RNA–Protein interactions for RNA: ENST00000480598.1

LIMS4-202, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best)

Gene LIMS4, Length 679 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-202ENST00000480598 TIMP1P01033 207 aa17.31■□□□□ 0.36
LIMS4-202ENST00000480598 MRPL12P52815 198 aaKnown RBP17.31■□□□□ 0.36
LIMS4-202ENST00000480598 FPGSQ05932 587 aa17.31■□□□□ 0.36
LIMS4-202ENST00000480598 CREB3L3Q68CJ9 461 aa17.31■□□□□ 0.36
LIMS4-202ENST00000480598 GPR153Q6NV75 609 aa17.31■□□□□ 0.36
LIMS4-202ENST00000480598 CATIPQ7Z7H3 387 aa17.31■□□□□ 0.36
LIMS4-202ENST00000480598 DEFB123Q8N688 67 aa17.31■□□□□ 0.36
LIMS4-202ENST00000480598 NSUN6Q8TEA1 469 aaKnown RBP17.31■□□□□ 0.36
LIMS4-202ENST00000480598 MYL10Q9BUA6 226 aa17.31■□□□□ 0.36
LIMS4-202ENST00000480598 MAF1Q9H063 256 aa17.31■□□□□ 0.36
LIMS4-202ENST00000480598 LY9Q9HBG7 655 aa17.31■□□□□ 0.36
LIMS4-202ENST00000480598 PCDHA1Q9Y5I3 950 aa17.31■□□□□ 0.36
LIMS4-202ENST00000480598 TLR3O15455 904 aaKnown RBP17.3■□□□□ 0.36
LIMS4-202ENST00000480598 PRC1O43663 620 aa17.3■□□□□ 0.36
LIMS4-202ENST00000480598 CD4P01730 458 aa17.3■□□□□ 0.36
LIMS4-202ENST00000480598 MYL3P08590 195 aa17.3■□□□□ 0.36
LIMS4-202ENST00000480598 TXNP10599 105 aaKnown RBP17.3■□□□□ 0.36
LIMS4-202ENST00000480598 EIF2AK2P19525 551 aaKnown RBP17.3■□□□□ 0.36
LIMS4-202ENST00000480598 NECTIN1Q15223 517 aa17.3■□□□□ 0.36
LIMS4-202ENST00000480598 ARHGEF16Q5VV41 709 aa17.3■□□□□ 0.36
LIMS4-202ENST00000480598 CASC1Q6TDU7 716 aa17.3■□□□□ 0.36
LIMS4-202ENST00000480598 SEPT14Q6ZU15 432 aa17.3■□□□□ 0.36
LIMS4-202ENST00000480598 PIBF1Q8WXW3 757 aa17.3■□□□□ 0.36
LIMS4-202ENST00000480598 PPP1R12CQ9BZL4 782 aa17.3■□□□□ 0.36
LIMS4-202ENST00000480598 NKRFO15226 690 aaKnown RBP eCLIP17.29■□□□□ 0.36
LIMS4-202ENST00000480598 CPT1AP50416 773 aa17.29■□□□□ 0.36
LIMS4-202ENST00000480598 HSD17B4P51659 736 aa17.29■□□□□ 0.36
LIMS4-202ENST00000480598 PURAQ00577 322 aaKnown RBP17.29■□□□□ 0.36
LIMS4-202ENST00000480598 TTLL4Q14679 1199 aa17.29■□□□□ 0.36
LIMS4-202ENST00000480598 ZNF654Q8IZM8 581 aa17.29■□□□□ 0.36
LIMS4-202ENST00000480598 PXMP2Q9NR77 195 aa17.29■□□□□ 0.36
LIMS4-202ENST00000480598 POLR3EQ9NVU0 708 aa17.29■□□□□ 0.36
LIMS4-202ENST00000480598 KIAA1217Q5T5P2 1943 aa17.28■□□□□ 0.36
LIMS4-202ENST00000480598 SH2B2O14492 632 aaPredicted RBP17.28■□□□□ 0.36
LIMS4-202ENST00000480598 B4GALT4O60513 344 aa17.28■□□□□ 0.36
LIMS4-202ENST00000480598 HOXA13P31271 388 aaPredicted RBP17.28■□□□□ 0.36
LIMS4-202ENST00000480598 MCM5P33992 734 aa17.28■□□□□ 0.36
LIMS4-202ENST00000480598 GHRHRQ02643 423 aa17.28■□□□□ 0.36
LIMS4-202ENST00000480598 STXBP2Q15833 593 aa17.28■□□□□ 0.36
LIMS4-202ENST00000480598 MFSD5Q6N075 450 aa17.28■□□□□ 0.36
LIMS4-202ENST00000480598 CCDC62Q6P9F0 684 aa17.28■□□□□ 0.36
LIMS4-202ENST00000480598 PPP1R13LQ8WUF5 828 aa17.28■□□□□ 0.36
LIMS4-202ENST00000480598 RNPC3Q96LT9 517 aaKnown RBP17.28■□□□□ 0.36
LIMS4-202ENST00000480598 IWS1Q96ST2 819 aa17.28■□□□□ 0.36
LIMS4-202ENST00000480598 LRRC2Q9BYS8 371 aa17.28■□□□□ 0.36
LIMS4-202ENST00000480598 TRPV6Q9H1D0 765 aa17.28■□□□□ 0.36
LIMS4-202ENST00000480598 UMODL1Q5DID0 1318 aa17.27■□□□□ 0.36
LIMS4-202ENST00000480598 COL6A3P12111 3177 aa17.27■□□□□ 0.36
LIMS4-202ENST00000480598 PNMA6FA0A0J9YX94 578 aa17.27■□□□□ 0.36
LIMS4-202ENST00000480598 DDAH1O94760 285 aa17.27■□□□□ 0.36
LIMS4-202ENST00000480598 NR3C2P08235 984 aa17.27■□□□□ 0.36
LIMS4-202ENST00000480598 CYP2C18P33260 490 aa17.27■□□□□ 0.36
LIMS4-202ENST00000480598 LY6KQ17RY6 165 aa17.27■□□□□ 0.36
LIMS4-202ENST00000480598 NFXL1Q6ZNB6 911 aa17.27■□□□□ 0.36
LIMS4-202ENST00000480598 RAB11FIP4Q86YS3 637 aa17.27■□□□□ 0.36
LIMS4-202ENST00000480598 MTG1Q9BT17 334 aaPredicted RBP17.27■□□□□ 0.36
LIMS4-202ENST00000480598 MTMR10Q9NXD2 777 aa17.27■□□□□ 0.36
LIMS4-202ENST00000480598 SCN10AQ9Y5Y9 1956 aa17.26■□□□□ 0.35
LIMS4-202ENST00000480598 A6NJR5 290 aa17.26■□□□□ 0.35
LIMS4-202ENST00000480598 CSF2RAP15509 400 aa17.26■□□□□ 0.35
LIMS4-202ENST00000480598 RXRAP19793 462 aa17.26■□□□□ 0.35
LIMS4-202ENST00000480598 BRDTQ58F21 947 aaPredicted RBP17.26■□□□□ 0.35
LIMS4-202ENST00000480598 IL31RAQ8NI17 732 aa17.26■□□□□ 0.35
LIMS4-202ENST00000480598 CTCFLQ8NI51 663 aaPredicted RBP17.26■□□□□ 0.35
LIMS4-202ENST00000480598 AFG1LQ8WV93 481 aa17.26■□□□□ 0.35
LIMS4-202ENST00000480598 CCDC136Q96JN2 1154 aa17.26■□□□□ 0.35
LIMS4-202ENST00000480598 TMEM87BQ96K49 555 aa17.26■□□□□ 0.35
LIMS4-202ENST00000480598 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.26■□□□□ 0.35
LIMS4-202ENST00000480598 PDCD2LQ9BRP1 358 aa17.26■□□□□ 0.35
LIMS4-202ENST00000480598 MTA3Q9BTC8 594 aa17.26■□□□□ 0.35
LIMS4-202ENST00000480598 ALDH8A1Q9H2A2 487 aaPredicted RBP17.26■□□□□ 0.35
LIMS4-202ENST00000480598 HIPK3Q9H422 1215 aa17.26■□□□□ 0.35
LIMS4-202ENST00000480598 CCDC69A6NI79 296 aa17.25■□□□□ 0.35
LIMS4-202ENST00000480598 GCOM1H8Y6P7 765 aaPredicted RBP17.25■□□□□ 0.35
LIMS4-202ENST00000480598 CDC45O75419 566 aa17.25■□□□□ 0.35
LIMS4-202ENST00000480598 EIF3JO75822 258 aaKnown RBP17.25■□□□□ 0.35
LIMS4-202ENST00000480598 PLEKHA8P1O95397 391 aa17.25■□□□□ 0.35
LIMS4-202ENST00000480598 GH1P01241 217 aa17.25■□□□□ 0.35
LIMS4-202ENST00000480598 POLR2MP0CAP2 368 aa17.25■□□□□ 0.35
LIMS4-202ENST00000480598 ACRP10323 421 aa17.25■□□□□ 0.35
LIMS4-202ENST00000480598 MYCLP12524 364 aaPredicted RBP17.25■□□□□ 0.35
LIMS4-202ENST00000480598 ARHGAP1Q07960 439 aa17.25■□□□□ 0.35
LIMS4-202ENST00000480598 PPIGQ13427 754 aaKnown RBP eCLIP17.25■□□□□ 0.35
LIMS4-202ENST00000480598 C16orf59Q7L2K0 433 aa17.25■□□□□ 0.35
LIMS4-202ENST00000480598 FCHSD1Q86WN1 690 aa17.25■□□□□ 0.35
LIMS4-202ENST00000480598 TMEM199Q8N511 208 aa17.25■□□□□ 0.35
LIMS4-202ENST00000480598 FAM161BQ96MY7 647 aa17.25■□□□□ 0.35
LIMS4-202ENST00000480598 MAP3K14Q99558 947 aa17.25■□□□□ 0.35
LIMS4-202ENST00000480598 SEZ6LQ9BYH1 1024 aa17.25■□□□□ 0.35
LIMS4-202ENST00000480598 TRMT13Q9NUP7 481 aaKnown RBP17.25■□□□□ 0.35
LIMS4-202ENST00000480598 MMP3P08254 477 aa17.24■□□□□ 0.35
LIMS4-202ENST00000480598 KIF5BP33176 963 aa17.24■□□□□ 0.35
LIMS4-202ENST00000480598 CCL23P55773 120 aa17.24■□□□□ 0.35
LIMS4-202ENST00000480598 TRAF1Q13077 416 aa17.24■□□□□ 0.35
LIMS4-202ENST00000480598 NBPF20Q3BBV1 942 aa17.24■□□□□ 0.35
LIMS4-202ENST00000480598 FAM47CQ5HY64 1035 aa17.24■□□□□ 0.35
LIMS4-202ENST00000480598 TMEM240Q5SV17 173 aa17.24■□□□□ 0.35
LIMS4-202ENST00000480598 CMTR1Q8N1G2 835 aaKnown RBP17.24■□□□□ 0.35
LIMS4-202ENST00000480598 SRBD1Q8N5C6 995 aaKnown RBP17.24■□□□□ 0.35
LIMS4-202ENST00000480598 ZFP91Q96JP5 570 aaPredicted RBP17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms