RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 IDEP14735 1019 aa20■□□□□ 0.79
VIM-206ENST00000487938 HNRNPH2P55795 449 aaKnown RBP20■□□□□ 0.79
VIM-206ENST00000487938 PAPD7Q5XG87 772 aaKnown RBP20■□□□□ 0.79
VIM-206ENST00000487938 CENPPQ6IPU0 288 aa20■□□□□ 0.79
VIM-206ENST00000487938 GJA10Q969M2 543 aa20■□□□□ 0.79
VIM-206ENST00000487938 ERGIC2Q96RQ1 377 aa20■□□□□ 0.79
VIM-206ENST00000487938 EIF3CQ99613 913 aaKnown RBP20■□□□□ 0.79
VIM-206ENST00000487938 MTMR4Q9NYA4 1195 aa20■□□□□ 0.79
VIM-206ENST00000487938 EPHB6O15197 1021 aa20■□□□□ 0.79
VIM-206ENST00000487938 ZNF185O15231 689 aa20■□□□□ 0.79
VIM-206ENST00000487938 AKR1B1P15121 316 aa20■□□□□ 0.79
VIM-206ENST00000487938 ADCY7P51828 1080 aa20■□□□□ 0.79
VIM-206ENST00000487938 CASP8Q14790 479 aa20■□□□□ 0.79
VIM-206ENST00000487938 MEX3CQ5U5Q3 659 aaKnown RBP20■□□□□ 0.79
VIM-206ENST00000487938 TAF3Q5VWG9 929 aa20■□□□□ 0.79
VIM-206ENST00000487938 CCDC170Q8IYT3 715 aa20■□□□□ 0.79
VIM-206ENST00000487938 LARP4BQ92615 738 aaKnown RBP20■□□□□ 0.79
VIM-206ENST00000487938 FAM207AQ9NSI2 230 aaPredicted RBP20■□□□□ 0.79
VIM-206ENST00000487938 ZNF263O14978 683 aa19.99■□□□□ 0.79
VIM-206ENST00000487938 GTF2IP78347 998 aa19.99■□□□□ 0.79
VIM-206ENST00000487938 LRRC41Q15345 812 aa19.99■□□□□ 0.79
VIM-206ENST00000487938 UBE2SQ16763 222 aa19.99■□□□□ 0.79
VIM-206ENST00000487938 VWA3BQ502W6 1294 aa19.99■□□□□ 0.79
VIM-206ENST00000487938 DPP8Q6V1X1 898 aaPredicted RBP19.99■□□□□ 0.79
VIM-206ENST00000487938 FAM163AQ96GL9 167 aaPredicted RBP19.99■□□□□ 0.79
VIM-206ENST00000487938 CCDC42Q96M95 316 aa19.99■□□□□ 0.79
VIM-206ENST00000487938 UIMC1Q96RL1 719 aa19.99■□□□□ 0.79
VIM-206ENST00000487938 VPS18Q9P253 973 aa19.99■□□□□ 0.79
VIM-206ENST00000487938 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.99■□□□□ 0.79
VIM-206ENST00000487938 ESYT2A0FGR8 921 aa19.99■□□□□ 0.79
VIM-206ENST00000487938 PPP1R2P41236 205 aa19.99■□□□□ 0.79
VIM-206ENST00000487938 TNNI2P48788 182 aa19.99■□□□□ 0.79
VIM-206ENST00000487938 TMEM266Q2M3C6 531 aa19.99■□□□□ 0.79
VIM-206ENST00000487938 UNC13DQ70J99 1090 aa19.99■□□□□ 0.79
VIM-206ENST00000487938 KCNK18Q7Z418 384 aa19.99■□□□□ 0.79
VIM-206ENST00000487938 GLIS3Q8NEA6 775 aa19.99■□□□□ 0.79
VIM-206ENST00000487938 TBC1D16Q8TBP0 767 aa19.99■□□□□ 0.79
VIM-206ENST00000487938 SMCR8Q8TEV9 937 aaPredicted RBP19.99■□□□□ 0.79
VIM-206ENST00000487938 LRRC4BQ9NT99 713 aa19.99■□□□□ 0.79
VIM-206ENST00000487938 DAGLAQ9Y4D2 1042 aa19.99■□□□□ 0.79
VIM-206ENST00000487938 RIMBP2O15034 1052 aa19.98■□□□□ 0.79
VIM-206ENST00000487938 SERPINB2P05120 415 aa19.98■□□□□ 0.79
VIM-206ENST00000487938 NOVP48745 357 aa19.98■□□□□ 0.79
VIM-206ENST00000487938 FXR2P51116 673 aaKnown RBP eCLIP19.98■□□□□ 0.79
VIM-206ENST00000487938 USP14P54578 494 aa19.98■□□□□ 0.79
VIM-206ENST00000487938 GPS2Q13227 327 aa19.98■□□□□ 0.79
VIM-206ENST00000487938 ZNF662Q6ZS27 426 aa19.98■□□□□ 0.79
VIM-206ENST00000487938 SLF2Q8IX21 1173 aa19.98■□□□□ 0.79
VIM-206ENST00000487938 SNX29Q8TEQ0 813 aa19.98■□□□□ 0.79
VIM-206ENST00000487938 RBM17Q96I25 401 aaKnown RBP19.98■□□□□ 0.79
VIM-206ENST00000487938 GBP3Q9H0R5 595 aa19.98■□□□□ 0.79
VIM-206ENST00000487938 NDST4Q9H3R1 872 aa19.98■□□□□ 0.79
VIM-206ENST00000487938 MMRN2Q9H8L6 949 aa19.98■□□□□ 0.79
VIM-206ENST00000487938 LY75O60449 1722 aa19.98■□□□□ 0.79
VIM-206ENST00000487938 LRRIQ3A6PVS8 624 aaPredicted RBP19.97■□□□□ 0.79
VIM-206ENST00000487938 KIF5AQ12840 1032 aa19.97■□□□□ 0.79
VIM-206ENST00000487938 C2CD5Q86YS7 1000 aa19.97■□□□□ 0.79
VIM-206ENST00000487938 TAF1LQ8IZX4 1826 aa19.97■□□□□ 0.79
VIM-206ENST00000487938 GAKO14976 1311 aa19.97■□□□□ 0.79
VIM-206ENST00000487938 A0A1W2PQJ5 194 aa19.97■□□□□ 0.79
VIM-206ENST00000487938 ZMYND10O75800 440 aa19.97■□□□□ 0.79
VIM-206ENST00000487938 ATP2B2Q01814 1243 aa19.97■□□□□ 0.79
VIM-206ENST00000487938 ECM1Q16610 540 aa19.97■□□□□ 0.79
VIM-206ENST00000487938 CCDC96Q2M329 555 aa19.97■□□□□ 0.79
VIM-206ENST00000487938 CRY2Q49AN0 593 aa19.97■□□□□ 0.79
VIM-206ENST00000487938 COBLL1Q53SF7 1204 aa19.97■□□□□ 0.79
VIM-206ENST00000487938 TTBK2Q6IQ55 1244 aa19.97■□□□□ 0.79
VIM-206ENST00000487938 WDR93Q6P2C0 686 aa19.97■□□□□ 0.79
VIM-206ENST00000487938 EHBP1Q8NDI1 1231 aa19.97■□□□□ 0.79
VIM-206ENST00000487938 RAD54LQ92698 747 aa19.97■□□□□ 0.79
VIM-206ENST00000487938 DDX12PQ92771 950 aa19.97■□□□□ 0.79
VIM-206ENST00000487938 JADE2Q9NQC1 790 aa19.97■□□□□ 0.79
VIM-206ENST00000487938 CALCOCO1Q9P1Z2 691 aa19.97■□□□□ 0.79
VIM-206ENST00000487938 STK17AQ9UEE5 414 aa19.97■□□□□ 0.79
VIM-206ENST00000487938 EIF3JO75822 258 aaKnown RBP19.96■□□□□ 0.79
VIM-206ENST00000487938 LMAN1P49257 510 aa19.96■□□□□ 0.79
VIM-206ENST00000487938 SPA17Q15506 151 aa19.96■□□□□ 0.79
VIM-206ENST00000487938 TXLNBQ8N3L3 684 aa19.96■□□□□ 0.79
VIM-206ENST00000487938 CAGE1Q8TC20 777 aa19.96■□□□□ 0.79
VIM-206ENST00000487938 CCDC102AQ96A19 550 aa19.96■□□□□ 0.79
VIM-206ENST00000487938 JMJD4Q9H9V9 463 aa19.96■□□□□ 0.79
VIM-206ENST00000487938 ARHGAP20Q9P2F6 1191 aa19.96■□□□□ 0.79
VIM-206ENST00000487938 SIK3Q9Y2K2 1263 aa19.96■□□□□ 0.79
VIM-206ENST00000487938 PVALEFA0A1B0GWK0 134 aa19.96■□□□□ 0.79
VIM-206ENST00000487938 PDE2AO00408 941 aaPredicted RBP19.96■□□□□ 0.79
VIM-206ENST00000487938 SLC16A2P36021 539 aa19.96■□□□□ 0.79
VIM-206ENST00000487938 VAV2P52735 878 aa19.96■□□□□ 0.79
VIM-206ENST00000487938 ORC2Q13416 577 aaPredicted RBP19.96■□□□□ 0.79
VIM-206ENST00000487938 ASPRV1Q53RT3 343 aa19.96■□□□□ 0.79
VIM-206ENST00000487938 FIGNQ5HY92 759 aa19.96■□□□□ 0.79
VIM-206ENST00000487938 KRT79Q5XKE5 535 aa19.96■□□□□ 0.79
VIM-206ENST00000487938 ADGRF4Q8IZF3 695 aa19.96■□□□□ 0.79
VIM-206ENST00000487938 CERKQ8TCT0 537 aa19.96■□□□□ 0.79
VIM-206ENST00000487938 HINFPQ9BQA5 517 aa19.96■□□□□ 0.79
VIM-206ENST00000487938 DDX4Q9NQI0 724 aaKnown RBP19.96■□□□□ 0.79
VIM-206ENST00000487938 FAN1Q9Y2M0 1017 aa19.96■□□□□ 0.79
VIM-206ENST00000487938 PPP1R11O60927 126 aaPredicted RBP19.95■□□□□ 0.78
VIM-206ENST00000487938 PHACTR2O75167 634 aa19.95■□□□□ 0.78
VIM-206ENST00000487938 SLURP2P0DP57 97 aa19.95■□□□□ 0.78
VIM-206ENST00000487938 ADRA2BP18089 450 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms