RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 GTF2A2P52657 109 aa24.54■■□□□ 1.52
SMC4-221ENST00000489573 GSE1Q14687 1217 aa24.54■■□□□ 1.52
SMC4-221ENST00000489573 CALCRLQ16602 461 aa24.54■■□□□ 1.52
SMC4-221ENST00000489573 TNMDQ9H2S6 317 aa24.54■■□□□ 1.52
SMC4-221ENST00000489573 CYP3A7-CYP3A51PA0A087WV96 503 aa24.54■■□□□ 1.52
SMC4-221ENST00000489573 ZNF202O95125 648 aa24.54■■□□□ 1.52
SMC4-221ENST00000489573 CYP3A4P08684 503 aa24.54■■□□□ 1.52
SMC4-221ENST00000489573 CYP3A7P24462 503 aa24.54■■□□□ 1.52
SMC4-221ENST00000489573 STAT3P40763 770 aa24.54■■□□□ 1.52
SMC4-221ENST00000489573 PLS1Q14651 629 aa24.54■■□□□ 1.52
SMC4-221ENST00000489573 MBOAT7Q96N66 472 aa24.54■■□□□ 1.52
SMC4-221ENST00000489573 KCNH3Q9ULD8 1083 aa24.54■■□□□ 1.52
SMC4-221ENST00000489573 ZBTB48P10074 688 aaPredicted RBP24.53■■□□□ 1.52
SMC4-221ENST00000489573 HERVK_113P62684 666 aa24.53■■□□□ 1.52
SMC4-221ENST00000489573 SYMPKQ92797 1274 aaKnown RBP24.53■■□□□ 1.52
SMC4-221ENST00000489573 MS4A4AQ96JQ5 239 aa24.53■■□□□ 1.52
SMC4-221ENST00000489573 MTMR9Q96QG7 549 aa24.53■■□□□ 1.52
SMC4-221ENST00000489573 CIITAP33076 1130 aa24.52■■□□□ 1.52
SMC4-221ENST00000489573 HUNKP57058 714 aa24.52■■□□□ 1.52
SMC4-221ENST00000489573 CAMK4Q16566 473 aa24.52■■□□□ 1.52
SMC4-221ENST00000489573 SPRYD7Q5W111 196 aa24.52■■□□□ 1.52
SMC4-221ENST00000489573 ACAD9Q9H845 621 aa24.52■■□□□ 1.52
SMC4-221ENST00000489573 CTAGE5O15320 804 aa24.51■■□□□ 1.51
SMC4-221ENST00000489573 MKRN3Q13064 507 aaKnown RBP24.51■■□□□ 1.51
SMC4-221ENST00000489573 POTEEQ6S8J3 1075 aa24.51■■□□□ 1.51
SMC4-221ENST00000489573 NSMFQ6X4W1 530 aa24.51■■□□□ 1.51
SMC4-221ENST00000489573 RNF207Q6ZRF8 634 aa24.51■■□□□ 1.51
SMC4-221ENST00000489573 USP49Q70CQ1 688 aa24.51■■□□□ 1.51
SMC4-221ENST00000489573 SYTL5Q8TDW5 730 aaPredicted RBP24.51■■□□□ 1.51
SMC4-221ENST00000489573 EPSTI1Q96J88 318 aa24.51■■□□□ 1.51
SMC4-221ENST00000489573 TIGD1Q96MW7 591 aa24.51■■□□□ 1.51
SMC4-221ENST00000489573 MAF1Q9H063 256 aa24.51■■□□□ 1.51
SMC4-221ENST00000489573 BTBD7Q9P203 1132 aa24.51■■□□□ 1.51
SMC4-221ENST00000489573 COL20A1Q9P218 1284 aa24.51■■□□□ 1.51
SMC4-221ENST00000489573 RABGAP1Q9Y3P9 1069 aa24.51■■□□□ 1.51
SMC4-221ENST00000489573 RPTORQ8N122 1335 aa24.51■■□□□ 1.51
SMC4-221ENST00000489573 PASKQ96RG2 1323 aa24.51■■□□□ 1.51
SMC4-221ENST00000489573 CCL15-CCL14A0A0B4J2E2 113 aa24.5■■□□□ 1.51
SMC4-221ENST00000489573 RPS6P62753 249 aaKnown RBP24.5■■□□□ 1.51
SMC4-221ENST00000489573 CCL15Q16663 113 aa24.5■■□□□ 1.51
SMC4-221ENST00000489573 Q4G0T1 1027 aa24.5■■□□□ 1.51
SMC4-221ENST00000489573 SLC30A10Q6XR72 485 aa24.5■■□□□ 1.51
SMC4-221ENST00000489573 PNMA3Q9UL41 463 aa24.5■■□□□ 1.51
SMC4-221ENST00000489573 RBM43Q6ZSC3 357 aaKnown RBP24.5■■□□□ 1.51
SMC4-221ENST00000489573 RIOX2Q8IUF8 465 aa24.5■■□□□ 1.51
SMC4-221ENST00000489573 CHST13Q8NET6 341 aa24.5■■□□□ 1.51
SMC4-221ENST00000489573 SLC45A1Q9Y2W3 748 aa24.5■■□□□ 1.51
SMC4-221ENST00000489573 ZNF76P36508 570 aa24.49■■□□□ 1.51
SMC4-221ENST00000489573 TXLNAP40222 546 aa24.49■■□□□ 1.51
SMC4-221ENST00000489573 TXKP42681 527 aa24.49■■□□□ 1.51
SMC4-221ENST00000489573 TMEM266Q2M3C6 531 aa24.49■■□□□ 1.51
SMC4-221ENST00000489573 LRSAM1Q6UWE0 723 aa24.49■■□□□ 1.51
SMC4-221ENST00000489573 BRI3BPQ8WY22 251 aa24.49■■□□□ 1.51
SMC4-221ENST00000489573 AK8Q96MA6 479 aa24.49■■□□□ 1.51
SMC4-221ENST00000489573 PAGR1Q9BTK6 254 aa24.49■■□□□ 1.51
SMC4-221ENST00000489573 SPATC1LQ9H0A9 340 aa24.49■■□□□ 1.51
SMC4-221ENST00000489573 CNMDO75829 334 aa24.48■■□□□ 1.51
SMC4-221ENST00000489573 FXR2P51116 673 aaKnown RBP eCLIP24.48■■□□□ 1.512e-10■■■■■ 37.2
SMC4-221ENST00000489573 PRR16Q569H4 304 aa24.48■■□□□ 1.51
SMC4-221ENST00000489573 GTF3C2Q8WUA4 911 aaPredicted RBP24.48■■□□□ 1.51
SMC4-221ENST00000489573 SDF4Q9BRK5 362 aa24.48■■□□□ 1.51
SMC4-221ENST00000489573 KCNMB3Q9NPA1 279 aa24.48■■□□□ 1.51
SMC4-221ENST00000489573 FRMPD4Q14CM0 1322 aa24.48■■□□□ 1.51
SMC4-221ENST00000489573 FAM86B1E9PN63 330 aa24.47■■□□□ 1.51
SMC4-221ENST00000489573 POLR2DO15514 142 aaKnown RBP24.47■■□□□ 1.51
SMC4-221ENST00000489573 MARCH6O60337 910 aa24.47■■□□□ 1.51
SMC4-221ENST00000489573 FAM86B2P0C5J1 330 aa24.47■■□□□ 1.51
SMC4-221ENST00000489573 TECP42680 631 aa24.47■■□□□ 1.51
SMC4-221ENST00000489573 UBXN2AP68543 259 aa24.47■■□□□ 1.51
SMC4-221ENST00000489573 BAATQ14032 418 aaPredicted RBP24.47■■□□□ 1.51
SMC4-221ENST00000489573 ANKRD23Q86SG2 305 aa24.47■■□□□ 1.51
SMC4-221ENST00000489573 SMC1BQ8NDV3 1235 aa24.47■■□□□ 1.51
SMC4-221ENST00000489573 HAS1Q92839 578 aa24.47■■□□□ 1.51
SMC4-221ENST00000489573 LENG9Q96B70 501 aa24.47■■□□□ 1.51
SMC4-221ENST00000489573 FBXO40Q9UH90 709 aa24.47■■□□□ 1.51
SMC4-221ENST00000489573 BTBD19C9JJ37 291 aa24.46■■□□□ 1.51
SMC4-221ENST00000489573 TBX3O15119 743 aa24.46■■□□□ 1.51
SMC4-221ENST00000489573 KRBA2Q6ZNG9 492 aa24.46■■□□□ 1.51
SMC4-221ENST00000489573 CKAP2LQ8IYA6 745 aa24.46■■□□□ 1.51
SMC4-221ENST00000489573 IGSF22Q8N9C0 903 aa24.46■■□□□ 1.51
SMC4-221ENST00000489573 PYM1Q9BRP8 204 aaKnown RBP24.46■■□□□ 1.51
SMC4-221ENST00000489573 RAB34Q9BZG1 259 aa24.46■■□□□ 1.51
SMC4-221ENST00000489573 PDHXO00330 501 aa24.46■■□□□ 1.51
SMC4-221ENST00000489573 PEX10O60683 326 aa24.46■■□□□ 1.51
SMC4-221ENST00000489573 COPB2P35606 906 aa24.46■■□□□ 1.51
SMC4-221ENST00000489573 SAPCD2Q86UD0 394 aa24.46■■□□□ 1.51
SMC4-221ENST00000489573 RASAL3Q86YV0 1011 aa24.46■■□□□ 1.51
SMC4-221ENST00000489573 SLFN12Q8IYM2 578 aa24.46■■□□□ 1.51
SMC4-221ENST00000489573 PDILTQ8N807 584 aa24.46■■□□□ 1.51
SMC4-221ENST00000489573 ETNPPLQ8TBG4 499 aa24.46■■□□□ 1.51
SMC4-221ENST00000489573 TAAR1Q96RJ0 339 aa24.46■■□□□ 1.51
SMC4-221ENST00000489573 TTC12Q9H892 705 aaPredicted RBP24.46■■□□□ 1.51
SMC4-221ENST00000489573 A1CFQ9NQ94 594 aaKnown RBP24.46■■□□□ 1.51
SMC4-221ENST00000489573 RBPJLQ9UBG7 517 aa24.46■■□□□ 1.51
SMC4-221ENST00000489573 IGLV3-22A0A075B6J6 115 aa24.45■■□□□ 1.5
SMC4-221ENST00000489573 A0A087X0B3 334 aa24.45■■□□□ 1.5
SMC4-221ENST00000489573 UBA7P41226 1012 aa24.45■■□□□ 1.5
SMC4-221ENST00000489573 ZNF157P51786 506 aaPredicted RBP24.45■■□□□ 1.5
SMC4-221ENST00000489573 LONRF3Q496Y0 759 aa24.45■■□□□ 1.5
SMC4-221ENST00000489573 CNNM3Q8NE01 707 aa24.45■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms