RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 STOX1Q6ZVD7 989 aa14.32□□□□□ -0.12
SDC3-204ENST00000487984 RALYLQ86SE5 291 aaKnown RBP14.32□□□□□ -0.12
SDC3-204ENST00000487984 NSUN6Q8TEA1 469 aaKnown RBP14.32□□□□□ -0.12
SDC3-204ENST00000487984 MTMR8Q96EF0 704 aa14.32□□□□□ -0.12
SDC3-204ENST00000487984 ALDH8A1Q9H2A2 487 aaPredicted RBP14.32□□□□□ -0.12
SDC3-204ENST00000487984 TTYH1Q9H313 450 aaPredicted RBP14.32□□□□□ -0.12
SDC3-204ENST00000487984 SEMA6BQ9H3T3 888 aa14.32□□□□□ -0.12
SDC3-204ENST00000487984 HIPK3Q9H422 1215 aa14.32□□□□□ -0.12
SDC3-204ENST00000487984 SENP2Q9HC62 589 aa14.32□□□□□ -0.12
SDC3-204ENST00000487984 POLR3EQ9NVU0 708 aa14.32□□□□□ -0.12
SDC3-204ENST00000487984 UMODL1Q5DID0 1318 aa14.32□□□□□ -0.12
SDC3-204ENST00000487984 OPLAHO14841 1288 aa14.31□□□□□ -0.12
SDC3-204ENST00000487984 PPP1R11O60927 126 aaPredicted RBP14.31□□□□□ -0.12
SDC3-204ENST00000487984 ACRP10323 421 aa14.31□□□□□ -0.12
SDC3-204ENST00000487984 TXNP10599 105 aaKnown RBP14.31□□□□□ -0.12
SDC3-204ENST00000487984 TTLL4Q14679 1199 aa14.31□□□□□ -0.12
SDC3-204ENST00000487984 GRM4Q14833 912 aa14.31□□□□□ -0.12
SDC3-204ENST00000487984 CHST3Q7LGC8 479 aa14.31□□□□□ -0.12
SDC3-204ENST00000487984 NCOA7Q8NI08 942 aa14.31□□□□□ -0.12
SDC3-204ENST00000487984 MAP4K1Q92918 833 aa14.31□□□□□ -0.12
SDC3-204ENST00000487984 RMDN3Q96TC7 470 aa14.31□□□□□ -0.12
SDC3-204ENST00000487984 NOC4LQ9BVI4 516 aaKnown RBP14.31□□□□□ -0.12
SDC3-204ENST00000487984 AMNQ9BXJ7 453 aa14.31□□□□□ -0.12
SDC3-204ENST00000487984 ERICH2A1L162 156 aa14.3□□□□□ -0.12
SDC3-204ENST00000487984 A6NJR5 290 aa14.3□□□□□ -0.12
SDC3-204ENST00000487984 ZBTB5O15062 677 aa14.3□□□□□ -0.12
SDC3-204ENST00000487984 CFBP00751 764 aa14.3□□□□□ -0.12
SDC3-204ENST00000487984 EIF2AK2P19525 551 aaKnown RBP14.3□□□□□ -0.12
SDC3-204ENST00000487984 HSD17B4P51659 736 aa14.3□□□□□ -0.12
SDC3-204ENST00000487984 ANTXR2P58335 489 aa14.3□□□□□ -0.12
SDC3-204ENST00000487984 WTAPQ15007 396 aa14.3□□□□□ -0.12
SDC3-204ENST00000487984 BRDTQ58F21 947 aaPredicted RBP14.3□□□□□ -0.12
SDC3-204ENST00000487984 RASIP1Q5U651 963 aa14.3□□□□□ -0.12
SDC3-204ENST00000487984 CCDC62Q6P9F0 684 aa14.3□□□□□ -0.12
SDC3-204ENST00000487984 PSRC1Q6PGN9 363 aaPredicted RBP14.3□□□□□ -0.12
SDC3-204ENST00000487984 SEPT14Q6ZU15 432 aa14.3□□□□□ -0.12
SDC3-204ENST00000487984 ZNF365Q70YC5 407 aa14.3□□□□□ -0.12
SDC3-204ENST00000487984 IWS1Q96ST2 819 aa14.3□□□□□ -0.12
SDC3-204ENST00000487984 CDX2Q99626 313 aaPredicted RBP14.3□□□□□ -0.12
SDC3-204ENST00000487984 MTG1Q9BT17 334 aaPredicted RBP14.3□□□□□ -0.12
SDC3-204ENST00000487984 GPHNQ9NQX3 736 aaPredicted RBP14.3□□□□□ -0.12
SDC3-204ENST00000487984 TRMT13Q9NUP7 481 aaKnown RBP14.3□□□□□ -0.12
SDC3-204ENST00000487984 RBM8AQ9Y5S9 174 aaKnown RBP14.3□□□□□ -0.12
SDC3-204ENST00000487984 CDH23Q9H251 3354 aa14.3□□□□□ -0.12
SDC3-204ENST00000487984 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.29□□□□□ -0.12
SDC3-204ENST00000487984 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.29□□□□□ -0.12
SDC3-204ENST00000487984 CCL23P55773 120 aa14.29□□□□□ -0.12
SDC3-204ENST00000487984 GHRHRQ02643 423 aa14.29□□□□□ -0.12
SDC3-204ENST00000487984 TROAPQ12815 778 aa14.29□□□□□ -0.12
SDC3-204ENST00000487984 SART3Q15020 963 aaKnown RBP14.29□□□□□ -0.12
SDC3-204ENST00000487984 STXBP2Q15833 593 aa14.29□□□□□ -0.12
SDC3-204ENST00000487984 LY6KQ17RY6 165 aa14.29□□□□□ -0.12
SDC3-204ENST00000487984 NBPF20Q3BBV1 942 aa14.29□□□□□ -0.12
SDC3-204ENST00000487984 TMEM67Q5HYA8 995 aa14.29□□□□□ -0.12
SDC3-204ENST00000487984 ARHGEF16Q5VV41 709 aa14.29□□□□□ -0.12
SDC3-204ENST00000487984 HOMER1Q86YM7 354 aa14.29□□□□□ -0.12
SDC3-204ENST00000487984 MB21D2Q8IYB1 491 aaPredicted RBP14.29□□□□□ -0.12
SDC3-204ENST00000487984 WNT8AQ9H1J5 351 aa14.29□□□□□ -0.12
SDC3-204ENST00000487984 RIOX1Q9H6W3 641 aa14.29□□□□□ -0.12
SDC3-204ENST00000487984 IL23AQ9NPF7 189 aa14.29□□□□□ -0.12
SDC3-204ENST00000487984 PXMP2Q9NR77 195 aa14.29□□□□□ -0.12
SDC3-204ENST00000487984 PCDHA1Q9Y5I3 950 aa14.29□□□□□ -0.12
SDC3-204ENST00000487984 A0A0C4DFX4 3053 aa14.29□□□□□ -0.12
SDC3-204ENST00000487984 TMEM265A0A087WTH1 108 aa14.28□□□□□ -0.12
SDC3-204ENST00000487984 CYTH3O43739 400 aa14.28□□□□□ -0.12
SDC3-204ENST00000487984 NR3C2P08235 984 aa14.28□□□□□ -0.12
SDC3-204ENST00000487984 CYP2C9P11712 490 aa14.28□□□□□ -0.12
SDC3-204ENST00000487984 DNAJB2P25686 324 aa14.28□□□□□ -0.12
SDC3-204ENST00000487984 IGDCC4Q8TDY8 1250 aa14.28□□□□□ -0.12
SDC3-204ENST00000487984 PPP1R13LQ8WUF5 828 aa14.28□□□□□ -0.12
SDC3-204ENST00000487984 PIGSQ96S52 555 aa14.28□□□□□ -0.12
SDC3-204ENST00000487984 LSG1Q9H089 658 aaKnown RBP14.28□□□□□ -0.12
SDC3-204ENST00000487984 KPNA6O60684 536 aa14.27□□□□□ -0.13
SDC3-204ENST00000487984 EIF3JO75822 258 aaKnown RBP14.27□□□□□ -0.13
SDC3-204ENST00000487984 GH1P01241 217 aa14.27□□□□□ -0.13
SDC3-204ENST00000487984 MMP3P08254 477 aa14.27□□□□□ -0.13
SDC3-204ENST00000487984 SUPT20HL2P0C7V6 817 aa14.27□□□□□ -0.13
SDC3-204ENST00000487984 HOXA13P31271 388 aaPredicted RBP14.27□□□□□ -0.13
SDC3-204ENST00000487984 ARHGAP1Q07960 439 aa14.27□□□□□ -0.13
SDC3-204ENST00000487984 FAM47CQ5HY64 1035 aa14.27□□□□□ -0.13
SDC3-204ENST00000487984 NFRKBQ6P4R8 1299 aa14.27□□□□□ -0.13
SDC3-204ENST00000487984 CATIPQ7Z7H3 387 aa14.27□□□□□ -0.13
SDC3-204ENST00000487984 AFG1LQ8WV93 481 aa14.27□□□□□ -0.13
SDC3-204ENST00000487984 HERVK_113Q902F9 699 aa14.27□□□□□ -0.13
SDC3-204ENST00000487984 PNMA6FA0A0J9YX94 578 aa14.26□□□□□ -0.13
SDC3-204ENST00000487984 GRXCR1A8MXD5 290 aa14.26□□□□□ -0.13
SDC3-204ENST00000487984 FGBP02675 491 aa14.26□□□□□ -0.13
SDC3-204ENST00000487984 SKAP1Q86WV1 359 aa14.26□□□□□ -0.13
SDC3-204ENST00000487984 MYLIPQ8WY64 445 aa14.26□□□□□ -0.13
SDC3-204ENST00000487984 TIFAQ96CG3 184 aa14.26□□□□□ -0.13
SDC3-204ENST00000487984 VWCEQ96DN2 955 aa14.26□□□□□ -0.13
SDC3-204ENST00000487984 SCLYQ96I15 445 aa14.26□□□□□ -0.13
SDC3-204ENST00000487984 PDCD2LQ9BRP1 358 aa14.26□□□□□ -0.13
SDC3-204ENST00000487984 ESYT1Q9BSJ8 1104 aa14.26□□□□□ -0.13
SDC3-204ENST00000487984 PBX4Q9BYU1 374 aa14.26□□□□□ -0.13
SDC3-204ENST00000487984 LY9Q9HBG7 655 aa14.26□□□□□ -0.13
SDC3-204ENST00000487984 MAP3K20Q9NYL2 800 aaKnown RBP14.26□□□□□ -0.13
SDC3-204ENST00000487984 CXXC1Q9P0U4 656 aaPredicted RBP14.26□□□□□ -0.13
SDC3-204ENST00000487984 DDX41Q9UJV9 622 aaKnown RBP14.26□□□□□ -0.13
SDC3-204ENST00000487984 MRVI1Q9Y6F6 885 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms