RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 RIPK3Q9Y572 518 aa13.04□□□□□ -0.32
C9orf3-220ENST00000489318 CTDP1Q9Y5B0 961 aaPredicted RBP13.04□□□□□ -0.32
C9orf3-220ENST00000489318 A0A1B0GVL5 298 aa13.03□□□□□ -0.32
C9orf3-220ENST00000489318 TESPA1A2RU30 521 aaPredicted RBP13.03□□□□□ -0.32
C9orf3-220ENST00000489318 CNMDO75829 334 aa13.03□□□□□ -0.32
C9orf3-220ENST00000489318 Q4G0T1 1027 aa13.03□□□□□ -0.32
C9orf3-220ENST00000489318 ANKRD23Q86SG2 305 aa13.03□□□□□ -0.32
C9orf3-220ENST00000489318 RIOX2Q8IUF8 465 aa13.03□□□□□ -0.32
C9orf3-220ENST00000489318 CHST13Q8NET6 341 aa13.03□□□□□ -0.32
C9orf3-220ENST00000489318 LENG9Q96B70 501 aa13.03□□□□□ -0.32
C9orf3-220ENST00000489318 TRERF1Q96PN7 1200 aa13.03□□□□□ -0.32
C9orf3-220ENST00000489318 NUP62CLQ9H1M0 184 aa13.03□□□□□ -0.32
C9orf3-220ENST00000489318 ACAD9Q9H845 621 aa13.03□□□□□ -0.32
C9orf3-220ENST00000489318 KCNMB3Q9NPA1 279 aa13.03□□□□□ -0.32
C9orf3-220ENST00000489318 BTBD7Q9P203 1132 aa13.03□□□□□ -0.32
C9orf3-220ENST00000489318 COL20A1Q9P218 1284 aa13.03□□□□□ -0.32
C9orf3-220ENST00000489318 PNMA3Q9UL41 463 aa13.03□□□□□ -0.32
C9orf3-220ENST00000489318 ZNF236Q9UL36 1845 aa13.03□□□□□ -0.32
C9orf3-220ENST00000489318 PLXNB2O15031 1838 aa13.02□□□□□ -0.32
C9orf3-220ENST00000489318 IGLV3-22A0A075B6J6 115 aa13.02□□□□□ -0.33
C9orf3-220ENST00000489318 VWA3AA6NCI4 1184 aa13.02□□□□□ -0.33
C9orf3-220ENST00000489318 TBX3O15119 743 aa13.02□□□□□ -0.33
C9orf3-220ENST00000489318 KINO60870 393 aaKnown RBP13.02□□□□□ -0.33
C9orf3-220ENST00000489318 LETM1O95202 739 aaPredicted RBP13.02□□□□□ -0.33
C9orf3-220ENST00000489318 OSBPP22059 807 aa13.02□□□□□ -0.33
C9orf3-220ENST00000489318 COPB2P35606 906 aa13.02□□□□□ -0.33
C9orf3-220ENST00000489318 STAT3P40763 770 aa13.02□□□□□ -0.33
C9orf3-220ENST00000489318 FXR2P51116 673 aaKnown RBP eCLIP13.02□□□□□ -0.33
C9orf3-220ENST00000489318 RPS6P62753 249 aaKnown RBP13.02□□□□□ -0.33
C9orf3-220ENST00000489318 SLC30A10Q6XR72 485 aa13.02□□□□□ -0.33
C9orf3-220ENST00000489318 RASAL3Q86YV0 1011 aa13.02□□□□□ -0.33
C9orf3-220ENST00000489318 ELOA2Q8IYF1 753 aaPredicted RBP13.02□□□□□ -0.33
C9orf3-220ENST00000489318 IGSF22Q8N9C0 903 aa13.02□□□□□ -0.33
C9orf3-220ENST00000489318 SMC1BQ8NDV3 1235 aa13.02□□□□□ -0.33
C9orf3-220ENST00000489318 SYTL5Q8TDW5 730 aaPredicted RBP13.02□□□□□ -0.33
C9orf3-220ENST00000489318 AK8Q96MA6 479 aa13.02□□□□□ -0.33
C9orf3-220ENST00000489318 FAM13BQ9NYF5 915 aa13.02□□□□□ -0.33
C9orf3-220ENST00000489318 DDX25Q9UHL0 483 aaKnown RBP13.02□□□□□ -0.33
C9orf3-220ENST00000489318 CCL15-CCL14A0A0B4J2E2 113 aa13.01□□□□□ -0.33
C9orf3-220ENST00000489318 FAM86B1E9PN63 330 aa13.01□□□□□ -0.33
C9orf3-220ENST00000489318 CTAGE5O15320 804 aa13.01□□□□□ -0.33
C9orf3-220ENST00000489318 ZNF202O95125 648 aa13.01□□□□□ -0.33
C9orf3-220ENST00000489318 FAM86B2P0C5J1 330 aa13.01□□□□□ -0.33
C9orf3-220ENST00000489318 SYKP43405 635 aa13.01□□□□□ -0.33
C9orf3-220ENST00000489318 HUNKP57058 714 aa13.01□□□□□ -0.33
C9orf3-220ENST00000489318 CALCRLQ16602 461 aa13.01□□□□□ -0.33
C9orf3-220ENST00000489318 CCL15Q16663 113 aa13.01□□□□□ -0.33
C9orf3-220ENST00000489318 DTHD1Q6ZMT9 781 aa13.01□□□□□ -0.33
C9orf3-220ENST00000489318 RNF207Q6ZRF8 634 aa13.01□□□□□ -0.33
C9orf3-220ENST00000489318 SAPCD2Q86UD0 394 aa13.01□□□□□ -0.33
C9orf3-220ENST00000489318 FCHSD1Q86WN1 690 aa13.01□□□□□ -0.33
C9orf3-220ENST00000489318 ETNPPLQ8TBG4 499 aa13.01□□□□□ -0.33
C9orf3-220ENST00000489318 BRI3BPQ8WY22 251 aa13.01□□□□□ -0.33
C9orf3-220ENST00000489318 SYMPKQ92797 1274 aaKnown RBP13.01□□□□□ -0.33
C9orf3-220ENST00000489318 HAS1Q92839 578 aa13.01□□□□□ -0.33
C9orf3-220ENST00000489318 SPATC1LQ9H0A9 340 aa13.01□□□□□ -0.33
C9orf3-220ENST00000489318 GZF1Q9H116 711 aaPredicted RBP13.01□□□□□ -0.33
C9orf3-220ENST00000489318 HOMER2Q9NSB8 354 aa13.01□□□□□ -0.33
C9orf3-220ENST00000489318 FBXO40Q9UH90 709 aa13.01□□□□□ -0.33
C9orf3-220ENST00000489318 KCNH3Q9ULD8 1083 aa13.01□□□□□ -0.33
C9orf3-220ENST00000489318 SYCE3A1L190 88 aa13□□□□□ -0.33
C9orf3-220ENST00000489318 SETQ01105 290 aaPredicted RBP13□□□□□ -0.33
C9orf3-220ENST00000489318 PCNX4Q63HM2 1172 aa13□□□□□ -0.33
C9orf3-220ENST00000489318 USP49Q70CQ1 688 aa13□□□□□ -0.33
C9orf3-220ENST00000489318 NIPA1Q7RTP0 329 aa13□□□□□ -0.33
C9orf3-220ENST00000489318 HHIPL1Q96JK4 782 aa13□□□□□ -0.33
C9orf3-220ENST00000489318 PYM1Q9BRP8 204 aaKnown RBP13□□□□□ -0.33
C9orf3-220ENST00000489318 FUCA2Q9BTY2 467 aa13□□□□□ -0.33
C9orf3-220ENST00000489318 CCSER1Q9C0I3 900 aa13□□□□□ -0.33
C9orf3-220ENST00000489318 TNMDQ9H2S6 317 aa13□□□□□ -0.33
C9orf3-220ENST00000489318 ZCCHC17Q9NP64 241 aaKnown RBP13□□□□□ -0.33
C9orf3-220ENST00000489318 A1CFQ9NQ94 594 aaKnown RBP13□□□□□ -0.33
C9orf3-220ENST00000489318 CYP39A1Q9NYL5 469 aa13□□□□□ -0.33
C9orf3-220ENST00000489318 ZBTB4Q9P1Z0 1013 aaPredicted RBP13□□□□□ -0.33
C9orf3-220ENST00000489318 RBPJLQ9UBG7 517 aa13□□□□□ -0.33
C9orf3-220ENST00000489318 TLL2Q9Y6L7 1015 aa13□□□□□ -0.33
C9orf3-220ENST00000489318 PFASO15067 1338 aa12.99□□□□□ -0.33
C9orf3-220ENST00000489318 BTBD19C9JJ37 291 aa12.99□□□□□ -0.33
C9orf3-220ENST00000489318 SLC25A27O95847 323 aa12.99□□□□□ -0.33
C9orf3-220ENST00000489318 SLC10A3P09131 477 aa12.99□□□□□ -0.33
C9orf3-220ENST00000489318 BCRP11274 1271 aa12.99□□□□□ -0.33
C9orf3-220ENST00000489318 PDIA5Q14554 519 aa12.99□□□□□ -0.33
C9orf3-220ENST00000489318 GSE1Q14687 1217 aa12.99□□□□□ -0.33
C9orf3-220ENST00000489318 E2F4Q16254 413 aa12.99□□□□□ -0.33
C9orf3-220ENST00000489318 TPRNQ4KMQ1 711 aa12.99□□□□□ -0.33
C9orf3-220ENST00000489318 SPECC1Q5M775 1068 aa12.99□□□□□ -0.33
C9orf3-220ENST00000489318 RGMBQ6NW40 437 aa12.99□□□□□ -0.33
C9orf3-220ENST00000489318 XRRA1Q6P2D8 792 aa12.99□□□□□ -0.33
C9orf3-220ENST00000489318 LRSAM1Q6UWE0 723 aa12.99□□□□□ -0.33
C9orf3-220ENST00000489318 KRBA2Q6ZNG9 492 aa12.99□□□□□ -0.33
C9orf3-220ENST00000489318 SLFN12Q8IYM2 578 aa12.99□□□□□ -0.33
C9orf3-220ENST00000489318 SHCBP1Q8NEM2 672 aa12.99□□□□□ -0.33
C9orf3-220ENST00000489318 EPSTI1Q96J88 318 aa12.99□□□□□ -0.33
C9orf3-220ENST00000489318 MOV10L1Q9BXT6 1211 aaKnown RBP12.99□□□□□ -0.33
C9orf3-220ENST00000489318 TXNRD2Q9NNW7 524 aa12.99□□□□□ -0.33
C9orf3-220ENST00000489318 PXMP2Q9NR77 195 aa12.99□□□□□ -0.33
C9orf3-220ENST00000489318 USP25Q9UHP3 1055 aa12.99□□□□□ -0.33
C9orf3-220ENST00000489318 PLXNA1Q9UIW2 1896 aa12.99□□□□□ -0.33
C9orf3-220ENST00000489318 KIAA1217Q5T5P2 1943 aa12.98□□□□□ -0.33
C9orf3-220ENST00000489318 LOXHD1Q8IVV2 1947 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms