RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 ZEB2O60315 1214 aa19.66■□□□□ 0.74
VIM-205ENST00000485947 LARGE1O95461 756 aa19.66■□□□□ 0.74
VIM-205ENST00000485947 RCAN1P53805 252 aa19.66■□□□□ 0.74
VIM-205ENST00000485947 GNASQ5JWF2 1037 aa19.66■□□□□ 0.74
VIM-205ENST00000485947 GPR153Q6NV75 609 aa19.66■□□□□ 0.74
VIM-205ENST00000485947 FBXO11Q86XK2 927 aa19.66■□□□□ 0.74
VIM-205ENST00000485947 TDHQ8IZJ6 230 aa19.66■□□□□ 0.74
VIM-205ENST00000485947 FERMT2Q96AC1 680 aa19.66■□□□□ 0.74
VIM-205ENST00000485947 MTMR8Q96EF0 704 aa19.66■□□□□ 0.74
VIM-205ENST00000485947 AMNQ9BXJ7 453 aa19.66■□□□□ 0.74
VIM-205ENST00000485947 UBE2OQ9C0C9 1292 aaKnown RBP19.66■□□□□ 0.74
VIM-205ENST00000485947 AP5M1Q9H0R1 490 aa19.66■□□□□ 0.74
VIM-205ENST00000485947 JMJD4Q9H9V9 463 aa19.66■□□□□ 0.74
VIM-205ENST00000485947 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.66■□□□□ 0.74
VIM-205ENST00000485947 KLF18A0A0U1RQI7 1052 aa19.65■□□□□ 0.74
VIM-205ENST00000485947 RBM47A0AV96 593 aaKnown RBP19.65■□□□□ 0.74
VIM-205ENST00000485947 CCDC69A6NI79 296 aa19.65■□□□□ 0.74
VIM-205ENST00000485947 NKRFO15226 690 aaKnown RBP eCLIP19.65■□□□□ 0.74
VIM-205ENST00000485947 PFKFB2O60825 505 aa19.65■□□□□ 0.74
VIM-205ENST00000485947 EDNRBP24530 442 aa19.65■□□□□ 0.74
VIM-205ENST00000485947 QRICH1Q2TAL8 776 aa19.65■□□□□ 0.74
VIM-205ENST00000485947 LRIT3Q3SXY7 679 aa19.65■□□□□ 0.74
VIM-205ENST00000485947 TRIM60Q495X7 471 aa19.65■□□□□ 0.74
VIM-205ENST00000485947 TAPT1Q6NXT6 567 aa19.65■□□□□ 0.74
VIM-205ENST00000485947 LARP6Q9BRS8 491 aaKnown RBP19.65■□□□□ 0.74
VIM-205ENST00000485947 SLKQ9H2G2 1235 aaPredicted RBP19.65■□□□□ 0.74
VIM-205ENST00000485947 MAD2L2Q9UI95 211 aa19.65■□□□□ 0.74
VIM-205ENST00000485947 DCDC2CA8MYV0 355 aa19.64■□□□□ 0.73
VIM-205ENST00000485947 DHX16O60231 1041 aaKnown RBP19.64■□□□□ 0.73
VIM-205ENST00000485947 ASGR1P07306 291 aa19.64■□□□□ 0.73
VIM-205ENST00000485947 CALML3P27482 149 aa19.64■□□□□ 0.73
VIM-205ENST00000485947 GHRHRQ02643 423 aa19.64■□□□□ 0.73
VIM-205ENST00000485947 TLE2Q04725 743 aa19.64■□□□□ 0.73
VIM-205ENST00000485947 TROAPQ12815 778 aa19.64■□□□□ 0.73
VIM-205ENST00000485947 GRM4Q14833 912 aa19.64■□□□□ 0.73
VIM-205ENST00000485947 DUSP28Q4G0W2 176 aa19.64■□□□□ 0.73
VIM-205ENST00000485947 SYNE3Q6ZMZ3 975 aa19.64■□□□□ 0.73
VIM-205ENST00000485947 NFXL1Q6ZNB6 911 aa19.64■□□□□ 0.73
VIM-205ENST00000485947 CATIPQ7Z7H3 387 aa19.64■□□□□ 0.73
VIM-205ENST00000485947 GTF3C6Q969F1 213 aa19.64■□□□□ 0.73
VIM-205ENST00000485947 LENG1Q96BZ8 264 aaPredicted RBP19.64■□□□□ 0.73
VIM-205ENST00000485947 IWS1Q96ST2 819 aa19.64■□□□□ 0.73
VIM-205ENST00000485947 GPHNQ9NQX3 736 aaPredicted RBP19.64■□□□□ 0.73
VIM-205ENST00000485947 NID2Q14112 1375 aa19.64■□□□□ 0.73
VIM-205ENST00000485947 ZBTB5O15062 677 aa19.63■□□□□ 0.73
VIM-205ENST00000485947 ADCY6O43306 1168 aa19.63■□□□□ 0.73
VIM-205ENST00000485947 CLTBP09497 229 aa19.63■□□□□ 0.73
VIM-205ENST00000485947 SMPD1P17405 629 aa19.63■□□□□ 0.73
VIM-205ENST00000485947 SMARCA1P28370 1054 aa19.63■□□□□ 0.73
VIM-205ENST00000485947 PDIA3P30101 505 aaKnown RBP19.63■□□□□ 0.73
VIM-205ENST00000485947 PDE4DQ08499 809 aa19.63■□□□□ 0.73
VIM-205ENST00000485947 USH1GQ495M9 461 aa19.63■□□□□ 0.73
VIM-205ENST00000485947 APOA5Q6Q788 366 aa19.63■□□□□ 0.73
VIM-205ENST00000485947 SLC30A10Q6XR72 485 aa19.63■□□□□ 0.73
VIM-205ENST00000485947 TLK2Q86UE8 772 aa19.63■□□□□ 0.73
VIM-205ENST00000485947 CCDC83Q8IWF9 413 aa19.63■□□□□ 0.73
VIM-205ENST00000485947 NSUN6Q8TEA1 469 aaKnown RBP19.63■□□□□ 0.73
VIM-205ENST00000485947 RIOX1Q9H6W3 641 aa19.63■□□□□ 0.73
VIM-205ENST00000485947 PDLIM7Q9NR12 457 aa19.63■□□□□ 0.73
VIM-205ENST00000485947 BRPF3Q9ULD4 1205 aa19.63■□□□□ 0.73
VIM-205ENST00000485947 VCANP13611 3396 aa19.63■□□□□ 0.73
VIM-205ENST00000485947 A0A0U1RQG5 324 aaPredicted RBP19.62■□□□□ 0.73
VIM-205ENST00000485947 GOLGA8BA8MQT2 603 aa19.62■□□□□ 0.73
VIM-205ENST00000485947 KIAA0355O15063 1070 aa19.62■□□□□ 0.73
VIM-205ENST00000485947 CTAGE5O15320 804 aa19.62■□□□□ 0.73
VIM-205ENST00000485947 DDAH1O94760 285 aa19.62■□□□□ 0.73
VIM-205ENST00000485947 CDK7P50613 346 aa19.62■□□□□ 0.73
VIM-205ENST00000485947 FSCN1Q16658 493 aaKnown RBP19.62■□□□□ 0.73
VIM-205ENST00000485947 FBXO16Q8IX29 292 aaPredicted RBP19.62■□□□□ 0.73
VIM-205ENST00000485947 STAG2Q8N3U4 1231 aa19.62■□□□□ 0.73
VIM-205ENST00000485947 SCFD2Q8WU76 684 aa19.62■□□□□ 0.73
VIM-205ENST00000485947 LZTS2Q9BRK4 669 aa19.62■□□□□ 0.73
VIM-205ENST00000485947 COL25A1Q9BXS0 654 aaPredicted RBP19.62■□□□□ 0.73
VIM-205ENST00000485947 CPVLQ9H3G5 476 aa19.62■□□□□ 0.73
VIM-205ENST00000485947 STXBP5LQ9Y2K9 1186 aa19.62■□□□□ 0.73
VIM-205ENST00000485947 SLC12A7Q9Y666 1083 aa19.62■□□□□ 0.73
VIM-205ENST00000485947 MCM3APO60318 1980 aa19.61■□□□□ 0.73
VIM-205ENST00000485947 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.61■□□□□ 0.73
VIM-205ENST00000485947 MYADML2A6NDP7 307 aa19.61■□□□□ 0.73
VIM-205ENST00000485947 ZBTB43O43298 467 aa19.61■□□□□ 0.73
VIM-205ENST00000485947 KIF5BP33176 963 aa19.61■□□□□ 0.73
VIM-205ENST00000485947 STK3Q13188 491 aa19.61■□□□□ 0.73
VIM-205ENST00000485947 PPP2R5BQ15173 497 aa19.61■□□□□ 0.73
VIM-205ENST00000485947 BRDTQ58F21 947 aaPredicted RBP19.61■□□□□ 0.73
VIM-205ENST00000485947 SPRYD3Q8NCJ5 442 aa19.61■□□□□ 0.73
VIM-205ENST00000485947 LLPHQ9BRT6 129 aaKnown RBP19.61■□□□□ 0.73
VIM-205ENST00000485947 WDR11Q9BZH6 1224 aa19.61■□□□□ 0.73
VIM-205ENST00000485947 VAT1LQ9HCJ6 419 aa19.61■□□□□ 0.73
VIM-205ENST00000485947 NAP1L2Q9ULW6 460 aaPredicted RBP19.61■□□□□ 0.73
VIM-205ENST00000485947 ARVCFO00192 962 aa19.6■□□□□ 0.73
VIM-205ENST00000485947 DYNC1LI2O43237 492 aaPredicted RBP19.6■□□□□ 0.73
VIM-205ENST00000485947 CALM1P0DP23 149 aa19.6■□□□□ 0.73
VIM-205ENST00000485947 CALM2P0DP24 149 aa19.6■□□□□ 0.73
VIM-205ENST00000485947 CALM3P0DP25 149 aa19.6■□□□□ 0.73
VIM-205ENST00000485947 GNAQP50148 359 aa19.6■□□□□ 0.73
VIM-205ENST00000485947 MDM2Q00987 491 aaPredicted RBP19.6■□□□□ 0.73
VIM-205ENST00000485947 ST3GAL1Q11201 340 aa19.6■□□□□ 0.73
VIM-205ENST00000485947 SCRN1Q12765 414 aa19.6■□□□□ 0.73
VIM-205ENST00000485947 EEPD1Q7L9B9 569 aa19.6■□□□□ 0.73
VIM-205ENST00000485947 ZNF654Q8IZM8 581 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms