RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 TSGA10IPQ3SY00 556 aa23.68■■□□□ 1.38
HDAC4-209ENST00000487617 CXCL17Q6UXB2 119 aa23.68■■□□□ 1.38
HDAC4-209ENST00000487617 SH3RF1Q7Z6J0 888 aa23.68■■□□□ 1.38
HDAC4-209ENST00000487617 SCFD2Q8WU76 684 aa23.68■■□□□ 1.38
HDAC4-209ENST00000487617 IWS1Q96ST2 819 aa23.68■■□□□ 1.38
HDAC4-209ENST00000487617 LZTS2Q9BRK4 669 aa23.68■■□□□ 1.38
HDAC4-209ENST00000487617 SPZ1Q9BXG8 430 aa23.68■■□□□ 1.38
HDAC4-209ENST00000487617 A0A0U1RQG5 324 aaPredicted RBP23.67■■□□□ 1.38
HDAC4-209ENST00000487617 DCDC2CA8MYV0 355 aa23.67■■□□□ 1.38
HDAC4-209ENST00000487617 CLTBP09497 229 aa23.67■■□□□ 1.38
HDAC4-209ENST00000487617 EIF2AK2P19525 551 aaKnown RBP23.67■■□□□ 1.38
HDAC4-209ENST00000487617 ADCK5Q3MIX3 580 aa23.67■■□□□ 1.38
HDAC4-209ENST00000487617 ANKRD33Q7Z3H0 272 aa23.67■■□□□ 1.38
HDAC4-209ENST00000487617 RAB11FIP4Q86YS3 637 aa23.67■■□□□ 1.38
HDAC4-209ENST00000487617 RRP36Q96EU6 259 aaKnown RBP23.67■■□□□ 1.38
HDAC4-209ENST00000487617 MAP3K20Q9NYL2 800 aaKnown RBP23.67■■□□□ 1.38
HDAC4-209ENST00000487617 TRIM43BA6NCK2 446 aa23.66■■□□□ 1.38
HDAC4-209ENST00000487617 NKRFO15226 690 aaKnown RBP eCLIP23.66■■□□□ 1.38
HDAC4-209ENST00000487617 CABYRO75952 493 aa23.66■■□□□ 1.38
HDAC4-209ENST00000487617 PLEKHA8P1O95397 391 aa23.66■■□□□ 1.38
HDAC4-209ENST00000487617 SMARCA1P28370 1054 aa23.66■■□□□ 1.38
HDAC4-209ENST00000487617 HOXA13P31271 388 aaPredicted RBP23.66■■□□□ 1.38
HDAC4-209ENST00000487617 GHRHRQ02643 423 aa23.66■■□□□ 1.38
HDAC4-209ENST00000487617 STXBP2Q15833 593 aa23.66■■□□□ 1.38
HDAC4-209ENST00000487617 ERICH6BQ5W0A0 696 aa23.66■■□□□ 1.38
HDAC4-209ENST00000487617 SYNE3Q6ZMZ3 975 aa23.66■■□□□ 1.38
HDAC4-209ENST00000487617 DHX32Q7L7V1 743 aaKnown RBP23.66■■□□□ 1.38
HDAC4-209ENST00000487617 SGMS1Q86VZ5 419 aa23.66■■□□□ 1.38
HDAC4-209ENST00000487617 SAMD3Q8N6K7 520 aa23.66■■□□□ 1.38
HDAC4-209ENST00000487617 OR6J1Q8NGC5 347 aa23.66■■□□□ 1.38
HDAC4-209ENST00000487617 TRIM43Q96BQ3 446 aaPredicted RBP23.66■■□□□ 1.38
HDAC4-209ENST00000487617 TCEANC2Q96MN5 208 aa23.66■■□□□ 1.38
HDAC4-209ENST00000487617 TOX2Q96NM4 488 aa23.66■■□□□ 1.38
HDAC4-209ENST00000487617 PXMP2Q9NR77 195 aa23.66■■□□□ 1.38
HDAC4-209ENST00000487617 MROH7Q68CQ1 1323 aa23.65■■□□□ 1.38
HDAC4-209ENST00000487617 GCOM1H8Y6P7 765 aaPredicted RBP23.65■■□□□ 1.38
HDAC4-209ENST00000487617 ARVCFO00192 962 aa23.65■■□□□ 1.38
HDAC4-209ENST00000487617 POLR2MP0CAP2 368 aa23.65■■□□□ 1.38
HDAC4-209ENST00000487617 TXNP10599 105 aaKnown RBP23.65■■□□□ 1.38
HDAC4-209ENST00000487617 TTLL4Q14679 1199 aa23.65■■□□□ 1.38
HDAC4-209ENST00000487617 SEPT14Q6ZU15 432 aa23.65■■□□□ 1.38
HDAC4-209ENST00000487617 TDHQ8IZJ6 230 aa23.65■■□□□ 1.38
HDAC4-209ENST00000487617 SRBD1Q8N5C6 995 aaKnown RBP23.65■■□□□ 1.38
HDAC4-209ENST00000487617 TMEM39AQ9NV64 488 aa23.65■■□□□ 1.38
HDAC4-209ENST00000487617 SEC63Q9UGP8 760 aaKnown RBP23.65■■□□□ 1.38
HDAC4-209ENST00000487617 MYH6P13533 1939 aa23.65■■□□□ 1.38
HDAC4-209ENST00000487617 NR3C2P08235 984 aa23.64■■□□□ 1.37
HDAC4-209ENST00000487617 CDK7P50613 346 aa23.64■■□□□ 1.37
HDAC4-209ENST00000487617 EXOSC10Q01780 885 aaKnown RBP23.64■■□□□ 1.37
HDAC4-209ENST00000487617 FAAP100Q0VG06 881 aa23.64■■□□□ 1.37
HDAC4-209ENST00000487617 MICU3Q86XE3 530 aa23.64■■□□□ 1.37
HDAC4-209ENST00000487617 CMTR1Q8N1G2 835 aaKnown RBP23.64■■□□□ 1.37
HDAC4-209ENST00000487617 FANCBQ8NB91 859 aa23.64■■□□□ 1.37
HDAC4-209ENST00000487617 BADQ92934 168 aa23.64■■□□□ 1.37
HDAC4-209ENST00000487617 REC8O95072 547 aa23.63■■□□□ 1.37
HDAC4-209ENST00000487617 ARIH2O95376 493 aa23.63■■□□□ 1.37
HDAC4-209ENST00000487617 HMGB1P09429 215 aaKnown RBP23.63■■□□□ 1.37
HDAC4-209ENST00000487617 CPT1AP50416 773 aa23.63■■□□□ 1.37
HDAC4-209ENST00000487617 COPS5Q92905 334 aa23.63■■□□□ 1.37
HDAC4-209ENST00000487617 BAZ2BQ9UIF8 2168 aaKnown RBP23.63■■□□□ 1.37
HDAC4-209ENST00000487617 KIAA0355O15063 1070 aa23.62■■□□□ 1.37
HDAC4-209ENST00000487617 EIF3JO75822 258 aaKnown RBP23.62■■□□□ 1.37
HDAC4-209ENST00000487617 RAG1P15918 1043 aa23.62■■□□□ 1.37
HDAC4-209ENST00000487617 HSPA4P34932 840 aa23.62■■□□□ 1.37
HDAC4-209ENST00000487617 BRDTQ58F21 947 aaPredicted RBP23.62■■□□□ 1.37
HDAC4-209ENST00000487617 APOA5Q6Q788 366 aa23.62■■□□□ 1.37
HDAC4-209ENST00000487617 FCHSD1Q86WN1 690 aa23.62■■□□□ 1.37
HDAC4-209ENST00000487617 KCNB2Q92953 911 aa23.62■■□□□ 1.37
HDAC4-209ENST00000487617 PDCD2LQ9BRP1 358 aa23.62■■□□□ 1.37
HDAC4-209ENST00000487617 POLR3EQ9NVU0 708 aa23.62■■□□□ 1.37
HDAC4-209ENST00000487617 DNAH12Q6ZR08 3092 aa23.61■■□□□ 1.37
HDAC4-209ENST00000487617 RANBP2P49792 3224 aaKnown RBP23.61■■□□□ 1.37
HDAC4-209ENST00000487617 MYL3P08590 195 aa23.61■■□□□ 1.37
HDAC4-209ENST00000487617 MYCLP12524 364 aaPredicted RBP23.61■■□□□ 1.37
HDAC4-209ENST00000487617 ITGB8P26012 769 aa23.61■■□□□ 1.37
HDAC4-209ENST00000487617 PSMC6P62333 389 aa23.61■■□□□ 1.37
HDAC4-209ENST00000487617 ITGA7Q13683 1181 aa23.61■■□□□ 1.37
HDAC4-209ENST00000487617 CCDC62Q6P9F0 684 aa23.61■■□□□ 1.37
HDAC4-209ENST00000487617 TMTC3Q6ZXV5 915 aa23.61■■□□□ 1.37
HDAC4-209ENST00000487617 CCDC82Q8N4S0 544 aa23.61■■□□□ 1.37
HDAC4-209ENST00000487617 SNX14Q9Y5W7 946 aa23.61■■□□□ 1.37
HDAC4-209ENST00000487617 SOX1O00570 391 aaPredicted RBP23.6■■□□□ 1.37
HDAC4-209ENST00000487617 TLR3O15455 904 aaKnown RBP23.6■■□□□ 1.37
HDAC4-209ENST00000487617 FGD1P98174 961 aa23.6■■□□□ 1.37
HDAC4-209ENST00000487617 LY6KQ17RY6 165 aa23.6■■□□□ 1.37
HDAC4-209ENST00000487617 FAM126BQ8IXS8 530 aa23.6■■□□□ 1.37
HDAC4-209ENST00000487617 SLC43A3Q8NBI5 491 aa23.6■■□□□ 1.37
HDAC4-209ENST00000487617 JAKMIP1Q96N16 626 aaKnown RBP23.6■■□□□ 1.37
HDAC4-209ENST00000487617 BRPF3Q9ULD4 1205 aa23.6■■□□□ 1.37
HDAC4-209ENST00000487617 ZBTB43O43298 467 aa23.59■■□□□ 1.37
HDAC4-209ENST00000487617 GH1P01241 217 aa23.59■■□□□ 1.37
HDAC4-209ENST00000487617 PURAQ00577 322 aaKnown RBP23.59■■□□□ 1.37
HDAC4-209ENST00000487617 PGM5Q15124 567 aa23.59■■□□□ 1.37
HDAC4-209ENST00000487617 RBM28Q9NW13 759 aaKnown RBP23.59■■□□□ 1.37
HDAC4-209ENST00000487617 GRIN2DO15399 1336 aa23.59■■□□□ 1.37
HDAC4-209ENST00000487617 hCG_1642624A0A1W2PR95 340 aa23.58■■□□□ 1.37
HDAC4-209ENST00000487617 A6NJR5 290 aa23.58■■□□□ 1.37
HDAC4-209ENST00000487617 CPA1P15085 419 aa23.58■■□□□ 1.37
HDAC4-209ENST00000487617 CCND2P30279 289 aa23.58■■□□□ 1.37
HDAC4-209ENST00000487617 RTN1Q16799 776 aa23.58■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms