RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 A0A1W2PQU0 124 aa6.3□□□□□ -1.4
VPS41-213ENST00000485955 NTRK1P04629 796 aa6.3□□□□□ -1.4
VPS41-213ENST00000485955 SCG5P05408 212 aa6.3□□□□□ -1.4
VPS41-213ENST00000485955 SNRPB2P08579 225 aaKnown RBP6.3□□□□□ -1.4
VPS41-213ENST00000485955 LCE4AQ5TA78 99 aa6.3□□□□□ -1.4
VPS41-213ENST00000485955 FAM129CQ86XR2 697 aa6.3□□□□□ -1.4
VPS41-213ENST00000485955 TMEM145Q8NBT3 493 aa6.3□□□□□ -1.4
VPS41-213ENST00000485955 BTG4Q9NY30 223 aa6.3□□□□□ -1.4
VPS41-213ENST00000485955 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.3□□□□□ -1.4
VPS41-213ENST00000485955 DBR1Q9UK59 544 aaKnown RBP6.3□□□□□ -1.4
VPS41-213ENST00000485955 SIT1Q9Y3P8 196 aa6.3□□□□□ -1.4
VPS41-213ENST00000485955 ATF2P15336 505 aa6.29□□□□□ -1.4
VPS41-213ENST00000485955 KCNJ6P48051 423 aa6.29□□□□□ -1.4
VPS41-213ENST00000485955 GFRA1P56159 465 aa6.29□□□□□ -1.4
VPS41-213ENST00000485955 PPP2R2AP63151 447 aa6.29□□□□□ -1.4
VPS41-213ENST00000485955 RAB33AQ14088 237 aa6.29□□□□□ -1.4
VPS41-213ENST00000485955 WWC2Q6AWC2 1192 aa6.29□□□□□ -1.4
VPS41-213ENST00000485955 CNKSR3Q6P9H4 555 aa6.29□□□□□ -1.4
VPS41-213ENST00000485955 TEX2Q8IWB9 1127 aa6.29□□□□□ -1.4
VPS41-213ENST00000485955 C1orf159Q96HA4 380 aa6.29□□□□□ -1.4
VPS41-213ENST00000485955 MARCH2Q9P0N8 246 aa6.29□□□□□ -1.4
VPS41-213ENST00000485955 ASGR2P07307 311 aa6.28□□□□□ -1.4
VPS41-213ENST00000485955 LCP1P13796 627 aa6.28□□□□□ -1.4
VPS41-213ENST00000485955 MC3RP41968 323 aa6.28□□□□□ -1.4
VPS41-213ENST00000485955 LIMS1P48059 325 aa6.28□□□□□ -1.4
VPS41-213ENST00000485955 VMACQ2NL98 169 aa6.28□□□□□ -1.4
VPS41-213ENST00000485955 CABP7Q86V35 215 aa6.28□□□□□ -1.4
VPS41-213ENST00000485955 RCBTB1Q8NDN9 531 aa6.28□□□□□ -1.4
VPS41-213ENST00000485955 DIO2Q92813 273 aa6.28□□□□□ -1.4
VPS41-213ENST00000485955 CCDC140Q96MF4 163 aa6.28□□□□□ -1.4
VPS41-213ENST00000485955 EPN3Q9H201 632 aa6.28□□□□□ -1.4
VPS41-213ENST00000485955 FBXL7Q9UJT9 491 aa6.28□□□□□ -1.4
VPS41-213ENST00000485955 C22orf46C9J442 243 aa6.27□□□□□ -1.41
VPS41-213ENST00000485955 RFXAPO00287 272 aa6.27□□□□□ -1.41
VPS41-213ENST00000485955 MEFVO15553 781 aaPredicted RBP6.27□□□□□ -1.41
VPS41-213ENST00000485955 CPP00450 1065 aa6.27□□□□□ -1.41
VPS41-213ENST00000485955 FPR2P25090 351 aa6.27□□□□□ -1.41
VPS41-213ENST00000485955 SLC35F1Q5T1Q4 408 aa6.27□□□□□ -1.41
VPS41-213ENST00000485955 TCERG1LQ5VWI1 586 aa6.27□□□□□ -1.41
VPS41-213ENST00000485955 E4F1Q66K89 784 aaPredicted RBP6.27□□□□□ -1.41
VPS41-213ENST00000485955 IQCEQ6IPM2 695 aa6.27□□□□□ -1.41
VPS41-213ENST00000485955 NETO2Q8NC67 525 aa6.27□□□□□ -1.41
VPS41-213ENST00000485955 TSPAN17Q96FV3 270 aa6.27□□□□□ -1.41
VPS41-213ENST00000485955 PWWP2AQ96N64 755 aa6.27□□□□□ -1.41
VPS41-213ENST00000485955 TIMM13Q9Y5L4 95 aaPredicted RBP6.27□□□□□ -1.41
VPS41-213ENST00000485955 STK10O94804 968 aaKnown RBP6.26□□□□□ -1.41
VPS41-213ENST00000485955 PMLP29590 882 aa6.26□□□□□ -1.41
VPS41-213ENST00000485955 BCL6P41182 706 aa6.26□□□□□ -1.41
VPS41-213ENST00000485955 AFF3P51826 1226 aaKnown RBP6.26□□□□□ -1.41
VPS41-213ENST00000485955 FOXO4P98177 505 aa6.26□□□□□ -1.41
VPS41-213ENST00000485955 TESK1Q15569 626 aa6.26□□□□□ -1.41
VPS41-213ENST00000485955 TARBP2Q15633 366 aaKnown RBP6.26□□□□□ -1.41
VPS41-213ENST00000485955 CEP68Q76N32 757 aa6.26□□□□□ -1.41
VPS41-213ENST00000485955 NLRP10Q86W26 655 aa6.26□□□□□ -1.41
VPS41-213ENST00000485955 PPIL6Q8IXY8 311 aa6.26□□□□□ -1.41
VPS41-213ENST00000485955 ALG3Q92685 438 aa6.26□□□□□ -1.41
VPS41-213ENST00000485955 PEX11GQ96HA9 241 aa6.26□□□□□ -1.41
VPS41-213ENST00000485955 IER2Q9BTL4 223 aa6.26□□□□□ -1.41
VPS41-213ENST00000485955 TANGO6Q9C0B7 1094 aa6.26□□□□□ -1.41
VPS41-213ENST00000485955 AGRPO00253 132 aa6.25□□□□□ -1.41
VPS41-213ENST00000485955 SGSM2O43147 1006 aa6.25□□□□□ -1.41
VPS41-213ENST00000485955 DLX3O60479 287 aa6.25□□□□□ -1.41
VPS41-213ENST00000485955 PLA2G1BP04054 148 aaKnown RBP6.25□□□□□ -1.41
VPS41-213ENST00000485955 NCAM1P13591 858 aa6.25□□□□□ -1.41
VPS41-213ENST00000485955 PFKLP17858 780 aa6.25□□□□□ -1.41
VPS41-213ENST00000485955 BMP7P18075 431 aa6.25□□□□□ -1.41
VPS41-213ENST00000485955 RPL11P62913 178 aaKnown RBP6.25□□□□□ -1.41
VPS41-213ENST00000485955 ACBD5Q5T8D3 534 aaPredicted RBP6.25□□□□□ -1.41
VPS41-213ENST00000485955 ARHGEF4Q9NR80 690 aa6.25□□□□□ -1.41
VPS41-213ENST00000485955 PCDHA2Q9Y5H9 948 aa6.25□□□□□ -1.41
VPS41-213ENST00000485955 TRIM13O60858 407 aa6.24□□□□□ -1.41
VPS41-213ENST00000485955 ATP2B1P20020 1258 aa6.24□□□□□ -1.41
VPS41-213ENST00000485955 LTBRP36941 435 aa6.24□□□□□ -1.41
VPS41-213ENST00000485955 SLC9A5Q14940 896 aa6.24□□□□□ -1.41
VPS41-213ENST00000485955 TMEM151BQ8IW70 566 aa6.24□□□□□ -1.41
VPS41-213ENST00000485955 Q8N1Y9 231 aa6.24□□□□□ -1.41
VPS41-213ENST00000485955 MARCH10Q8NA82 808 aaPredicted RBP6.24□□□□□ -1.41
VPS41-213ENST00000485955 TRMT2BQ96GJ1 504 aaKnown RBP6.24□□□□□ -1.41
VPS41-213ENST00000485955 TRIM55Q9BYV6 548 aa6.24□□□□□ -1.41
VPS41-213ENST00000485955 RNF38Q9H0F5 515 aa6.24□□□□□ -1.41
VPS41-213ENST00000485955 NUDT5Q9UKK9 219 aa6.24□□□□□ -1.41
VPS41-213ENST00000485955 MSRB2Q9Y3D2 182 aa6.24□□□□□ -1.41
VPS41-213ENST00000485955 NPFFR2Q9Y5X5 522 aa6.24□□□□□ -1.41
VPS41-213ENST00000485955 X6R8D5 127 aa6.24□□□□□ -1.41
VPS41-213ENST00000485955 FFAR3O14843 346 aa6.23□□□□□ -1.41
VPS41-213ENST00000485955 ZBTB7AO95365 584 aa6.23□□□□□ -1.41
VPS41-213ENST00000485955 INHBBP09529 407 aa6.23□□□□□ -1.41
VPS41-213ENST00000485955 MAP4K2Q12851 820 aa6.23□□□□□ -1.41
VPS41-213ENST00000485955 KCNAB2Q13303 367 aa6.23□□□□□ -1.41
VPS41-213ENST00000485955 HSP90AA2PQ14568 343 aaPredicted RBP6.23□□□□□ -1.41
VPS41-213ENST00000485955 YOD1Q5VVQ6 348 aaPredicted RBP6.23□□□□□ -1.41
VPS41-213ENST00000485955 TTLL10Q6ZVT0 673 aa6.23□□□□□ -1.41
VPS41-213ENST00000485955 SPATC1Q76KD6 591 aa6.23□□□□□ -1.41
VPS41-213ENST00000485955 CKAP2LQ8IYA6 745 aa6.23□□□□□ -1.41
VPS41-213ENST00000485955 TP53I13Q8NBR0 393 aaPredicted RBP6.23□□□□□ -1.41
VPS41-213ENST00000485955 ST13P5Q8NFI4 369 aaPredicted RBP6.23□□□□□ -1.41
VPS41-213ENST00000485955 FNIP1Q8TF40 1166 aa6.23□□□□□ -1.41
VPS41-213ENST00000485955 KCTD13Q8WZ19 329 aa6.23□□□□□ -1.41
VPS41-213ENST00000485955 OSBP2Q969R2 916 aa6.23□□□□□ -1.41
VPS41-213ENST00000485955 SGSM3Q96HU1 749 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms