RNA–Protein interactions for RNA: ENST00000486100.1

PRPF40A-209, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 4

Gene PRPF40A, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-209ENST00000486100 OPLAHO14841 1288 aa21.37■■□□□ 1.01
PRPF40A-209ENST00000486100 HSD17B4P51659 736 aa21.37■■□□□ 1.01
PRPF40A-209ENST00000486100 PPP2R5BQ15173 497 aa21.37■■□□□ 1.01
PRPF40A-209ENST00000486100 GPHNQ9NQX3 736 aaPredicted RBP21.37■■□□□ 1.01
PRPF40A-209ENST00000486100 TBX21Q9UL17 535 aa21.37■■□□□ 1.01
PRPF40A-209ENST00000486100 LCTP09848 1927 aa21.37■■□□□ 1.01
PRPF40A-209ENST00000486100 PNMA6FA0A0J9YX94 578 aa21.36■■□□□ 1.01
PRPF40A-209ENST00000486100 TLR3O15455 904 aaKnown RBP21.36■■□□□ 1.01
PRPF40A-209ENST00000486100 DDAH1O94760 285 aa21.36■■□□□ 1.01
PRPF40A-209ENST00000486100 TXNP10599 105 aaKnown RBP21.36■■□□□ 1.01
PRPF40A-209ENST00000486100 CPT1AP50416 773 aa21.36■■□□□ 1.01
PRPF40A-209ENST00000486100 ITGA7Q13683 1181 aa21.36■■□□□ 1.01
PRPF40A-209ENST00000486100 TTLL4Q14679 1199 aa21.36■■□□□ 1.01
PRPF40A-209ENST00000486100 SHHQ15465 462 aa21.36■■□□□ 1.01
PRPF40A-209ENST00000486100 STXBP2Q15833 593 aa21.36■■□□□ 1.01
PRPF40A-209ENST00000486100 RNF20Q5VTR2 975 aa21.36■■□□□ 1.01
PRPF40A-209ENST00000486100 ARHGEF16Q5VV41 709 aa21.36■■□□□ 1.01
PRPF40A-209ENST00000486100 FAM126BQ8IXS8 530 aa21.36■■□□□ 1.01
PRPF40A-209ENST00000486100 ZNF654Q8IZM8 581 aa21.36■■□□□ 1.01
PRPF40A-209ENST00000486100 OR6J1Q8NGC5 347 aa21.36■■□□□ 1.01
PRPF40A-209ENST00000486100 GRIN2DO15399 1336 aa21.35■■□□□ 1.01
PRPF40A-209ENST00000486100 SH2B2O14492 632 aaPredicted RBP21.35■■□□□ 1.01
PRPF40A-209ENST00000486100 CDC45O75419 566 aa21.35■■□□□ 1.01
PRPF40A-209ENST00000486100 TIMP1P01033 207 aa21.35■■□□□ 1.01
PRPF40A-209ENST00000486100 KIF5BP33176 963 aa21.35■■□□□ 1.01
PRPF40A-209ENST00000486100 LIFRP42702 1097 aa21.35■■□□□ 1.01
PRPF40A-209ENST00000486100 BRDTQ58F21 947 aaPredicted RBP21.35■■□□□ 1.01
PRPF40A-209ENST00000486100 NFXL1Q6ZNB6 911 aa21.35■■□□□ 1.01
PRPF40A-209ENST00000486100 CTCFLQ8NI51 663 aaPredicted RBP21.35■■□□□ 1.01
PRPF40A-209ENST00000486100 POLR3EQ9NVU0 708 aa21.35■■□□□ 1.01
PRPF40A-209ENST00000486100 CCDC69A6NI79 296 aa21.34■■□□□ 1.01
PRPF40A-209ENST00000486100 EIF3JO75822 258 aaKnown RBP21.34■■□□□ 1.01
PRPF40A-209ENST00000486100 CD4P01730 458 aa21.34■■□□□ 1.01
PRPF40A-209ENST00000486100 NR3C2P08235 984 aa21.34■■□□□ 1.01
PRPF40A-209ENST00000486100 SMARCA1P28370 1054 aa21.34■■□□□ 1.01
PRPF40A-209ENST00000486100 COL9A3Q14050 684 aaPredicted RBP21.34■■□□□ 1.01
PRPF40A-209ENST00000486100 C9orf50Q5SZB4 431 aa21.34■■□□□ 1.01
PRPF40A-209ENST00000486100 CCDC62Q6P9F0 684 aa21.34■■□□□ 1.01
PRPF40A-209ENST00000486100 COPS5Q92905 334 aa21.34■■□□□ 1.01
PRPF40A-209ENST00000486100 LZTS2Q9BRK4 669 aa21.34■■□□□ 1.01
PRPF40A-209ENST00000486100 MYL10Q9BUA6 226 aa21.34■■□□□ 1.01
PRPF40A-209ENST00000486100 PXMP2Q9NR77 195 aa21.34■■□□□ 1.01
PRPF40A-209ENST00000486100 LRRC37A2A6NM11 1700 aa21.34■■□□□ 1.01
PRPF40A-209ENST00000486100 SZT2Q5T011 3432 aa21.34■■□□□ 1.01
PRPF40A-209ENST00000486100 A6NJR5 290 aa21.33■■□□□ 1.01
PRPF40A-209ENST00000486100 ARIH2O95376 493 aa21.33■■□□□ 1.01
PRPF40A-209ENST00000486100 EIF2AK2P19525 551 aaKnown RBP21.33■■□□□ 1.01
PRPF40A-209ENST00000486100 GNAQP50148 359 aa21.33■■□□□ 1.01
PRPF40A-209ENST00000486100 PSMC6P62333 389 aa21.33■■□□□ 1.01
PRPF40A-209ENST00000486100 PURAQ00577 322 aaKnown RBP21.33■■□□□ 1.01
PRPF40A-209ENST00000486100 FPGSQ05932 587 aa21.33■■□□□ 1.01
PRPF40A-209ENST00000486100 SEPT14Q6ZU15 432 aa21.33■■□□□ 1.01
PRPF40A-209ENST00000486100 SPZ1Q9BXG8 430 aa21.33■■□□□ 1.01
PRPF40A-209ENST00000486100 LAMA3Q16787 3333 aa21.33■■□□□ 1
PRPF40A-209ENST00000486100 GCOM1H8Y6P7 765 aaPredicted RBP21.32■■□□□ 1
PRPF40A-209ENST00000486100 KPNA6O60684 536 aa21.32■■□□□ 1
PRPF40A-209ENST00000486100 MYL3P08590 195 aa21.32■■□□□ 1
PRPF40A-209ENST00000486100 POLR2MP0CAP2 368 aa21.32■■□□□ 1
PRPF40A-209ENST00000486100 CALM1P0DP23 149 aa21.32■■□□□ 1
PRPF40A-209ENST00000486100 CALM2P0DP24 149 aa21.32■■□□□ 1
PRPF40A-209ENST00000486100 CALM3P0DP25 149 aa21.32■■□□□ 1
PRPF40A-209ENST00000486100 HOXA13P31271 388 aaPredicted RBP21.32■■□□□ 1
PRPF40A-209ENST00000486100 EPHB4P54760 987 aa21.32■■□□□ 1
PRPF40A-209ENST00000486100 TSGA10IPQ3SY00 556 aa21.32■■□□□ 1
PRPF40A-209ENST00000486100 MFSD5Q6N075 450 aa21.32■■□□□ 1
PRPF40A-209ENST00000486100 NEK1Q96PY6 1258 aa21.32■■□□□ 1
PRPF40A-209ENST00000486100 MTG1Q9BT17 334 aaPredicted RBP21.32■■□□□ 1
PRPF40A-209ENST00000486100 LY6KQ17RY6 165 aa21.31■■□□□ 1
PRPF40A-209ENST00000486100 PIBF1Q8WXW3 757 aa21.31■■□□□ 1
PRPF40A-209ENST00000486100 RRP36Q96EU6 259 aaKnown RBP21.31■■□□□ 1
PRPF40A-209ENST00000486100 PDCD2LQ9BRP1 358 aa21.31■■□□□ 1
PRPF40A-209ENST00000486100 LRRC2Q9BYS8 371 aa21.31■■□□□ 1
PRPF40A-209ENST00000486100 SLC12A7Q9Y666 1083 aa21.31■■□□□ 1
PRPF40A-209ENST00000486100 LTBP2Q14767 1821 aa21.31■■□□□ 1
PRPF40A-209ENST00000486100 VSIG10LQ86VR7 867 aa21.3■■□□□ 1
PRPF40A-209ENST00000486100 SGMS1Q86VZ5 419 aa21.3■■□□□ 1
PRPF40A-209ENST00000486100 DDX41Q9UJV9 622 aaKnown RBP21.3■■□□□ 1
PRPF40A-209ENST00000486100 GH1P01241 217 aa21.29■■□□□ 1
PRPF40A-209ENST00000486100 EXOSC10Q01780 885 aaKnown RBP21.29■■□□□ 1
PRPF40A-209ENST00000486100 PGM5Q15124 567 aa21.29■■□□□ 1
PRPF40A-209ENST00000486100 RASEFQ8IZ41 740 aa21.29■■□□□ 1
PRPF40A-209ENST00000486100 TMEM199Q8N511 208 aa21.29■■□□□ 1
PRPF40A-209ENST00000486100 SRBD1Q8N5C6 995 aaKnown RBP21.29■■□□□ 1
PRPF40A-209ENST00000486100 DEFB123Q8N688 67 aa21.29■■□□□ 1
PRPF40A-209ENST00000486100 TRPV6Q9H1D0 765 aa21.29■■□□□ 1
PRPF40A-209ENST00000486100 ALDH8A1Q9H2A2 487 aaPredicted RBP21.29■■□□□ 1
PRPF40A-209ENST00000486100 B4GALT4O60513 344 aa21.28■■□□□ 1
PRPF40A-209ENST00000486100 PLEKHA8P1O95397 391 aa21.28■■□□□ 1
PRPF40A-209ENST00000486100 MYCLP12524 364 aaPredicted RBP21.28■■□□□ 1
PRPF40A-209ENST00000486100 RXRAP19793 462 aa21.28■■□□□ 1
PRPF40A-209ENST00000486100 ARHGAP1Q07960 439 aa21.28■■□□□ 1
PRPF40A-209ENST00000486100 PPIGQ13427 754 aaKnown RBP eCLIP21.28■■□□□ 11e-9■■□□□ 12.2
PRPF40A-209ENST00000486100 DHX32Q7L7V1 743 aaKnown RBP21.28■■□□□ 1
PRPF40A-209ENST00000486100 FCHSD1Q86WN1 690 aa21.28■■□□□ 1
PRPF40A-209ENST00000486100 FANCBQ8NB91 859 aa21.28■■□□□ 1
PRPF40A-209ENST00000486100 AFG1LQ8WV93 481 aa21.28■■□□□ 1
PRPF40A-209ENST00000486100 PPP1R12CQ9BZL4 782 aa21.28■■□□□ 1
PRPF40A-209ENST00000486100 SEC63Q9UGP8 760 aaKnown RBP21.28■■□□□ 1
PRPF40A-209ENST00000486100 MRVI1Q9Y6F6 885 aa21.28■■□□□ 1
PRPF40A-209ENST00000486100 RGS20O76081 388 aa21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms