 442 aa23.59■■□□□ 1.37
CCDC88B-208ENST00000492980 MTF1Q14872 753 aa23.59■■□□□ 1.37
CCDC88B-208ENST00000492980 DYMQ7RTS9 669 aa23.59■■□□□ 1.37
CCDC88B-208ENST00000492980 CDAN1Q8IWY9 1227 aa23.59■■□□□ 1.37
CCDC88B-208ENST00000492980 LRRC27Q9C0I9 530 aa23.59■■□□□ 1.37
CCDC88B-208ENST00000492980 SLC39A2Q9NP94 309 aa23.59■■□□□ 1.37
CCDC88B-208ENST00000492980 MAGEC2Q9UBF1 373 aaPredicted RBP23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms