RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-233	ENST00000489352	EVX2	Q03828	476 aa		13.87	□□□□□ -0.19
HDAC6-233	ENST00000489352	TMEM63B	Q5T3F8	832 aa		13.87	□□□□□ -0.19
HDAC6-233	ENST00000489352	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	13.87	□□□□□ -0.19
HDAC6-233	ENST00000489352	SP7	Q8TDD2	431 aa	Predicted RBP	13.87	□□□□□ -0.19
HDAC6-233	ENST00000489352	HINFP	Q9BQA5	517 aa		13.87	□□□□□ -0.19
HDAC6-233	ENST00000489352	PHF7	Q9BWX1	381 aa	Predicted RBP	13.87	□□□□□ -0.19
HDAC6-233	ENST00000489352	LMAN2L	Q9H0V9	348 aa		13.87	□□□□□ -0.19
HDAC6-233	ENST00000489352	INCENP	Q9NQS7	918 aa		13.87	□□□□□ -0.19
HDAC6-233	ENST00000489352	MAP1B	P46821	2468 aa	Known RBP	13.87	□□□□□ -0.19
HDAC6-233	ENST00000489352	BAZ2A	Q9UIF9	1905 aa	Known RBP	13.86	□□□□□ -0.19
HDAC6-233	ENST00000489352	UPP2	O95045	317 aa		13.86	□□□□□ -0.19
HDAC6-233	ENST00000489352	CSPG5	O95196	566 aa		13.86	□□□□□ -0.19
HDAC6-233	ENST00000489352	PDGFB	P01127	241 aa	Predicted RBP	13.86	□□□□□ -0.19
HDAC6-233	ENST00000489352	CTNNB1	P35222	781 aa		13.86	□□□□□ -0.19
HDAC6-233	ENST00000489352	OAZ1	P54368	228 aa		13.86	□□□□□ -0.19
HDAC6-233	ENST00000489352	CBX2	Q14781	532 aa	Predicted RBP	13.86	□□□□□ -0.19
HDAC6-233	ENST00000489352	PTPN21	Q16825	1174 aa		13.86	□□□□□ -0.19
HDAC6-233	ENST00000489352	DBNDD2	Q9BQY9	259 aa		13.86	□□□□□ -0.19
HDAC6-233	ENST00000489352	C11orf84	Q9BUA3	381 aa	Predicted RBP	13.86	□□□□□ -0.19
HDAC6-233	ENST00000489352	SLC38A10	Q9HBR0	1119 aa		13.86	□□□□□ -0.19
HDAC6-233	ENST00000489352	MYH4	Q9Y623	1939 aa		13.86	□□□□□ -0.19
HDAC6-233	ENST00000489352		F5H6K3	240 aa		13.85	□□□□□ -0.19
HDAC6-233	ENST00000489352	LINC01565	O15544	149 aa		13.85	□□□□□ -0.19
HDAC6-233	ENST00000489352	EYA4	O95677	639 aa		13.85	□□□□□ -0.19
HDAC6-233	ENST00000489352	CYP2D6	P10635	497 aa		13.85	□□□□□ -0.19
HDAC6-233	ENST00000489352	CKB	P12277	381 aa		13.85	□□□□□ -0.19
HDAC6-233	ENST00000489352	CDK8	P49336	464 aa		13.85	□□□□□ -0.19
HDAC6-233	ENST00000489352	RRP1	P56182	461 aa	Known RBP	13.85	□□□□□ -0.19
HDAC6-233	ENST00000489352	KLRC3	Q07444	240 aa		13.85	□□□□□ -0.19
HDAC6-233	ENST00000489352	OS9	Q13438	667 aa	Predicted RBP	13.85	□□□□□ -0.19
HDAC6-233	ENST00000489352	ADAM15	Q13444	863 aa		13.85	□□□□□ -0.19
HDAC6-233	ENST00000489352	GPNMB	Q14956	572 aa		13.85	□□□□□ -0.19
HDAC6-233	ENST00000489352	COL26A1	Q96A83	441 aa		13.85	□□□□□ -0.19
HDAC6-233	ENST00000489352	ZNF512B	Q96KM6	892 aa	Predicted RBP	13.85	□□□□□ -0.19
HDAC6-233	ENST00000489352	A1CF	Q9NQ94	594 aa	Known RBP	13.85	□□□□□ -0.19
HDAC6-233	ENST00000489352	ISY1	Q9ULR0	285 aa	Known RBP	13.85	□□□□□ -0.19
HDAC6-233	ENST00000489352	DDX49	Q9Y6V7	483 aa	Known RBP	13.85	□□□□□ -0.19
HDAC6-233	ENST00000489352	FRYL	O94915	3013 aa		13.84	□□□□□ -0.19
HDAC6-233	ENST00000489352	ANKRD11	Q6UB99	2663 aa	Predicted RBP	13.84	□□□□□ -0.19
HDAC6-233	ENST00000489352	LGR5	O75473	907 aa		13.84	□□□□□ -0.19
HDAC6-233	ENST00000489352	RB1	P06400	928 aa		13.84	□□□□□ -0.19
HDAC6-233	ENST00000489352	GTF2F1	P35269	517 aa	Known RBP eCLIP	13.84	□□□□□ -0.19	3e-6	■■■■□ 25.9
HDAC6-233	ENST00000489352	TCTN1	Q2MV58	587 aa		13.84	□□□□□ -0.19
HDAC6-233	ENST00000489352	SDR42E1	Q8WUS8	393 aa		13.84	□□□□□ -0.19
HDAC6-233	ENST00000489352	CHAMP1	Q96JM3	812 aa		13.84	□□□□□ -0.19
HDAC6-233	ENST00000489352	RIOK1	Q9BRS2	568 aa	Known RBP	13.84	□□□□□ -0.19
HDAC6-233	ENST00000489352	MFSD1	Q9H3U5	465 aa		13.84	□□□□□ -0.19
HDAC6-233	ENST00000489352	DCP1A	Q9NPI6	582 aa	Predicted RBP	13.84	□□□□□ -0.19
HDAC6-233	ENST00000489352	RNF146	Q9NTX7	359 aa		13.84	□□□□□ -0.19
HDAC6-233	ENST00000489352	FEM1B	Q9UK73	627 aa		13.84	□□□□□ -0.19
HDAC6-233	ENST00000489352	RWDD3	Q9Y3V2	267 aa		13.84	□□□□□ -0.19
HDAC6-233	ENST00000489352	MYO10	Q9HD67	2058 aa		13.83	□□□□□ -0.2
HDAC6-233	ENST00000489352	FDX1	P10109	184 aa		13.83	□□□□□ -0.2
HDAC6-233	ENST00000489352	TNNI3K	Q59H18	835 aa		13.83	□□□□□ -0.2
HDAC6-233	ENST00000489352	FIBCD1	Q8N539	461 aa		13.83	□□□□□ -0.2
HDAC6-233	ENST00000489352	TMEM105	Q8N8V8	129 aa		13.83	□□□□□ -0.2
HDAC6-233	ENST00000489352	SMRP1	Q8NCR6	262 aa		13.83	□□□□□ -0.2
HDAC6-233	ENST00000489352	SSH1	Q8WYL5	1049 aa		13.83	□□□□□ -0.2
HDAC6-233	ENST00000489352	DDRGK1	Q96HY6	314 aa		13.83	□□□□□ -0.2
HDAC6-233	ENST00000489352	MSLNL	Q96KJ4	702 aa		13.83	□□□□□ -0.2
HDAC6-233	ENST00000489352	TRERF1	Q96PN7	1200 aa		13.83	□□□□□ -0.2
HDAC6-233	ENST00000489352	USP15	Q9Y4E8	981 aa	Predicted RBP	13.83	□□□□□ -0.2
HDAC6-233	ENST00000489352	FPGT-TNNI3K	V9GXZ4	949 aa		13.83	□□□□□ -0.2
HDAC6-233	ENST00000489352	EMSY	Q7Z589	1322 aa		13.83	□□□□□ -0.2
HDAC6-233	ENST00000489352	CEP250	Q9BV73	2442 aa		13.82	□□□□□ -0.2
HDAC6-233	ENST00000489352	NKRF	O15226	690 aa	Known RBP eCLIP	13.82	□□□□□ -0.2
HDAC6-233	ENST00000489352	GRM6	O15303	877 aa		13.82	□□□□□ -0.2
HDAC6-233	ENST00000489352	LMNA	P02545	664 aa	Known RBP	13.82	□□□□□ -0.2
HDAC6-233	ENST00000489352	GNAI3	P08754	354 aa		13.82	□□□□□ -0.2
HDAC6-233	ENST00000489352	COASY	Q13057	564 aa		13.82	□□□□□ -0.2
HDAC6-233	ENST00000489352	PPP2R5B	Q15173	497 aa		13.82	□□□□□ -0.2
HDAC6-233	ENST00000489352	TKFC	Q3LXA3	575 aa		13.82	□□□□□ -0.2
HDAC6-233	ENST00000489352	ASTL	Q6HA08	431 aa	Predicted RBP	13.82	□□□□□ -0.2
HDAC6-233	ENST00000489352	GDF6	Q6KF10	455 aa	Predicted RBP	13.82	□□□□□ -0.2
HDAC6-233	ENST00000489352	MEIS3	Q99687	375 aa		13.82	□□□□□ -0.2
HDAC6-233	ENST00000489352	GPR108	Q9NPR9	543 aa		13.82	□□□□□ -0.2
HDAC6-233	ENST00000489352	ADD3	Q9UEY8	706 aa	Known RBP	13.82	□□□□□ -0.2
HDAC6-233	ENST00000489352	NDUFB10	O96000	172 aa		13.81	□□□□□ -0.2
HDAC6-233	ENST00000489352	ALAS1	P13196	640 aa		13.81	□□□□□ -0.2
HDAC6-233	ENST00000489352	PDE4B	Q07343	736 aa		13.81	□□□□□ -0.2
HDAC6-233	ENST00000489352	IK	Q13123	557 aa	Predicted RBP	13.81	□□□□□ -0.2
HDAC6-233	ENST00000489352	C7orf31	Q8N865	590 aa		13.81	□□□□□ -0.2
HDAC6-233	ENST00000489352	DBF4B	Q8NFT6	615 aa		13.81	□□□□□ -0.2
HDAC6-233	ENST00000489352	IL17RA	Q96F46	866 aa		13.81	□□□□□ -0.2
HDAC6-233	ENST00000489352	SEMA4A	Q9H3S1	761 aa		13.81	□□□□□ -0.2
HDAC6-233	ENST00000489352	PCDHGC5	Q9Y5F6	944 aa		13.81	□□□□□ -0.2
HDAC6-233	ENST00000489352	SPTBN2	O15020	2390 aa		13.81	□□□□□ -0.2
HDAC6-233	ENST00000489352		A6NJR5	290 aa		13.8	□□□□□ -0.2
HDAC6-233	ENST00000489352	BMPR1A	P36894	532 aa		13.8	□□□□□ -0.2
HDAC6-233	ENST00000489352	RBL2	Q08999	1139 aa		13.8	□□□□□ -0.2
HDAC6-233	ENST00000489352	MTX1	Q13505	466 aa		13.8	□□□□□ -0.2
HDAC6-233	ENST00000489352	ACAP1	Q15027	740 aa		13.8	□□□□□ -0.2
HDAC6-233	ENST00000489352	ZNF618	Q5T7W0	954 aa		13.8	□□□□□ -0.2
HDAC6-233	ENST00000489352	SLC9C2	Q5TAH2	1124 aa		13.8	□□□□□ -0.2
HDAC6-233	ENST00000489352	NSMF	Q6X4W1	530 aa		13.8	□□□□□ -0.2
HDAC6-233	ENST00000489352	UBALD2	Q8IYN6	164 aa		13.8	□□□□□ -0.2
HDAC6-233	ENST00000489352	LRRC47	Q8N1G4	583 aa	Known RBP	13.8	□□□□□ -0.2
HDAC6-233	ENST00000489352	TOP1MT	Q969P6	601 aa		13.8	□□□□□ -0.2
HDAC6-233	ENST00000489352	MPHOSPH6	Q99547	160 aa	Known RBP	13.8	□□□□□ -0.2
HDAC6-233	ENST00000489352	IFIH1	Q9BYX4	1025 aa	Known RBP	13.8	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms