RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 TRAF1Q13077 416 aa18.09■□□□□ 0.49
SYNE1-227ENST00000489156 REXO1Q8N1G1 1221 aaKnown RBP18.09■□□□□ 0.49
SYNE1-227ENST00000489156 FERMT2Q96AC1 680 aa18.09■□□□□ 0.49
SYNE1-227ENST00000489156 TEX13BQ9BXU2 312 aa18.09■□□□□ 0.49
SYNE1-227ENST00000489156 FBXO2Q9UK22 296 aaPredicted RBP18.09■□□□□ 0.49
SYNE1-227ENST00000489156 ADAMTS3O15072 1205 aa18.09■□□□□ 0.49
SYNE1-227ENST00000489156 ALAS1P13196 640 aa18.09■□□□□ 0.49
SYNE1-227ENST00000489156 ADCY7P51828 1080 aa18.09■□□□□ 0.49
SYNE1-227ENST00000489156 NOM1Q5C9Z4 860 aaKnown RBP18.09■□□□□ 0.49
SYNE1-227ENST00000489156 RESP18Q5W5W9 173 aa18.09■□□□□ 0.49
SYNE1-227ENST00000489156 C17orf99Q6UX52 265 aa18.09■□□□□ 0.49
SYNE1-227ENST00000489156 GPRC5AQ8NFJ5 357 aa18.09■□□□□ 0.49
SYNE1-227ENST00000489156 GRPEL1Q9HAV7 217 aa18.09■□□□□ 0.49
SYNE1-227ENST00000489156 RIC8AQ9NPQ8 531 aa18.09■□□□□ 0.49
SYNE1-227ENST00000489156 HOMER2Q9NSB8 354 aa18.09■□□□□ 0.49
SYNE1-227ENST00000489156 DOCK3Q8IZD9 2030 aa18.09■□□□□ 0.49
SYNE1-227ENST00000489156 A0A1B0GVL5 298 aa18.08■□□□□ 0.49
SYNE1-227ENST00000489156 BCRP11274 1271 aa18.08■□□□□ 0.49
SYNE1-227ENST00000489156 NDUFA8P51970 172 aa18.08■□□□□ 0.49
SYNE1-227ENST00000489156 MRPL12P52815 198 aaKnown RBP18.08■□□□□ 0.49
SYNE1-227ENST00000489156 ATP2C1P98194 919 aaPredicted RBP18.08■□□□□ 0.49
SYNE1-227ENST00000489156 NONOQ15233 471 aaKnown RBP eCLIP18.08■□□□□ 0.49
SYNE1-227ENST00000489156 SHC4Q6S5L8 630 aa18.08■□□□□ 0.49
SYNE1-227ENST00000489156 TEX2Q8IWB9 1127 aa18.08■□□□□ 0.49
SYNE1-227ENST00000489156 MOV10L1Q9BXT6 1211 aaKnown RBP18.08■□□□□ 0.49
SYNE1-227ENST00000489156 TSPY26PQ9H489 355 aa18.08■□□□□ 0.49
SYNE1-227ENST00000489156 MORF4L1Q9UBU8 362 aa18.08■□□□□ 0.49
SYNE1-227ENST00000489156 HPSEQ9Y251 543 aa18.08■□□□□ 0.49
SYNE1-227ENST00000489156 MAP2K1Q02750 393 aaPredicted RBP18.07■□□□□ 0.48
SYNE1-227ENST00000489156 FAM110CQ1W6H9 321 aa18.07■□□□□ 0.48
SYNE1-227ENST00000489156 ARL6IP4Q66PJ3 421 aaKnown RBP18.07■□□□□ 0.48
SYNE1-227ENST00000489156 RASGRP4Q8TDF6 673 aa18.07■□□□□ 0.48
SYNE1-227ENST00000489156 CUL5Q93034 780 aa18.07■□□□□ 0.48
SYNE1-227ENST00000489156 TIGD1Q96MW7 591 aa18.07■□□□□ 0.48
SYNE1-227ENST00000489156 ZNFX1Q9P2E3 1918 aaKnown RBP18.07■□□□□ 0.48
SYNE1-227ENST00000489156 PFKFB1P16118 471 aa18.07■□□□□ 0.48
SYNE1-227ENST00000489156 ORC2Q13416 577 aaPredicted RBP18.07■□□□□ 0.48
SYNE1-227ENST00000489156 ZNF174Q15697 407 aa18.07■□□□□ 0.48
SYNE1-227ENST00000489156 CAMK4Q16566 473 aa18.07■□□□□ 0.48
SYNE1-227ENST00000489156 RIOX2Q8IUF8 465 aa18.07■□□□□ 0.48
SYNE1-227ENST00000489156 TRERF1Q96PN7 1200 aa18.07■□□□□ 0.48
SYNE1-227ENST00000489156 PORCNQ9H237 461 aa18.07■□□□□ 0.48
SYNE1-227ENST00000489156 LAD1O00515 517 aa18.06■□□□□ 0.48
SYNE1-227ENST00000489156 ECM2O94769 699 aaPredicted RBP18.06■□□□□ 0.48
SYNE1-227ENST00000489156 ZNF202O95125 648 aa18.06■□□□□ 0.48
SYNE1-227ENST00000489156 PTGDRQ13258 359 aa18.06■□□□□ 0.48
SYNE1-227ENST00000489156 MUM1L1Q5H9M0 696 aa18.06■□□□□ 0.48
SYNE1-227ENST00000489156 MCTP2Q6DN12 878 aa18.06■□□□□ 0.48
SYNE1-227ENST00000489156 NCAPG2Q86XI2 1143 aa18.06■□□□□ 0.48
SYNE1-227ENST00000489156 CLIC6Q96NY7 704 aa18.06■□□□□ 0.48
SYNE1-227ENST00000489156 PSTPIP2Q9H939 334 aa18.06■□□□□ 0.48
SYNE1-227ENST00000489156 CCDC192P0DO97 292 aa18.05■□□□□ 0.48
SYNE1-227ENST00000489156 ERCC3P19447 782 aa18.05■□□□□ 0.48
SYNE1-227ENST00000489156 INF2Q27J81 1249 aa18.05■□□□□ 0.48
SYNE1-227ENST00000489156 FUCA2Q9BTY2 467 aa18.05■□□□□ 0.48
SYNE1-227ENST00000489156 CFHR5Q9BXR6 569 aa18.05■□□□□ 0.48
SYNE1-227ENST00000489156 EFCC1Q9HA90 598 aa18.05■□□□□ 0.48
SYNE1-227ENST00000489156 RNF146Q9NTX7 359 aa18.05■□□□□ 0.48
SYNE1-227ENST00000489156 FAM13BQ9NYF5 915 aa18.05■□□□□ 0.48
SYNE1-227ENST00000489156 PNMA2Q9UL42 364 aa18.05■□□□□ 0.48
SYNE1-227ENST00000489156 ABCB11O95342 1321 aa18.05■□□□□ 0.48
SYNE1-227ENST00000489156 WNT7AO00755 349 aa18.05■□□□□ 0.48
SYNE1-227ENST00000489156 MCM7P33993 719 aa18.05■□□□□ 0.48
SYNE1-227ENST00000489156 SYKP43405 635 aa18.05■□□□□ 0.48
SYNE1-227ENST00000489156 CLK2P49760 499 aaKnown RBP18.05■□□□□ 0.48
SYNE1-227ENST00000489156 CCNA1P78396 465 aa18.05■□□□□ 0.48
SYNE1-227ENST00000489156 WDR78Q5VTH9 848 aa18.05■□□□□ 0.48
SYNE1-227ENST00000489156 NEK8Q86SG6 692 aa18.05■□□□□ 0.48
SYNE1-227ENST00000489156 CLEC4DQ8WXI8 215 aa18.05■□□□□ 0.48
SYNE1-227ENST00000489156 BEGAINQ9BUH8 593 aa18.05■□□□□ 0.48
SYNE1-227ENST00000489156 BIN2Q9UBW5 565 aaPredicted RBP18.05■□□□□ 0.48
SYNE1-227ENST00000489156 MRPL11Q9Y3B7 192 aaKnown RBP18.05■□□□□ 0.48
SYNE1-227ENST00000489156 MGAMO43451 1857 aa18.04■□□□□ 0.48
SYNE1-227ENST00000489156 NFIBO00712 420 aa18.04■□□□□ 0.48
SYNE1-227ENST00000489156 OPLAHO14841 1288 aa18.04■□□□□ 0.48
SYNE1-227ENST00000489156 SLC25A27O95847 323 aa18.04■□□□□ 0.48
SYNE1-227ENST00000489156 ELOA2Q8IYF1 753 aaPredicted RBP18.04■□□□□ 0.48
SYNE1-227ENST00000489156 TBC1D5Q92609 795 aa18.04■□□□□ 0.48
SYNE1-227ENST00000489156 SDF4Q9BRK5 362 aa18.04■□□□□ 0.48
SYNE1-227ENST00000489156 KCNH3Q9ULD8 1083 aa18.04■□□□□ 0.48
SYNE1-227ENST00000489156 TKFCQ3LXA3 575 aa18.03■□□□□ 0.48
SYNE1-227ENST00000489156 C4orf32Q8N8J7 132 aa18.03■□□□□ 0.48
SYNE1-227ENST00000489156 WBP1LQ9NX94 342 aa18.03■□□□□ 0.48
SYNE1-227ENST00000489156 SAGE1Q9NXZ1 904 aa18.03■□□□□ 0.48
SYNE1-227ENST00000489156 TSKSQ9UJT2 592 aa18.03■□□□□ 0.48
SYNE1-227ENST00000489156 XRCC6P12956 609 aaKnown RBP eCLIP18.03■□□□□ 0.48
SYNE1-227ENST00000489156 PRPHP41219 470 aa18.03■□□□□ 0.48
SYNE1-227ENST00000489156 CHST13Q8NET6 341 aa18.03■□□□□ 0.48
SYNE1-227ENST00000489156 TBCKQ8TEA7 893 aa18.03■□□□□ 0.48
SYNE1-227ENST00000489156 CSRNP2Q9H175 543 aa18.03■□□□□ 0.48
SYNE1-227ENST00000489156 ACAD9Q9H845 621 aa18.03■□□□□ 0.48
SYNE1-227ENST00000489156 ZSWIM8A7E2V4 1837 aa18.02■□□□□ 0.48
SYNE1-227ENST00000489156 PLXNB2O15031 1838 aa18.02■□□□□ 0.48
SYNE1-227ENST00000489156 RBBP6Q7Z6E9 1792 aaKnown RBP18.02■□□□□ 0.48
SYNE1-227ENST00000489156 CFBP00751 764 aa18.02■□□□□ 0.48
SYNE1-227ENST00000489156 JAKMIP3Q5VZ66 844 aa18.02■□□□□ 0.48
SYNE1-227ENST00000489156 SHCBP1Q8NEM2 672 aa18.02■□□□□ 0.48
SYNE1-227ENST00000489156 RBSNQ9H1K0 784 aa18.02■□□□□ 0.48
SYNE1-227ENST00000489156 MROH8Q9H579 483 aa18.02■□□□□ 0.48
SYNE1-227ENST00000489156 COPB2P35606 906 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms